Works matching IS 1553734X AND DT 2012 AND VI 8 AND IP 6

Results: 46

Learning with Slight Forgetting Optimizes Sensorimotor Transformation in Redundant Motor Systems.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002590

By:

Hirashima, Masaya;
Nozaki, Daichi

Publication type:

Article

Modeling Within-Host Dynamics of Influenza Virus Infection Including Immune Responses.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002588

By:

Pawelek, Kasia A.;
Huynh, Giao T.;
Quinlivan, Michelle;
Cullinane, Ann;
Rong, Libin;
Perelson, Alan S.

Publication type:

Article

From Dynamic Expression Patterns to Boundary Formation in the Presomitic Mesoderm.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002586

By:

Tiedemann, Hendrik B.;
Schneltzer, Elida;
Zeiser, Stefan;
Hoesel, Bastian;
Beckers, Johannes;
Przemeck, Gerhard K. H.;
De Angelis, Martin Hrabě

Publication type:

Article

Quantifying the Contribution of the Liver to Glucose Homeostasis: A Detailed Kinetic Model of Human Hepatic Glucose Metabolism.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002577

By:

König, Matthias;
Bulik, Sascha;
Holzhütter, Hermann-Georg

Publication type:

Article

Deceleration of Fusion-Fission Cycles Improves Mitochondrial Quality Control during Aging.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002576

By:

Figge, Marc Thilo;
Reichert, Andreas S.;
Meyer-Hermann, Michael;
Osiewacz, Heinz D.

Publication type:

Article

A Model-Based Bayesian Estimation of the Rate of Evolution of VNTR Loci in Mycobacterium tuberculosis.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002573

By:

Aandahl, R. Zachariah;
Reyes, Josephine F.;
Sisson, Scott A.;
Tanaka, Mark M.

Publication type:

Article

Bringing Molecules Back into Molecular Evolution.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002572

By:

Wilke, Claus O.

Publication type:

Article

Virtual Patients and Sensitivity Analysis of the Guyton Model of Blood Pressure Regulation: Towards Individualized Models of Whole-Body Physiology.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002571

By:

Moss, Robert;
Grosse, Thibault;
Marchant, Ivanny;
Lassau, Nathalie;
Gueyffier, François;
Thomas, Randall

Publication type:

Article

A Report of the Curriculum Task Force of the ISCB Education Committee.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002570

By:

Welch, Lonnie R.;
Schwartz, Russell;
Lewitter, Fran

Publication type:

Article

Fast Spatiotemporal Smoothing of Calcium Measurements in Dendritic Trees.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002569

By:

Pnevmatikakis, Eftychios A.;
Kelleher, Keith;
Chen, Rebecca;
Saggau, Petter;
Josić, Krešimir;
Paninski, Liam

Publication type:

Article

MC EMiNEM Maps the Interaction Landscape of the Mediator.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002568

By:

Niederberger, Theresa;
Etzold, Stefanie;
Lidschreiber, Michael;
Maier, Kerstin C.;
Martin, Dietmar E.;
Fröhlich, Holger;
Cramer, Patrick;
Tresch, Achim

Publication type:

Article

Protein Historian: Tools for the Comparative Analysis of Eukaryote Protein Origin.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002567

By:

Capra, John A.;
Williams, Alexander G.;
Pollard, Katherine S.

Publication type:

Article

Posterior Association Networks and Functional Modules Inferred from Rich Phenotypes of Gene Perturbations.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002566

By:

Xin Wang;
Castro, Mauro A.;
Mulder, Klaas W.;
Markowetz, Florian

Publication type:

Article

Charge Profile Analysis Reveals That Activation of Proapoptotic Regulators Bax and Bak Relies on Charge Transfer Mediated Allosteric Regulation.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002565

By:

Ionescu, Crina-Maria;
Vařeková, Radka Svobodová;
Prehn, Jochen H. M.;
Huber, Heinrich J.;
Koča, Jaroslav

Publication type:

Article

A Scalable Algorithm to Explore the Gibbs Energy Landscape of Genome-Scale Metabolic Networks.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002562

By:

De Martino, Daniele;
Figliuzzi, Matteo;
De Martino, Andrea;
Marinari, Enzo

Publication type:

Article

Computing with Neural Synchrony.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002561

By:

Brette, Romain

Publication type:

Article

Complementarity of Spike- and Rate-Based Dynamics of Neural Systems.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002560

By:

Wilson, M. T.;
Robinson, P. A.;
O'Neill, B.;
Steyn-Ross, D. A.

Publication type:

Article

Multiple Genetic Interaction Experiments Provide Complementary Information Useful for Gene Function Prediction.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002559

By:

Michaut, Magali;
Bader, Gary D.

Publication type:

Article

Probing the Mutational Interplay between Primary and Promiscuous Protein Functions: A Computational- Experimental Approach.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002558

By:

Garcia-Seisdedos, Hector;
Ibarra-Molero, Beatriz;
Sanchez-Ruiz, Jose M.

Publication type:

Article

Short Term Synaptic Depression Imposes a Frequency Dependent Filter on Synaptic Information Transfer.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002557

By:

Rosenbaum, Robert;
Rubin, Jonathan;
Doiron, Brent

Publication type:

Article

The Impact of Phenotypic Switching on Glioblastoma Growth and Invasion.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002556

By:

Gerlee, Philip;
Nelander, Sven

Publication type:

Article

Minimum Free Energy Path of Ligand-Induced Transition in Adenylate Kinase.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002555

By:

Matsunaga, Yasuhiro;
Fujisaki, Hiroshi;
Terada, Tohru;
Furuta, Tadaomi;
Moritsugu, Kei;
Kidera, Akinori

Publication type:

Article

Modeling Boundary Vector Cell Firing Given Optic Flow as a Cue.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002553

By:

Raudies, Florian;
Hasselmo, Michael E.

Publication type:

Article

Simple Epidemiological Dynamics Explain Phylogenetic Clustering of HIV from Patients with Recent Infection.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002552

By:

Volz, Erik M.;
Koopman, James S.;
Ward, Melissa J.;
Brown, Andrew Leigh;
Frost, Simon D. W.

Publication type:

Article

Protein Scaffolds Can Enhance the Bistability of Multisite Phosphorylation Systems.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002551

By:

Carlo Chan;
Xinfeng Liu;
Liming Wang;
Lee Bardwell;
Qing Nie;
Enciso, Germán

Publication type:

Article

Location-Dependent Effects of Inhibition on Local Spiking in Pyramidal Neuron Dendrites.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002550

By:

Jadi, Monika;
Polsky, Alon;
Schiller, Jackie;
Mel, Bartlett W.

Publication type:

Article

Potassium Starvation in Yeast: Mechanisms of Homeostasis Revealed by Mathematical Modeling.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002548

By:

Kahm, Matthias;
Navarrete, Clara;
Llopis-Torregrosa, Vicent;
Herrera, Rito;
Barreto, Lina;
Yenush, Lynne;
Ariño, Joaquin;
Ramos, Jose;
Kschischo, Maik

Publication type:

Article

Complex Spatial Dynamics of Oncolytic Viruses In Vitro: Mathematical and Experimental Approaches.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002547

By:

Wodarz, Dominik;
Hofacre, Andrew;
Lau, John W.;
Zhiying Sun;
Hung Fan;
Komarova, Natalia L.

Publication type:

Article

Prosthetic Avian Vocal Organ Controlled by a Freely Behaving Bird Based on a Low Dimensional Model of the Biomechanical Periphery.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002546

By:

Arneodo, Ezequiel M.;
Perl, Yonatan Sanz;
Goller, Franz;
Mindlin, Gabriel B.

Publication type:

Article

Spine Calcium Transients Induced by Synaptically- Evoked Action Potentials Can Predict Synapse Location and Establish Synaptic Democracy.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002545

By:

Sterratt, David C.;
Groen, Martine R.;
Meredith, Rhiannon M.;
Van Ooyen, Arjen

Publication type:

Article

Sarcomeric Pattern Formation by Actin Cluster Coalescence.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002544

By:

Friedrich, Benjamin M.;
Fischer-Friedrich, Elisabeth;
Gov, Nir S.;
Safran, Samuel A.

Publication type:

Article

What Can Systems Theory of Networks Offer to Biology?

Published in:

2012

By:

Rajapakse, Indika;
Groudine, Mark;
Mesbahi, Mehran

Publication type:

Opinion

A Platform-Independent Method for Detecting Errors in Metagenomic Sequencing Data: DRISEE.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002541

By:

Keegan, Kevin P.;
Trimble, William L.;
Wilkening, Jared;
Wilke, Andreas;
Harrison, Travis;
D'Souza, Mark;
Meyer, Folker

Publication type:

Article

A Maximum Entropy Test for Evaluating Higher-Order Correlations in Spike Counts.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002539

By:

Onken, Arno;
Dragoi, Valentin;
Obermayer, Klaus

Publication type:

Article

Integrative Approach to Pain Genetics Identifies Pain Sensitivity Loci across Diseases.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002538

By:

Ruau, David;
Dudley, Joel T.;
Chen, Rong;
Phillips, Nicholas G.;
Swan, Gary E.;
Lazzeroni, Laura C.;
Clark, J. David;
Butte, Atul J.;
Angst, Martin S.

Publication type:

Article

Structural and Dynamic Requirements for Optimal Activity of the Essential Bacterial Enzyme Dihydrodipicolinate Synthase.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002537

By:

Reboul, C. F.;
Porebski, B. T.;
Griffin, M. D. W.;
Dobson, R. C. J.;
Perugini, M. A.;
Gerrard, J. A.;
Buckle, A. M.

Publication type:

Article

Fast Coding of Orientation in Primary Visual Cortex.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002536

By:

Shriki, Oren;
Kohn, Adam;
Shamir, Maoz

Publication type:

Article

Viral Perturbations of Host Networks Reflect Disease Etiology.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002531

By:

Gulbahce, Natali;
Han Yan;
Dricot, Amélie;
Padi, Megha;
Byrdsong, Danielle;
Franchi, Rachel;
Deok-Sun Lee;
Rozenblatt-Rosen, Orit;
Mar, Jessica C.;
Calderwood, Michael A.;
Baldwin, Amy;
Bo Zhao;
Santhanam, Balaji;
Braun, Pascal;
Simonis, Nicolas;
Huh, Kyung-Won;
Hellner, Karin;
Grace, Miranda;
Chen, Alyce;
Rubio, Renee

Publication type:

Article

Fine-Tuning Tomato Agronomic Properties by Computational Genome Redesign.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002528

By:

Carrera, Javier;
Del Carmen, Asun Fernández;
Fernández-Muñoz, Rafael;
Rambla, Jose Luis;
Pons, Clara;
Jaramillo, Alfonso;
Elena, Santiago F.;
Granell, Antonio

Publication type:

Article

Standing Genetic Variation and the Evolution of Drug Resistance in HIV.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002527

By:

Pennings, Pleuni Simone

Publication type:

Article

Visualization and Analysis of 3D Microscopic Images.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002519

By:

Fuhui Long;
Jianlong Zhou;
Hanchuan Peng

Publication type:

Article

Structural Drift: The Population Dynamics of Sequential Learning.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002510

By:

Crutchfield, James P.;
Whalen, Sean

Publication type:

Article

The Role of Non-Native Interactions in the Folding of Knotted Proteins.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002504

By:

Škrbić, Tatjana;
Micheletti, Cristian;
Faccioli, Pietro

Publication type:

Article

Equation-Free Analysis of Two-Component System Signalling Model Reveals the Emergence of Co-Existing Phenotypes in the Absence of Multistationarity.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002396

By:

Hoyle, Rebecca B.;
Avitabile, Daniele;
Kierzek, Andrzej M.

Publication type:

Article

Modelling Cell Polarization Driven by Synthetic Spatially Graded Rac Activation.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002366

By:

Holmes, William R.;
Lin, Benjamin;
Levchenko, Andre;
Edelstein-Keshet, Leah

Publication type:

Article

Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 6, p. 1, doi. 10.1371/journal.pcbi.1002358

By:

Abubucker, Sahar;
Segata, Nicola;
Goll, Johannes;
Schubert, Alyxandria M.;
Izard, Jacques;
Cantarel, Brandi L.;
Rodriguez-Mueller, Beltran;
Zucker, Jeremy;
Thiagarajan, Mathangi;
Henrissat, Bernard;
White, Owen;
Kelley, Scott T.;
Methé, Barbara;
Schloss, Patrick D.;
Gevers, Dirk;
Mitreva, Makedonka;
Huttenhower, Curtis

Publication type:

Article