Works matching IS 1553734X AND DT 2010 AND VI 6 AND IP 8

Results: 41

Nonlinear Gap Junctions Enable Long-Distance Propagation of Pulsating Calcium Waves in Astrocyte Networks.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000909

By:

Goldberg, Mati;
De Pitta, Maurizio;
Volman, Vladislav;
Berry, Hugues;
Ben-Jacob, Eshel

Publication type:

Article

An Introduction to Biomolecular Graphics.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000918

By:

Mura, Cameron;
McCrimmon, Colin M.;
Vertrees, Jason;
Sawaya, Michael R.

Publication type:

Article

A Mechanistic View of the Role of E3 in Sumoylation.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000913

By:

Tozluoğlu, Melda;
Karaca, Ezgi;
Nussinov, Ruth;
Haliloğlu, Türkan

Publication type:

Article

Modeling and Dynamics of the Inward-Facing State of a Na<sup>+</sup>/Cl<sup>-</sup> Dependent Neurotransmitter Transporter Homologue.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000905

By:

Shaikh, Saher Afshan;
Tajkhorshid, Emad

Publication type:

Article

Gene Expression Variability within and between Human Populations and Implications toward Disease Susceptibility.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000910

By:

Jingjing Li;
Yu Liu;
TaeHyung Kim;
Renqiang Min;
Zhaolei Zhang

Publication type:

Article

A Simple Self-Maintaining Metabolic System: Robustness, Autocatalysis, Bistability.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000872

By:

Piedrafita, Gabriel;
Montero, Francisco;
Morán, Federico;
Luz Cárdenas, María;
Cornish-Bowden, Athel

Publication type:

Article

Computational Prediction and Experimental Verification of New MAP Kinase Docking Sites and Substrates Including Gli Transcription Factors.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000908

By:

Whisenant, Thomas C.;
Ho, David T.;
Benz, Ryan W.;
Rogers, Jeffrey S.;
Kaake, Robyn M.;
Gordon, Elizabeth A.;
Lan Huang;
Baldi, Pierre;
Bardwell, Lee

Publication type:

Article

Evolution under Fluctuating Environments Explains Observed Robustness in Metabolic Networks.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000907

By:

Soyer, Orkun S.;
Pfeiffer, Thomas

Publication type:

Article

Evidence of Functional Protein Dynamics from X-Ray Crystallographic Ensembles.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000911

By:

Kohn, Jonathan E.;
Afonine, Pavel V.;
Ruscio, Jory Z.;
Adams, Paul D.;
Head-Gordon, Teresa

Publication type:

Article

Reverse Engineering of Oxygen Transport in the Lung: Adaptation to Changing Demands and Resources through Space-Filling Networks.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000902

By:

Chen Hou;
Gheorghiu, Stefan;
Huxley, Virginia H.;
Pfeifer, Peter

Publication type:

Article

Similar Impact of CD8+ T Cell Responses on Early Virus Dynamics during SIV Infections of Rhesus Macaques and Sooty Mangabeys.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000901

By:

Kouyos, Roger D.;
Gordon, Shari N.;
Staprans, Silvija I.;
Silvestri, Guido;
Regoes, Roland R.

Publication type:

Article

Linking Changes in Epithelial Morphogenesis to Cancer Mutations Using Computational Modeling.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000900

By:

Rejniak, Katarzyna A.;
Wang, Shizhen E.;
Bryce, Nicole S.;
Hang Chang;
Parvin, Bahram;
Jourquin, Jerome;
Estrada, Lourdes;
Gray, Joe W.;
Arteaga, Carlos L.;
Weaver, Alissa M.;
Quaranta, Vito;
Anderson, Alexander R. A.

Publication type:

Article

Dendritic Spikes Amplify the Synaptic Signal to Enhance Detection of Motion in a Simulation of the Direction-Selective Ganglion Cell.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000899

By:

Schachter, Michael J.;
Oesch, Nicholas;
Smith, Robert G.;
Taylor, W. Rowland

Publication type:

Article

A Cervid Vocal Fold Model Suggests Greater Glottal Efficiency in Calling at High Frequencies.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000897

By:

Titze, Ingo R.;
Riede, Tobias

Publication type:

Article

Modeling Chemotaxis Reveals the Role of Reversed Phosphotransfer and a Bi-Functional Kinase-Phosphatase.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000896

By:

Tindall, Marcus J.;
Porter, Steven L.;
Maini, Philip K.;
Armitage, Judith P.

Publication type:

Article

Adaptive Contact Networks Change Effective Disease Infectiousness and Dynamics.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000895

By:

Van Segbroeck, Sven;
Santos, Francisco C.;
Pacheco, Jorge M.

Publication type:

Article

Reinforcement Learning on Slow Features of High-Dimensional Input Streams.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000894

By:

Legenstein, Robert;
Wilbert, Niko;
Wiskott, Laurenz

Publication type:

Article

Reduction in Learning Rates Associated with Anterograde Interference Results from Interactions between Different Timescales in Motor Adaptation.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000893

By:

Sing, Gary C.;
Smith, Maurice A.

Publication type:

Article

Frequency-Dependent Selection Predicts Patterns of Radiations and Biodiversity.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000892

By:

Melián, Carlos J.;
Alonso, David;
Vázquez, Diego P.;
Regetz, James;
Allesina, Stefano

Publication type:

Article

Quantitative Test of the Barrier Nucleosome Model for Statistical Positioning of Nucleosomes Up- and Downstream of Transcription Start Sites.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000891

By:

Möbius, Wolfram;
Gerland, Ulrich

Publication type:

Article

Mathematical Description of Bacterial Traveling Pulses.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000890

By:

Saragosti, Jonathan;
Calvez, Vincent;
Bournaveas, Nikolaos;
Buguin, Axel;
Silberzan, Pascal;
Perthame, Benoít

Publication type:

Article

Use of Data-Biased Random Walks on Graphs for the Retrieval of Context-Specific Networks from Genomic Data.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000889

By:

Komurov, Kakajan;
White, Michael A.;
Ram, Prahlad T.

Publication type:

Article

MetMap Enables Genome-Scale Methyltyping for Determining Methylation States in Populations.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000888

By:

Singer, Meromit;
Boffelli, Dario;
Dhahbi, Joseph;
Schönhuth, Alexander;
Schroth, Gary P.;
Martin, David I. K.;
Pachter, Lior

Publication type:

Article

Characterizing the Metabolism of Dehalococcoides with a Constraint-Based Model.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000887

By:

Islam, M. Ahsanul;
Edwards, Elizabeth A.;
Mahadevan, Radhakrishnan

Publication type:

Article

Stochastic Ion Channel Gating in Dendritic Neurons: Morphology Dependence and Probabilistic Synaptic Activation of Dendritic Spikes.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000886

By:

Cannon, Robert C.;
O'Donnell, Cian;
Nolan, Matthew F.

Publication type:

Article

CodonTest: Modeling Amino Acid Substitution Preferences in Coding Sequences.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000885

By:

Delport, Wayne;
Scheffler, Konrad;
Botha, Gordon;
Gravenor, Mike B.;
Muse, Spencer V.;
Pond, Sergei L. Kosakovsky

Publication type:

Article

Induced Effects of Sodium Ions on Dopaminergic G-Protein Coupled Receptors.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000884

By:

Selent, Jana;
Sanz, Ferran;
Pastor, Manuel;
De Fabritiis, Gianni

Publication type:

Article

Computational Models of HIV-1 Resistance to Gene Therapy Elucidate Therapy Design Principles.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000883

By:

Aviran, Sharon;
Shah, Priya S.;
Schaffer, David V.;
Arkin, Adam P.

Publication type:

Article

Correlation of Influenza Virus Excess Mortality with Antigenic Variation: Application to Rapid Estimation of Influenza Mortality Burden.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000882

By:

Aiping Wu;
Yousong Peng;
Xiangjun Du;
Yuelong Shu;
Taijiao Jiang

Publication type:

Article

VASP: A Volumetric Analysis of Surface Properties Yields Insights into Protein-Ligand Binding Specificity.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000881

By:

Chen, Brian Y.;
Honig, Barry

Publication type:

Article

Computational Analysis of Phosphopeptide Binding to the Polo-Box Domain of the Mitotic Kinase PLK1 Using Molecular Dynamics Simulation.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000880

By:

Huggins, David J.;
McKenzie, Grahame J.;
Robinson, Daniel D.;
Narváez, Ana J.;
Hardwick, Bryn;
Roberts-Thomson, Meredith;
Venkitaraman, Ashok R.;
Grant, Guy H.;
Payne, Mike C.

Publication type:

Article

Spike-Timing Theory of Working Memory.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000879

By:

Szatmáry, Botond;
Izhikevich, Eugene M.

Publication type:

Article

Lysine 120 Interactions with p53 Response Elements can Allosterically Direct p53 Organization.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000878

By:

Yongping Pan;
Nussinov, Ruth

Publication type:

Article

One Rule to Grow Them All: A General Theory of Neuronal Branching and Its Practical Application.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000877

By:

Cuntz, Hermann;
Forstner, Friedrich;
Borst, Alexander;
Häusser, Michael

Publication type:

Article

Connectivity, Cycles, and Persistence Thresholds in Metapopulation Networks.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000876

By:

Artzy-Randrup, Yael;
Stone, Lewi

Publication type:

Article

A Model for a Correlated Random Walk Based on the Ordered Extension of Pseudopodia.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000874

By:

Van Haastert, Peter J. M.

Publication type:

Article

Evolution of Gene Regulatory Networks by Fluctuating Selection and Intrinsic Constraints.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000873

By:

Tsuda, Masaki E.;
Kawata, Masakado

Publication type:

Article

Probability Matching as a Computational Strategy Used in Perception.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000871

By:

Wozny, David R.;
Beierholm, Ulrik R.;
Shams, Ladan

Publication type:

Article

Calcium Signals Driven by Single Channel Noise.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000870

By:

Skupin, Alexander;
Kettenmann, Helmut;
Falcke, Martin

Publication type:

Article

Continuous Attractors with Morphed/Correlated Maps.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000869

By:

Romani, Sandro;
Tsodyks, Misha

Publication type:

Article

A Bayesian Approach to the Evolution of Metabolic Networks on a Phylogeny.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 8, p. 1, doi. 10.1371/journal.pcbi.1000868

By:

Mithani, Aziz;
Preston, Gail M.;
Hein, Jotun

Publication type:

Article