Works matching IS 1553734X AND DT 2013 AND VI 9 AND IP 11

Results: 55

Conserved Substitution Patterns around Nucleosome Footprints in Eukaryotes and Archaea Derive from Frequent Nucleosome Repositioning through Evolution.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003373

By:

Warnecke, Tobias;
Becker, Erin A.;
Facciotti, Marc T.;
Nislow, Corey;
Lehner, Ben

Publication type:

Article

Multiscale Modeling of Influenza A Virus Infection Supports the Development of Direct-Acting Antivirals.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003372

By:

Heldt, Frank S.;
Frensing, Timo;
Pflugmacher, Antje;
Gröpler, Robin;
Peschel, Britta;
Reichl, Udo

Publication type:

Article

Electrostatically Accelerated Encounter and Folding for Facile Recognition of Intrinsically Disordered Proteins.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003363

By:

Ganguly, Debabani;
Zhang, Weihong;
Chen, Jianhan

Publication type:

Article

Understanding the Connection between Epigenetic DNA Methylation and Nucleosome Positioning from Computer Simulations.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003354

By:

Portella, Guillem;
Battistini, Federica;
Orozco, Modesto

Publication type:

Article

The Young PI Buzz: Learning from the Organizers of the Junior Principal Investigator Meeting at ISMB-ECCB 2013.

Published in:

2013

By:

de Ridder, Jeroen;
Bromberg, Yana;
Michaut, Magali;
Satagopam, Venkata P.;
Corpas, Manuel;
Macintyre, Geoff;
Alexandrov, Theodore

Publication type:

Opinion

Harnessing Diversity towards the Reconstructing of Large Scale Gene Regulatory Networks.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003361

By:

Hase, Takeshi;
Ghosh, Samik;
Yamanaka, Ryota;
Kitano, Hiroaki

Publication type:

Article

Practical Guidelines for the Comprehensive Analysis of ChIP-seq Data.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003326

By:

Bailey, Timothy;
Krajewski, Pawel;
Ladunga, Istvan;
Lefebvre, Celine;
Li, Qunhua;
Liu, Tao;
Madrigal, Pedro;
Taslim, Cenny;
Zhang, Jie

Publication type:

Article

Exploring Fold Space Preferences of New-born and Ancient Protein Superfamilies.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003325

By:

Edwards, Hannah;
Abeln, Sanne;
Deane, Charlotte M.

Publication type:

Article

Quantifying Chaperone-Mediated Transitions in the Proteostasis Network of E. coli.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003324

By:

Dickson, Alex;
Brooks III, Charles L.

Publication type:

Article

Beyond GLMs: A Generative Mixture Modeling Approach to Neural System Identification.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003356

By:

Theis, Lucas;
Chagas, Andrè Maia;
Arnstein, Daniel;
Schwarz, Cornelius;
Bethge, Matthias

Publication type:

Article

Breaking the Ice and Forging Links: The Importance of Socializing in Research.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003355

By:

Stobbe, Miranda;
Mishra, Tarun;
Macintyre, Geoff

Publication type:

Article

Linking Transcriptional Changes over Time in Stimulated Dendritic Cells to Identify Gene Networks Activated during the Innate Immune Response.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003323

By:

Patil, Ashwini;
Kumagai, Yutaro;
Liang, Kuo-ching;
Suzuki, Yutaka;
Nakai, Kenta

Publication type:

Article

Substrate-Driven Mapping of the Degradome by Comparison of Sequence Logos.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003353

By:

Fuchs, Julian E.;
von Grafenstein, Susanne;
Huber, Roland G.;
Kramer, Christian;
Liedl, Klaus R.

Publication type:

Article

MicroRNA-Gene Association As a Prognostic Biomarker in Cancer Exposes Disease Mechanisms.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003351

By:

Ben-Hamo, Rotem;
Efroni, Sol

Publication type:

Article

Learning How to Run a Lab: Interviews with Principal Investigators.

Published in:

2013

By:

Alexandrov, Theodore;
Bourne, Philip E.

Publication type:

Editorial

Systematic Analysis of Compositional Order of Proteins Reveals New Characteristics of Biological Functions and a Universal Correlate of Macroevolution.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003346

By:

Persi, Erez;
Horn, David

Publication type:

Article

Average Is Optimal: An Inverted-U Relationship between Trial-to-Trial Brain Activity and Behavioral Performance.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003348

By:

He, Biyu J.;
Zempel, John M.

Publication type:

Article

Ten Quick Tips for Using the Gene Ontology.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003343

By:

Blake, Judith A.

Publication type:

Article

Assessing Computational Methods for Transcription Factor Target Gene Identification Based on ChIP-seq Data.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003342

By:

Sikora-Wohlfeld, Weronika;
Ackermann, Marit;
Christodoulou, Eleni G.;
Singaravelu, Kalaimathy;
Beyer, Andreas

Publication type:

Article

Structure-Based Function Prediction of Uncharacterized Protein Using Binding Sites Comparison.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003341

By:

Konc, Janez;
Hodošček, Milan;
Ogrizek, Mitja;
Trykowska Konc, Joanna;
Janežič, Dušanka

Publication type:

Article

Genetic Architecture Promotes the Evolution and Maintenance of Cooperation.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003339

By:

Frénoy, Antoine;
Taddei, François;
Misevic, Dusan

Publication type:

Article

Ten Simple Rules for Starting a Regional Student Group.

Published in:

2013

By:

Shanmugam, Avinash Kumar;
Macintyre, Geoff;
Michaut, Magali;
Abeel, Thomas

Publication type:

Editorial

Conformational Coupling between Receptor and Kinase Binding Sites through a Conserved Salt Bridge in a Signaling Complex Scaffold Protein.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003337

By:

Ortega, Davi R.;
Mo, Guoya;
Lee, Kwangwoon;
Zhou, Hongjun;
Baudry, Jerome;
Dahlquist, Frederick W.;
Zhulin, Igor B.

Publication type:

Article

Auditory Frequency and Intensity Discrimination Explained Using a Cortical Population Rate Code.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003336

By:

Micheyl, Christophe;
Schrater, Paul R.;
Oxenham, Andrew J.

Publication type:

Article

Dread and the Disvalue of Future Pain.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003335

By:

Story, Giles W.;
Vlaev, Ivaylo;
Seymour, Ben;
Winston, Joel S.;
Darzi, Ara;
Dolan, Raymond J.

Publication type:

Article

A Petri Net Model of Granulomatous Inflammation: Implications for IL-10 Mediated Control of Leishmania donovani Infection.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003334

By:

Albergante, Luca;
Timmis, Jon;
Beattie, Lynette;
Kaye, Paul M.

Publication type:

Article

Leading a Statistical Bioinformatics Lab: It's All About Finding Balance.

Published in:

2013

By:

Vitek, Olga

Publication type:

Opinion

Mechanical and Assembly Units of Viral Capsids Identified via Quasi-Rigid Domain Decomposition.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003331

By:

Polles, Guido;
Indelicato, Giuliana;
Potestio, Raffaello;
Cermelli, Paolo;
Twarock, Reidun;
Micheletti, Cristian

Publication type:

Article

About Dice, Bouldering, and Team Empowerment: Running the CompOmics Group at VIB and Ghent University, Belgium.

Published in:

2013

By:

Martens, Lennart

Publication type:

Opinion

Synaptic Plasticity in Neural Networks Needs Homeostasis with a Fast Rate Detector.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003330

By:

Zenke, Friedemann;
Hennequin, Guillaume;
Gerstner, Wulfram

Publication type:

Article

Mapping the Structural and Dynamical Features of Kinesin Motor Domains.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003329

By:

Scarabelli, Guido;
Grant, Barry J.

Publication type:

Article

A Data-Driven Mathematical Model of CA-MRSA Transmission among Age Groups: Evaluating the Effect of Control Interventions.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003328

By:

Wang, Xiaoxia;
Panchanathan, Sarada;
Chowell, Gerardo

Publication type:

Article

Phosphorelays Provide Tunable Signal Processing Capabilities for the Cell.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003322

By:

Kothamachu, Varun B.;
Feliu, Elisenda;
Wiuf, Carsten;
Cardelli, Luca;
Soyer, Orkun S.

Publication type:

Article

Exploring the Composition of Protein-Ligand Binding Sites on a Large Scale.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003321

By:

Khazanov, Nickolay A.;
Carlson, Heather A.

Publication type:

Article

Optimality Conditions for Cell-Fate Heterogeneity That Maximize the Effects of Growth Factors in PC12 Cells.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003320

By:

Mouri, Kazunari;
Sako, Yasushi

Publication type:

Article

Cell-Based Multi-Parametric Model of Cleft Progression during Submandibular Salivary Gland Branching Morphogenesis.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003319

By:

Ray, Shayoni;
Yuan, Daniel;
Dhulekar, Nimit;
Oztan, Basak;
Yener, Bülent;
Larsen, Melinda

Publication type:

Article

Prediction of Drug-Target Interactions for Drug Repositioning Only Based on Genomic Expression Similarity.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003315

By:

Wang, Kejian;
Sun, Jiazhi;
Zhou, Shufeng;
Wan, Chunling;
Qin, Shengying;
Li, Can;
He, Lin;
Yang, Lun

Publication type:

Article

Modeling Integrated Cellular Machinery Using Hybrid Petri-Boolean Networks.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003306

By:

Berestovsky, Natalie;
Zhou, Wanding;
Nagrath, Deepak;
Nakhleh, Luay

Publication type:

Article

Computational Protein Design Quantifies Structural Constraints on Amino Acid Covariation.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003313

By:

Ollikainen, Noah;
Kortemme, Tanja

Publication type:

Article

Improving the Modeling of Disease Data from the Government Surveillance System: A Case Study on Malaria in the Brazilian Amazon.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003312

By:

Valle, Denis;
Clark, James

Publication type:

Article

Stochastic Computations in Cortical Microcircuit Models.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003311

By:

Habenschuss, Stefan;
Jonke, Zeno;
Maass, Wolfgang

Publication type:

Article

Receptor Concentration and Diffusivity Control Multivalent Binding of Sv40 to Membrane Bilayers.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003310

By:

Szklarczyk, Oliwia M.;
González-Segredo, Nélido;
Kukura, Philipp;
Oppenheim, Ariella;
Choquet, Daniel;
Sandoghdar, Vahid;
Helenius, Ari;
Sbalzarini, Ivo F.;
Ewers, Helge

Publication type:

Article

Systematically Differentiating Functions for Alternatively Spliced Isoforms through Integrating RNA-seq Data.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003314

By:

Eksi, Ridvan;
Li, Hong-Dong;
Menon, Rajasree;
Wen, Yuchen;
Omenn, Gilbert S.;
Kretzler, Matthias;
Guan, Yuanfang

Publication type:

Article

Distribution of the Fittest Individuals and the Rate of Muller's Ratchet in a Model with Overlapping Generations.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003303

By:

Metzger, Jakob J.;
Eule, Stephan

Publication type:

Article

A Computational Model of Liver Iron Metabolism.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003299

By:

Mitchell, Simon;
Mendes, Pedro

Publication type:

Article

Comparing Algorithms That Reconstruct Cell Lineage Trees Utilizing Information on Microsatellite Mutations.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003297

By:

Chapal-Ilani, Noa;
Maruvka, Yosef E.;
Spiro, Adam;
Reizel, Yitzhak;
Adar, Rivka;
Shlush, Liran I.;
Shapiro, Ehud

Publication type:

Article

In Silico Analysis of Cell Cycle Synchronisation Effects in Radiotherapy of Tumour Spheroids.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003295

By:

Kempf, Harald;
Hatzikirou, Haralampos;
Bleicher, Marcus;
Meyer-Hermann, Michael

Publication type:

Article

A Neurocomputational Model of the Mismatch Negativity.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003288

By:

Lieder, Falk;
Stephan, Klaas E.;
Daunizeau, Jean;
Garrido, Marta I.;
Friston, Karl J.

Publication type:

Article

Evidence for Finely-Regulated Asynchronous Growth of Toxoplasma gondii Cysts Based on Data-Driven Model Selection.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003283

By:

Sullivan, Adam M.;
Zhao, Xiaopeng;
Suzuki, Yasuhiro;
Ochiai, Eri;
Crutcher, Stephen;
Gilchrist, Michael A.

Publication type:

Article

Communication and Common Interest.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 11, p. 1, doi. 10.1371/journal.pcbi.1003282

By:

Godfrey-Smith, Peter;
Martínez, Manolo

Publication type:

Article