Works matching IS 1553734X AND DT 2012 AND VI 8 AND IP 3

Results: 53

Circular Permutation in Proteins.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002445

By:

Bliven, Spencer;
Prlić, Andreas

Publication type:

Article

Dynamical Modeling of Collective Behavior from Pigeon Flight Data: Flock Cohesion and Dispersion.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002449

By:

Kattas, Graciano Dieck;
Xiao-Ke Xu;
Small, Michael

Publication type:

Article

The Rate of Beneficial Mutations Surfing on the Wave of a Range Expansion.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002447

By:

Lehe, Rémi;
Hallatschek, Oskar;
Peliti, Luca

Publication type:

Article

Topic Pages: PLoS Computational Biology Meets Wikipedia.

Published in:

2012

By:

Wodak, Shoshana J.;
Mietchen, Daniel;
Collings, Andrew M.;
Russell, Robert B.;
Bourne, Philip E.

Publication type:

Editorial

"Guilt by Association" Is the Exception Rather Than the Rule in Gene Networks.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002444

By:

Gillis, Jesse;
Pavlidis, Paul

Publication type:

Article

Traffic Instabilities in Self-Organized Pedestrian Crowds.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002442

By:

Moussaïd, Mehdi;
Guillot, Elsa G.;
Moreau, Mathieu;
Fehrenbach, Jérôme;
Chabiron, Olivier;
Lemercier, Samuel;
Pettré, Julien;
Appert-Rolland, Cécile;
Degond, Pierre;
Theraulaz, Guy

Publication type:

Article

Decoding Unattended Fearful Faces with Whole-Brain Correlations: An Approach to Identify Condition- Dependent Large-Scale Functional Connectivity.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002441

By:

Pantazatos, Spiro P.;
Talati, Ardesheer;
Pavlidis, Paul;
Hirsch, Joy

Publication type:

Article

Ten Simple Rules for Starting a Company.

Published in:

2012

By:

Fletcher, Anthony C.;
Bourne, Philip E.

Publication type:

Editorial

Dynamic Effective Connectivity of Inter-Areal Brain Circuits.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002438

By:

Battaglia, Demian;
Witt, Annette;
Wolf, Fred;
Geisel, Theo

Publication type:

Article

Comprehensive Modelling of the Neurospora Circadian Clock and Its Temperature Compensation.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002437

By:

Yu-Yao Tseng;
Hunt, Suzanne M.;
Heintzen, Christian;
Crosthwaite, Susan K.;
Schwartz, Jean-Marc

Publication type:

Article

Influence of the Fibroblastic Reticular Network on Cell- Cell Interactions in Lymphoid Organs.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002436

By:

Graw, Frederik;
Regoes, Roland R.

Publication type:

Article

Hemodynamic Traveling Waves in Human Visual Cortex.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002435

By:

Aquino, Kevin M.;
Schira, Mark M.;
Robinson, P. A.;
Drysdale, Peter M.;
Breakspear, Michael

Publication type:

Article

Corresponding Functional Dynamics across the Hsp90 Chaperone Family: Insights from a Multiscale Analysis of MD Simulations.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002433

By:

Morra, Giulia;
Potestio, Raffaello;
Micheletti, Cristian;
Colombo, Giorgio

Publication type:

Article

Feedforward Inhibition and Synaptic Scaling - Two Sides of the Same Coin?

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002432

By:

Keck, Christian;
Savin, Cristina;
Lücke, Jörg

Publication type:

Article

Entropic Tension in Crowded Membranes.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002431

By:

Lindén, Martin;
Sens, Pierre;
Phillips, Rob

Publication type:

Article

Implications of Behavioral Architecture for the Evolution of Self-Organized Division of Labor.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002430

By:

Duarte, A.;
Scholtens, E.;
Weissing, F. J.

Publication type:

Article

Beyond the Binding Site: The Role of the β2 - β3 Loop and Extra-Domain Structures in PDZ Domains.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002429

By:

Mostarda, Stefano;
Gfeller, David;
Rao, Francesco

Publication type:

Article

Collective Dynamics Differentiates Functional Divergence in Protein Evolution.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002428

By:

Glembo, Tyler J.;
Farrell, Daniel W.;
Gerek, Z. Nevin;
Thorpe, M. F.;
Ozkan, S. Banu

Publication type:

Article

A Common Model for Cytokine Receptor Activation: Combined Scissor-Like Rotation and Self-Rotation of Receptor Dimer Induced by Class I Cytokine.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002427

By:

Xiaodong Pang;
Huan-Xiang Zhou

Publication type:

Article

The Impact of Oxygen on Metabolic Evolution: A Chemoinformatic Investigation.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002426

By:

Ying-Ying Jiang;
De-Xin Kong;
Tao Qin;
Xiao Li;
Caetano-Anollés, Gustavo;
Hong-Yu Zhang

Publication type:

Article

Measured Dynamic Social Contact Patterns Explain the Spread of H1N1v Influenza.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002425

By:

Eames, Ken T. D.;
Tilston, Natasha L.;
Brooks-Pollock, Ellen;
Edmunds, W. John

Publication type:

Article

Gradients and Modulation of K<sup>+</sup> Channels Optimize Temporal Accuracy in Networks of Auditory Neurons.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002424

By:

Kaczmarek, Leonard K.

Publication type:

Article

Mechanistic Basis of Branch-Site Selection in Filamentous Bacteria.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002423

By:

Richards, David M.;
Hempel, Antje M.;
Flärdh, Klas;
Buttner, Mark J.;
Howard, Martin

Publication type:

Article

Ensemble Models of Neutrophil Trafficking in Severe Sepsis.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002422

By:

Song, Sang O. K.;
Hogg, Justin;
Zhi-Yong Peng;
Parker, Robert;
Kellum, John A.;
Clermont, Gilles

Publication type:

Article

Cytoskeletal Signaling: Is Memory Encoded in Microtubule Lattices by CaMKII Phosphorylation?

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002421

By:

Craddock, Travis J. A.;
Tuszynski, Jack A.;
Hameroff, Stuart

Publication type:

Article

Conformational Control of the Binding of the Transactivation Domain of the MLL Protein and c-Myb to the KIX Domain of CREB.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002420

By:

Korkmaz, Elif Nihal;
Nussinov, Ruth;
Halilo&gcaron;lu, Türkan

Publication type:

Article

Effect of Network Architecture on Synchronization and Entrainment Properties of the Circadian Oscillations in the Suprachiasmatic Nucleus.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002419

By:

Hafner, Marc;
Koeppl, Heinz;
Gonze, Didier

Publication type:

Article

Living on Three Time Scales: The Dynamics of Plasma Cell and Antibody Populations Illustrated for Hepatitis A Virus.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002418

By:

Andraud, Mathieu;
Lejeune, Olivier;
Musoro, Jammbe Z.;
Ogunjimi, Benson;
Beutels, Philippe;
Hens, Niel

Publication type:

Article

Highly Sensitive and Specific Detection of Rare Variants in Mixed Viral Populations from Massively Parallel Sequence Data.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002417

By:

Macalalad, Alexander R.;
Zody, Michael C.;
Charlebois, Patrick;
Lennon, Niall J.;
Newman, Ruchi M.;
Malboeuf, Christine M.;
Ryan, Elizabeth M.;
Boutwell, Christian L.;
Power, Karen A.;
Brackney, Doug E.;
Pesko, Kendra N.;
Levin, Joshua Z.;
Ebel, Gregory D.;
Allen, Todd M.;
Birren, Bruce W.;
Henn, Matthew R.

Publication type:

Article

Mitochondrial Variability as a Source of Extrinsic Cellular Noise.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002416

By:

Johnston, Iain G.;
Gaal, Bernadett;
Das Neves, Ricardo Pires;
Enver, Tariq;
Iborra, Francisco J.;
Jones, Nick S.

Publication type:

Article

System-Level Insights into Yeast Metabolism by Thermodynamic Analysis of Elementary Flux Modes.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002415

By:

Jol, Stefan J.;
Kümmel, Anne;
Terzer, Marco;
Stelling, Jörg;
Heinemann, Matthias

Publication type:

Article

Does Sex Speed Up Evolutionary Rate and Increase Biodiversity?

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002414

By:

Melián, Carlos J.;
Alonso, David;
Allesina, Stefano;
Condit, Richard S.;
Etienne, Rampal S.

Publication type:

Article

Inferring Epidemic Contact Structure from Phylogenetic Trees.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002413

By:

Leventhal, Gabriel E.;
Kouyos, Roger;
Stadler, Tanja;
Von Wyl, Viktor;
Yerly, Sabine;
Böni, Jürg;
Cellerai, Cristina;
Klimkait, Thomas;
Günthard, Huldrych F.;
Bonhoeffer, Sebastian

Publication type:

Article

Degenerate T-cell Recognition of Peptides on MHC Molecules Creates Large Holes in the T-cell Repertoire.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002412

By:

Calis, Jorg J. A.;
De Boer, Rob J.;
Keşmir, Can

Publication type:

Article

Network Evolution: Rewiring and Signatures of Conservation in Signaling.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002411

By:

Sun, Mark G. F.;
Sikora, Martin;
Costanzo, Michael;
Boone, Charles;
Kim, Philip M.

Publication type:

Article

Bonsai Trees in Your Head: How the Pavlovian System Sculpts Goal-Directed Choices by Pruning Decision Trees.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002410

By:

Huys, Quentin J. M.;
Eshel, Neir;
O'Nions, Elizabeth;
Sheridan, Luke;
Dayan, Peter;
Roiser, Jonathan P.

Publication type:

Article

Changes in Lysozyme Flexibility upon Mutation Are Frequent, Large and Long-Ranged.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002409

By:

Verma, Deeptak;
Jacobs, Donald J.;
Livesay, Dennis R.

Publication type:

Article

Impact of Network Structure and Cellular Response on Spike Time Correlations.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002408

By:

Trousdale, James;
Yu Hu;
Shea-Brown, Eric;
Josić, Krešimir

Publication type:

Article

Thermodynamic State Ensemble Models of cis-Regulation.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002407

By:

Sherman, Marc S.;
Cohen, Barak A.

Publication type:

Article

Modelling the Self-Assembly of Elastomeric Proteins Provides Insights into the Evolution of Their Domain Architectures.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002406

By:

Hongyan Song;
Parkinson, John

Publication type:

Article

Neurogenesis Drives Stimulus Decorrelation in a Model of the Olfactory Bulb.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002398

By:

Siu-Fai Chow;
Wick, Stuart D.;
Riecke, Hermann

Publication type:

Article

Cortical Surround Interactions and Perceptual Salience via Natural Scene Statistics.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002405

By:

Coen-Cagli, Ruben;
Dayan, Peter;
Schwartz, Odelia

Publication type:

Article

Exploring the Evolution of Novel Enzyme Functions within Structurally Defined Protein Superfamilies.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002403

By:

Furnham, Nicholas;
Sillitoe, Ian;
Holliday, Gemma L.;
Cuff, Alison L.;
Laskowski, Roman A.;
Orengo, Christine A.;
Thornton, Janet M.

Publication type:

Article

How Cells Integrate Complex Stimuli: The Effect of Feedback from Phosphoinositides and Cell Shape on Cell Polarization and Motility.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002402

By:

Marée, Athanasius F. M.;
Grieneisen, Verônica A.;
Edelstein-Keshet, Leah

Publication type:

Article

A Self-Organizing State-Space-Model Approach for Parameter Estimation in Hodgkin-Huxley-Type Models of Single Neurons.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002401

By:

Vavoulis, Dimitrios V.;
Straub, Volko A.;
Aston, John A. D.;
Jianfeng Feng

Publication type:

Article

Uncovering the Dynamics of Cardiac Systems Using Stochastic Pacing and Frequency Domain Analyses.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002399

By:

Lemay, Mathieu;
De Lange, Enno;
Kucera, Jan P.

Publication type:

Article

Epitope Flexibility and Dynamic Footprint Revealed by Molecular Dynamics of a pMHC-TCR Complex.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002404

By:

Reboul, Cyril F.;
Meyer, Grischa R.;
Porebski, Benjamin T.;
Borg, Natalie A.;
Buckle, Ashley M.

Publication type:

Article

AutoClickChem: Click Chemistry in Silico.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002397

By:

Durrant, Jacob D.;
McCammon, J. Andrew

Publication type:

Article

Neural Network Mechanisms Underlying Stimulus Driven Variability Reduction.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002395

By:

Deco, Gustavo;
Hugues, Etienne

Publication type:

Article

Depression-Biased Reverse Plasticity Rule Is Required for Stable Learning at Top-Down Connections.

Published in:

PLoS Computational Biology, 2012, v. 8, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002393

By:

Burbank, Kendra S.;
Kreiman, Gabriel

Publication type:

Article