Works matching IS 1553734X AND DT 2013 AND VI 9 AND IP 6

Results: 33

International Society for Computational Biology Honors David Eisenberg with 2013 Accomplishment by a Senior Scientist Award.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003116

By:

Fogg, Christiana N.;
Kovats, Diane E.

Publication type:

Article

Understanding the Molecular Determinants Driving the Immunological Specificity of the Protective Pilus 2a Backbone Protein of Group B Streptococcus.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003115

By:

Nuccitelli, Annalisa;
Rinaudo, C. Daniela;
Brogioni, Barbara;
Cozzi, Roberta;
Ferrer-Navarro, Mario;
Yero, Daniel;
Telford, John L.;
Grandi, Guido;
Daura, Xavier;
Zacharias, Martin;
Maione, Domenico

Publication type:

Article

Molecular Mechanisms in the Activation of Abscisic Acid Receptor PYR1.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003114

By:

Dorosh, Lyudmyla;
Kharenko, Olesya A.;
Rajagopalan, Nandhakishore;
Loewen, Michele C.;
Stepanova, Maria

Publication type:

Article

Impact of Ribosomal Modification on the Binding of the Antibiotic Telithromycin Using a Combined Grand Canonical Monte Carlo/Molecular Dynamics Simulation Approach.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003113

By:

Small, Meagan C.;
Lopes, Pedro;
Andrade, Rodrigo B.;
MacKerell Jr, Alexander D.

Publication type:

Article

Dual Delayed Feedback Provides Sensitivity and Robustness to the NF-κB Signaling Module.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003112

By:

Longo, Diane M.;
Selimkhanov, Jangir;
Kearns, Jeffrey D.;
Hasty, Jeff;
Hoffmann, Alexander;
Tsimring, Lev S.

Publication type:

Article

A Design Principle of Group-level Decision Making in Cell Populations.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003110

By:

Fujimoto, Koichi;
Sawai, Satoshi

Publication type:

Article

Bacteria-Human Somatic Cell Lateral Gene Transfer Is Enriched in Cancer Samples.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003107

By:

Riley, David R.;
Sieber, Karsten B.;
Robinson, Kelly M.;
White, James Robert;
Ganesan, Ashwinkumar;
Nourbakhsh, Syrus;
Dunning Hotopp, Julie C.

Publication type:

Article

Cooperative Binding.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003106

By:

Stefan, Melanie I.;
Le Novère, Nicolas

Publication type:

Article

How the Dynamics and Structure of Sexual Contact Networks Shape Pathogen Phylogenies.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003105

By:

Robinson, Katy;
Fyson, Nick;
Cohen, Ted;
Fraser, Christophe;
Colijn, Caroline

Publication type:

Article

A Forced Damped Oscillation Framework for Undulatory Swimming Provides New Insights into How Propulsion Arises in Active and Passive Swimming.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003097

By:

Bhalla, Amneet Pal Singh;
Griffith, Boyce E.;
Patankar, Neelesh A.

Publication type:

Article

Gag-Pol Processing during HIV-1 Virion Maturation: A Systems Biology Approach.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003103

By:

Könnyű, Balázs;
Sadiq, S. Kashif;
Turányi, Tamás;
Hírmondó, Rita;
Müller, Barbara;
Kräusslich, Hans-Georg;
Coveney, Peter V.;
Müller, Viktor

Publication type:

Article

PUMA: A Unified Framework for Penalized Multiple Regression Analysis of GWAS Data.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003101

By:

Hoffman, Gabriel E.;
Logsdon, Benjamin A.;
Mezey, Jason G.

Publication type:

Article

Integrative Analysis of Deep Sequencing Data Identifies Estrogen Receptor Early Response Genes and Links ATAD3B to Poor Survival in Breast Cancer.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003100

By:

Ovaska, Kristian;
Matarese, Filomena;
Grote, Korbinian;
Charapitsa, Iryna;
Cervera, Alejandra;
Liu, Chengyu;
Reid, George;
Seifert, Martin;
Stunnenberg, Hendrik G.;
Hautaniemi, Sampsa

Publication type:

Article

Dynamic Excitatory and Inhibitory Gain Modulation Can Produce Flexible, Robust and Optimal Decision-making.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003099

By:

Niyogi, Ritwik K.;
Wong-Lin, KongFatt

Publication type:

Article

Neuronal Functional Connection Graphs among Multiple Areas of the Rat Somatosensory System during Spontaneous and Evoked Activities.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003104

By:

Zippo, Antonio G.;
Storchi, Riccardo;
Nencini, Sara;
Caramenti, Gian Carlo;
Valente, Maurizio;
Biella, Gabriele Eliseo M.

Publication type:

Article

Modelling Co-Infection with Malaria and Lymphatic Filariasis.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003096

By:

Slater, Hannah C.;
Gambhir, Manoj;
Parham, Paul E.;
Michael, Edwin

Publication type:

Article

Fibrin Networks Regulate Protein Transport during Thrombus Development.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003095

By:

Kim, Oleg V.;
Xu, Zhiliang;
Rosen, Elliot D.;
Alber, Mark S.

Publication type:

Article

Emotional Valence and the Free-Energy Principle.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003094

By:

Joffily, Mateus;
Coricelli, Giorgio

Publication type:

Article

Leveraging Prior Information to Detect Causal Variants via Multi-Variant Regression.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003093

By:

Long, Nanye;
Dickson, Samuel P.;
Maia, Jessica M.;
Kim, Hee Shin;
Zhu, Qianqian;
Allen, Andrew S.

Publication type:

Article

Mate Choice and the Origin of Menopause.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003092

By:

Morton, Richard A.;
Stone, Jonathan R.;
Singh, Rama S.

Publication type:

Article

The Ability of Flux Balance Analysis to Predict Evolution of Central Metabolism Scales with the Initial Distance to the Optimum.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003091

By:

Harcombe, William R.;
Delaney, Nigel F.;
Leiby, Nicholas;
Klitgord, Niels;
Marx, Christopher J.

Publication type:

Article

Exploring Volatile General Anesthetic Binding to a Closed Membrane-Bound Bacterial Voltage-Gated Sodium Channel via Computation.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003090

By:

Raju, S. G.;
Barber, Annika F.;
LeBard, David N.;
Klein, Michael L.;
Carnevale, Vincenzo

Publication type:

Article

Bioinformatics Goes to School—New Avenues for Teaching Contemporary Biology.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003089

By:

Wood, Louisa;
Gebhardt, Philipp

Publication type:

Article

Scrutinizing MHC-I Binding Peptides and Their Limits of Variation.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003088

By:

Koch, Christian P.;
Perna, Anna M.;
Pillong, Max;
Todoroff, Nickolay K.;
Wrede, Paul;
Folkers, Gerd;
Hiss, Jan A.;
Schneider, Gisbert

Publication type:

Article

Combinatorial Clustering of Residue Position Subsets Predicts Inhibitor Affinity across the Human Kinome.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003087

By:

Bryant, Drew H.;
Moll, Mark;
Finn, Paul W.;
Kavraki, Lydia E.

Publication type:

Article

Unsupervised Clustering of Subcellular Protein Expression Patterns in High-Throughput Microscopy Images Reveals Protein Complexes and Functional Relationships between Proteins.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003085

By:

Handfield, Louis-François;
Chong, Yolanda T.;
Simmons, Jibril;
Andrews, Brenda J.;
Moses, Alan M.

Publication type:

Article

Theta Coordinated Error-Driven Learning in the Hippocampus.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003067

By:

Ketz, Nicholas;
Morkonda, Srinimisha G.;
O'Reilly, Randall C.

Publication type:

Article

Patterns of Proliferative Activity in the Colonic Crypt Determine Crypt Stability and Rates of Somatic Evolution.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003082

By:

Zhao, Rui;
Michor, Franziska

Publication type:

Article

Flux Balance Analysis of Cyanobacterial Metabolism: The Metabolic Network of Synechocystis sp. PCC 6803.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003081

By:

Knoop, Henning;
Gründel, Marianne;
Zilliges, Yvonne;
Lehmann, Robert;
Hoffmann, Sabrina;
Lockau, Wolfgang;
Steuer, Ralf

Publication type:

Article

Towards Systematic Discovery of Signaling Networks in Budding Yeast Filamentous Growth Stress Response Using Interventional Phosphorylation Data.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003077

By:

Zhang, Yan;
Kweon, Hye Kyong;
Shively, Christian;
Kumar, Anuj;
Andrews, Philip C.

Publication type:

Article

Constraint and Contingency in Multifunctional Gene Regulatory Circuits.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003071

By:

Payne, Joshua L.;
Wagner, Andreas

Publication type:

Article

Quantitative Analysis of Glycerol Accumulation, Glycolysis and Growth under Hyper Osmotic Stress.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003084

By:

Petelenz-Kurdziel, Elzbieta;
Kuehn, Clemens;
Nordlander, Bodil;
Klein, Dagmara;
Hong, Kuk-Ki;
Jacobson, Therese;
Dahl, Peter;
Schaber, Jörg;
Nielsen, Jens;
Hohmann, Stefan;
Klipp, Edda

Publication type:

Article

Are V1 Simple Cells Optimized for Visual Occlusions? A Comparative Study.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pcbi.1003062

By:

Bornschein, Jörg;
Henniges, Marc;
Lücke, Jörg

Publication type:

Article

Works matching IS 1553734X AND DT 2013 AND VI 9 AND IP 6

International Society for Computational Biology Honors David Eisenberg with 2013 Accomplishment by a Senior Scientist Award.

Understanding the Molecular Determinants Driving the Immunological Specificity of the Protective Pilus 2a Backbone Protein of Group B <i>Streptococcus</i>.

Molecular Mechanisms in the Activation of Abscisic Acid Receptor PYR1.

Impact of Ribosomal Modification on the Binding of the Antibiotic Telithromycin Using a Combined Grand Canonical Monte Carlo/Molecular Dynamics Simulation Approach.

Dual Delayed Feedback Provides Sensitivity and Robustness to the NF-<i>κ</i>B Signaling Module.

A Design Principle of Group-level Decision Making in Cell Populations.

Bacteria-Human Somatic Cell Lateral Gene Transfer Is Enriched in Cancer Samples.

Cooperative Binding.

How the Dynamics and Structure of Sexual Contact Networks Shape Pathogen Phylogenies.

A Forced Damped Oscillation Framework for Undulatory Swimming Provides New Insights into How Propulsion Arises in Active and Passive Swimming.

Gag-Pol Processing during HIV-1 Virion Maturation: A Systems Biology Approach.

PUMA: A Unified Framework for Penalized Multiple Regression Analysis of GWAS Data.

Integrative Analysis of Deep Sequencing Data Identifies Estrogen Receptor Early Response Genes and Links <i>ATAD3B</i> to Poor Survival in Breast Cancer.

Dynamic Excitatory and Inhibitory Gain Modulation Can Produce Flexible, Robust and Optimal Decision-making.

Neuronal Functional Connection Graphs among Multiple Areas of the Rat Somatosensory System during Spontaneous and Evoked Activities.

Modelling Co-Infection with Malaria and Lymphatic Filariasis.

Fibrin Networks Regulate Protein Transport during Thrombus Development.

Emotional Valence and the Free-Energy Principle.

Leveraging Prior Information to Detect Causal Variants via Multi-Variant Regression.

Mate Choice and the Origin of Menopause.

The Ability of Flux Balance Analysis to Predict Evolution of Central Metabolism Scales with the Initial Distance to the Optimum.

Exploring Volatile General Anesthetic Binding to a Closed Membrane-Bound Bacterial Voltage-Gated Sodium Channel via Computation.

Bioinformatics Goes to School—New Avenues for Teaching Contemporary Biology.

Scrutinizing MHC-I Binding Peptides and Their Limits of Variation.

Combinatorial Clustering of Residue Position Subsets Predicts Inhibitor Affinity across the Human Kinome.

Unsupervised Clustering of Subcellular Protein Expression Patterns in High-Throughput Microscopy Images Reveals Protein Complexes and Functional Relationships between Proteins.

Theta Coordinated Error-Driven Learning in the Hippocampus.

Patterns of Proliferative Activity in the Colonic Crypt Determine Crypt Stability and Rates of Somatic Evolution.

Flux Balance Analysis of Cyanobacterial Metabolism: The Metabolic Network of Synechocystis sp. PCC 6803.

Towards Systematic Discovery of Signaling Networks in Budding Yeast Filamentous Growth Stress Response Using Interventional Phosphorylation Data.

Constraint and Contingency in Multifunctional Gene Regulatory Circuits.

Quantitative Analysis of Glycerol Accumulation, Glycolysis and Growth under Hyper Osmotic Stress.

Are V1 Simple Cells Optimized for Visual Occlusions? A Comparative Study.