Works matching IS 1553734X AND DT 2011 AND VI 7 AND IP 5

Results: 34

Cellularly-Driven Differences in Network Synchronization Propensity Are Differentially Modulated by Firing Frequency.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002062

By:

Fink, Christian G.;
Booth, Victoria;
Zochowski, Michal

Publication type:

Article

Simulating the Mammalian Blastocyst - Molecular and Mechanical Interactions Pattern the Embryo.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1001128

By:

Krupinski, Pawel;
Chickarmane, Vijay;
Peterson, Carsten

Publication type:

Article

Distributions of Transposable Elements Reveal Hazardous Zones in Mammalian Introns.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002046

By:

Ying Zhang;
Romanish, Mark T.;
Mager, Dixie L.

Publication type:

Article

Combinations of Protein-Chemical Complex Structures Reveal New Targets for Established Drugs.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002043

By:

Kalinina, Olga V.;
Wichmann, Oliver;
Apic, Gordana;
Russell, Robert B.

Publication type:

Article

Temporal Encoding in a Nervous System.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002041

By:

Aldworth, Zane N.;
Dimitrov, Alexander G.;
Cummins, Graham I.;
Gedeon, Tomásš;
Miller, John P.

Publication type:

Article

Gene Expression in the Rodent Brain is Associated with Its Regional Connectivity.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002040

By:

Wolf, Lior;
Goldberg, Chen;
Manor, Nathan;
Sharan, Roded;
Ruppin, Eytan

Publication type:

Article

How Molecular Motors Are Arranged on a Cargo Is Important for Vesicular Transport.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002032

By:

Erickson, Robert P.;
Zhiyuan Jia;
Gross, Steven P.;
Yu, Clare C.

Publication type:

Article

Identification of Hammerhead Ribozymes in All Domains of Life Reveals Novel Structural Variations.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002031

By:

Perreault, Jonathan;
Weinberg, Zasha;
Roth, Adam;
Popescu, Olivia;
Chartrand, Pascal;
Ferbeyre, Gerardo;
Breaker, Ronald R.

Publication type:

Article

Modeling Evolutionary Dynamics of Epigenetic Mutations in Hierarchically Organized Tumors.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1001132

By:

Sottoriva, Andrea;
Vermeulen, Louis;
Tavaré, Simon

Publication type:

Article

Detecting Network Communities: An Application to Phylogenetic Analysis.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1001131

By:

Andrade, Roberto F. S.;
Rocha-Neto, Ivan C.;
Santos, Leonardo B. L.;
de Santana, Charles N.;
Diniz, Marcelo V. C.;
Lobao, Thierry Petit;
Goés-Neto, Aristóteles;
Pinho, Suani T. R.;
El-Hani, Charbel N.

Publication type:

Article

Feedback Control Architecture and the Bacterial Chemotaxis Network.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1001130

By:

Hamadeh, Abdullah;
Roberts, Mark A. J.;
August, Elias;
McSharry, Patrick E.;
Maini, Philip K.;
Armitage, Judith P.;
Papachristodoulou, Antonis

Publication type:

Article

Impact of Fast Sodium Channel Inactivation on Spike Threshold Dynamics and Synaptic Integration.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1001129

By:

Platkiewicz, Jonathan;
Brette, Romain

Publication type:

Article

Theoretical Model for Cellular Shapes Driven by Protrusive and Adhesive Forces.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1001127

By:

Kabaso, Doron;
Shlomovitz, Roie;
Schloen, Kathrin;
Stradal, Theresia;
Gov, Nir S.

Publication type:

Article

Quantitative Epistasis Analysis and Pathway Inference from Genetic Interaction Data.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002048

By:

Phenix, Hilary;
Morin, Katy;
Batenchuk, Cory;
Parker, Jacob;
Abedi, Vida;
Liu Yang;
Tepliakova, Lioudmila;
Perkins, Theodore J.;
Kærn, Mads

Publication type:

Article

Emergence of Switch-Like Behavior in a Large Family of Simple Biochemical Networks.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002039

By:

Siegal-Gaskins, Dan;
Mejia-Guerra, Maria Katherine;
Smith, Gregory D.;
Grotewold, Erich

Publication type:

Article

Exhaustive Sampling of Docking Poses Reveals Binding Hypotheses for Propafenone Type Inhibitors of P-Glycoprotein.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002036

By:

Klepsch, Freya;
Chiba, Peter;
Ecker, Gerhard F.

Publication type:

Article

Transcriptional Regulation: Effects of Promoter Proximal Pausing on Speed, Synchrony and Reliability.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1001136

By:

Boettiger, Alistair N.;
Ralph, Peter L.;
Evans, Steven N.

Publication type:

Article

Epistasis in a Model of Molecular Signal Transduction.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1001134

By:

Pumir, Alain;
Shraiman, Boris

Publication type:

Article

An Imperfect Dopaminergic Error Signal Can Drive Temporal-Difference Learning.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1001133

By:

Potjans, Wiebke;
Diesmann, Markus;
Morrison, Abigail

Publication type:

Article

How Structure Determines Correlations in Neuronal Networks.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002059

By:

Pernice, Volker;
Staude, Benjamin;
Cardanobile, Stefano;
Rotter, Stefan

Publication type:

Article

Attracting Dynamics of Frontal Cortex Ensembles during Memory-Guided Decision-Making.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002057

By:

Balaguer-Ballester, Emili;
Lapish, Christopher C.;
Seamans, Jeremy K.;
Durstewitz, Daniel

Publication type:

Article

A Multiscale Approach to Characterize the Early Aggregation Steps of the Amyloid-Forming Peptide GNNQQNY from the Yeast Prion Sup-35.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002051

By:

Nasica-Labouze, Jessica;
Meli, Massimiliano;
Derreumaux, Philippe;
Colombo, Giorgio;
Mousseau, Normand

Publication type:

Article

Integrative Analysis of Transgenic Alfalfa (Medicago sativa L.) Suggests New Metabolic Control Mechanisms for Monolignol Biosynthesis.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002047

By:

Yun Lee;
Fang Chen;
Gallego-Giraldo, Lina;
Dixon, Richard A.;
Voit, Eberhard O.

Publication type:

Article

Spatial Learning and Action Planning in a Prefrontal Cortical Network Model.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002045

By:

Martinet, Louis-Emmanuel;
Sheynikhovich, Denis;
Benchenane, Karim;
Arleo, Angelo

Publication type:

Article

Topological Cluster Analysis Reveals the Systemic Organization of the Caenorhabditis elegans Connectome.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1001139

By:

Yunkyu Sohn;
Myung-Kyu Choi;
Yong-Yeol Ahn;
Junho Lee;
Jaeseung Jeong

Publication type:

Article

deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1001138

By:

McPherson, Andrew;
Hormozdiari, Fereydoun;
Zayed, Abdalnasser;
Giuliany, Ryan;
Ha, Gavin;
Sun, Mark G. F.;
Griffith, Malachi;
Moussavi, Alireza Heravi;
Janine6Senz;
Melnyk, Nataliya;
Pacheco, Marina;
Marra, Marco A.;
Hirst, Martin;
Nielsen, Torsten O.;
Sahinalp, S. Cenk;
Huntsman, David;
Shah, Sohrab P.

Publication type:

Article

A Toolbox Model of Evolution of Metabolic Pathways on Networks of Arbitrary Topology.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1001137

By:

Tin Yau Pang;
Maslov, Sergei

Publication type:

Article

Simulation of the Undiseased Human Cardiac Ventricular Action Potential: Model Formulation and Experimental Validation.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 2, doi. 10.1371/journal.pcbi.1002061

By:

O'Hara, Thomas;
Virág, László;
Varró, András;
Rudy, Yoram

Publication type:

Article

An Acidic Loop and Cognate Phosphorylation Sites Define a Molecular Switch That Modulates Ubiquitin Charging Activity in Cdc34-Like Enzymes.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002056

By:

Papaleo, Elena;
Ranzani, Valeria;
Tripodi, Farida;
Vitrio, Alessandro;
Cirulli, Claudia;
Fantucci, Piercarlo;
Alberghina, Lilia;
Vanoni, Marco;
De Gioia, Luca;
Coccetti, Paola

Publication type:

Article

Speed/Accuracy Trade-Off between the Habitual and the Goal-Directed Processes.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002055

By:

Keramati, Mehdi;
Dezfouli, Amir;
Piray, Payam

Publication type:

Article

A Role for Both Conformational Selection and Induced Fit in Ligand Binding by the LAO Protein.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002054

By:

Silva, Daniel-Adriano;
Bowman, Gregory R.;
Sosa-Peinado, Alejandro;
Xuhui Huang

Publication type:

Article

How Modeling Can Reconcile Apparently Discrepant Experimental Results: The Case of Pacemaking in Dopaminergic Neurons.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002050

By:

Drion, Guillaume;
Massotte, Laurent;
Sepulchre, Rodolphe;
Seutin, Vincent

Publication type:

Article

Pathway Analysis of Expression Data: Deciphering Functional Building Blocks of Complex Diseases.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002053

By:

Emmert-Streib, Frank;
Glazko, Galina V.

Publication type:

Article

Ten Simple Rules for Providing a Scientific Web Resource.

Published in:

PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1001126

By:

Schultheiss, Sebastian J.

Publication type:

Article