Works matching IS 1553734X AND DT 2010 AND VI 6 AND IP 6

Results: 37

2010 ISCB Overton Prize Awarded to Steven E. Brenner.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000831

By:

Morrison McKay, B. J.;
Sansom, Clare

Publication type:

Article

The 20S Proteasome Splicing Activity Discovered by SpliceMet.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000830

By:

Liepe, Juliane;
Mishto, Michele;
Textoris-Taube, Kathrin;
Janek, Katharina;
Keller, Christin;
Henklein, Petra;
Kloetzel, Peter Michael;
Zaikin, Alexey

Publication type:

Article

Atomic-Resolution Simulations Predict a Transition State for Vesicle Fusion Defined by Contact of a Few Lipid Tails.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000829

By:

Kasson, Peter M.;
Lindahl, Erik;
Pande, Vijay S.

Publication type:

Article

Plato's Cave Algorithm: Inferring Functional Signaling Networks from Early Gene Expression Shadows.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000828

By:

Shimoni, Yishai;
Fink, Marc Y.;
Soon-gang Choi;
Sealfon, Stuart C.

Publication type:

Article

Multiscale Coarse-Graining of the Protein Energy Landscape.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000827

By:

Hills Jr., Ronald D.;
Lanyuan Lu;
Voth, Gregory A.

Publication type:

Article

Mammalian Sleep Dynamics: How Diverse Features Arise from a Common Physiological Framework.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000826

By:

Phillips, Andrew J. K.;
Robinson, Peter A.;
Kedziora, David J.;
Abeysuriya, Romesh G.

Publication type:

Article

Slope-Based Stochastic Resonance: How Noise Enables Phasic Neurons to Encode Slow Signals.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000825

By:

Yan Gai;
Doiron, Brent;
Rinzel, John

Publication type:

Article

Computational Prediction and Experimental Assessment of Secreted/Surface Proteins from Mycobacterium tuberculosis H37Rv.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000824

By:

Vizcaíno, Carolina;
Restrepo-Montoya, Daniel;
Rodríguez, Diana;
Niño, Luis F.;
Ocampo, Marisol;
Vanegas, Magnolia;
Reguero, María T.;
Martínez^1,3, Nora L.;
Patarroyo^, Manuel E.;
Patarroyo, Manuel A.

Publication type:

Article

TRANSAT--A Method for Detecting the Conserved Helices of Functional RNA Structures, Including Transient, Pseudo-Knotted and Alternative Structures.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000823

By:

Wiebe, Nicholas J. P.;
Meyer, Irmtraud M.

Publication type:

Article

Constraint-Based Model of Shewanella oneidensis MR-1 Metabolism: A Tool for Data Analysis and Hypothesis Generation.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000822

By:

Pinchuk, Grigoriy E.;
Hill, Eric A.;
Geydebrekht, Oleg V.;
De Ingeniis, Jessica;
Xiaolin Zhang;
Osterman, Andrei;
Scott, James H.;
Reed, Samantha B.;
Romine, Margaret F.;
Konopka, Allan E.;
Beliaev, Alexander S.;
Fredrickson, Jim K.;
Reed, Jennifer L.

Publication type:

Article

Beauty Is in the Eye of the Beholder: Proteins Can Recognize Binding Sites of Homologous Proteins in More than One Way.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000821

By:

Martin, Juliette

Publication type:

Article

Rule-Based Cell Systems Model of Aging using Feedback Loop Motifs Mediated by Stress Responses.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000820

By:

Kriete, Andres;
Bosl, William J.;
Booker, Glenn

Publication type:

Article

A Cell-Based Model for Quorum Sensing in Heterogeneous Bacterial Colonies.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000819

By:

Melke, Pontus;
Sahlin, Patrik;
Levchenko, Andre;
Jönsson, Henrik

Publication type:

Article

Fast- or Slow-inactivated State Preference of Na<sup>+</sup> Channel Inhibitors: A Simulation and Experimental Study.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000818

By:

Karoly, Robert;
Lenkey, Nora;
Juhasz, Andras O.;
Vizi, E. Sylvester;
Mike, Arpad

Publication type:

Article

Revisiting Date and Party Hubs: Novel Approaches to Role Assignment in Protein Interaction Networks.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000817

By:

Agarwal, Sumeet;
Deane, Charlotte M.;
Porter, Mason A.;
Jones, Nick S.

Publication type:

Article

Using Entropy Maximization to Understand the Determinants of Structural Dynamics beyond Native Contact Topology.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000816

By:

Lezon, Timothy R.;
Bahar, Ivet

Publication type:

Article

NeuroML: A Language for Describing Data Driven Models of Neurons and Networks with a High Degree of Biological Detail.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000815

By:

Gleeson, Padraig;
Crook, Sharon;
Cannon, Robert C.;
Hines, Michael L.;
Billings, Guy O.;
Farinella, Matteo;
Morse, Thomas M.;
Davison, Andrew P.;
Ray, Subhasis;
Bhalla, Upinder S.;
Simon R.6Barnes;
Dimitrova, Yoana D.;
Silver, R. Angus

Publication type:

Article

Nonlinearity of Mechanochemical Motions in Motor Proteins.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000814

By:

Togashi, Yuichi;
Yanagida, Toshio;
Mikhailov, Alexander S.

Publication type:

Article

Combinatorial Gene Regulation Using Auto-Regulation.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000813

By:

Hermsen, Rutger;
Ursem, Bas;
Wolde, Pieter Rein ten

Publication type:

Article

The Carbon Assimilation Network in Escherichia coli Is Densely Connected and Largely Sign-Determined by Directions of Metabolic Fluxes.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000812

By:

Baldazzi, Valentina;
Ropers, Delphine;
Markowicz, Yves;
Kahn, Daniel;
Geiselmann, Johannes;
de Jong, Hidde

Publication type:

Article

Does Mutational Robustness Inhibit Extinction by Lethal Mutagenesis in Viral Populations?

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000811

By:

O'Dea, Eamon B.;
Keller, Thomas E.;
Wilke, Claus O.

Publication type:

Article

Polarizable Water Model for the Coarse-Grained MARTINI Force Field.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000810

By:

Yesylevskyy, Semen O.;
Schäfer, Lars V.;
Sengupta, Durba;
Marrink, Siewert J.

Publication type:

Article

The Roots of Bioinformatics.

Published in:

2010

By:

Searls, David B.

Publication type:

Opinion

The Organization of Local and Distant Functional Connectivity in the Human Brain.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000808

By:

Sepulcre, Jorge;
Hesheng Liu;
Talukdar, Tanveer;
Martincorena, Iñigo;
Thomas Yeo, B. T.;
Buckner, Randy L.

Publication type:

Article

Protein-Protein Interactions Essentials: Key Concepts to Building and Analyzing Interactome Networks.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000807

By:

De Las Rivas, Javier;
Fontanillo, Celia

Publication type:

Article

Functional Rotation of the Transporter AcrB: Insights into Drug Extrusion from Simulations.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000806

By:

Schulz, Robert;
Vargiu, Attilio V.;
Collu, Francesca;
Kleinekathöfer, Ulrich;
Ruggerone, Paolo

Publication type:

Article

Rapid Transition towards the Division of Labor via Evolution of Developmental Plasticity.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000805

By:

Gavrilets, Sergey

Publication type:

Article

Enhancement of Transport Selectivity through Nano-Channels by Non-Specific Competition.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000804

By:

Zilman, Anton;
Di Talia, Stefano;
Jovanovic-Talisman, Tijana;
Chait, Brian T.;
Rout, Michael P.;
Magnasco, Marcelo O.

Publication type:

Article

Bistable, Irregular Firing and Population Oscillations in a Modular Attractor Memory Network.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000803

By:

Lundqvist, Mikael;
Compte, Albert;
Lansner, Anders

Publication type:

Article

Achieving Optimal Growth through Product Feedback Inhibition in Metabolism.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000802

By:

Goyal, Sidhartha;
Jie Yuan;
Chen, Thomas;
Rabinowitz, Joshua D.;
Wingreen, Ned S.

Publication type:

Article

Symmetric Allosteric Mechanism of Hexameric Escherichia coli Arginine Repressor Exploits Competition between L-Arginine Ligands and Resident Arginine Residues.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000801

By:

Strawn, Rebecca;
Melichercik, Milan;
Green, Michael;
Stockner, Thomas;
Carey, Jannette;
Ettrich, Rüdiger

Publication type:

Article

Optimality of Mutation and Selection in Germinal Centers.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000800

By:

Jingshan Zhang;
Shakhnovich, Eugene I.

Publication type:

Article

Characterization of Growth and Metabolism of the Haloalkaliphile Natronomonas pharaonis.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000799

By:

Gonzalez, Orland;
Oberwinkler, Tanja;
Mansueto, Locedie;
Pfeiffer, Friedhelm;
Mendoza, Eduardo;
Zimmer, Ralf;
Oesterhelt, Dieter

Publication type:

Article

Expansion of the Protein Repertoire in Newly Explored Environments: Human Gut Microbiome Specific Protein Families.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000798

By:

Ellrott, Kyle;
Jaroszewski, Lukasz;
Weizhong Li;
Wooley, John C.;
Godzik, Adam

Publication type:

Article

Maturation of GABAergic Inhibition Promotes Strengthening of Temporally Coherent Inputs among Convergent Pathways.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000797

By:

Kuhlman, Sandra J.;
Jiangteng Lu;
Lazarus, Matthew S.;
Huang, Z. Josh

Publication type:

Article

Optimal Drug Synergy in Antimicrobial Treatments.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000796

By:

Torella, Joseph Peter;
Chait, Remy;
Kishony, Roy

Publication type:

Article

Optimal Workloop Energetics of Muscle-Actuated Systems: An Impedance Matching View.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000795

By:

Farahat, Waleed A.;
Herr, Hugh M.

Publication type:

Article