Works matching IS 1553734X AND DT 2009 AND VI 5 AND IP 9

Results: 62

Integrating Extrinsic and Intrinsic Cues into a Minimal Model of Lineage Commitment for Hematopoietic Progenitors.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000518

By:

Palani, Santhosh;
Sarkar, Casim A.

Publication type:

Article

Network-State Modulation of Power-Law Frequency- Scaling in Visual Cortical Neurons.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000519

By:

El Boustani, Sami;
Marre, Olivier;
Béhuret, Sébastien;
Baudot, Pierre;
Yger, Pierre;
Bal, Thierry;
Destexhe, Alain;
Frégnac, Yves

Publication type:

Article

Bayesian Phylogeography Finds Its Roots.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000520

By:

Lemey, Philippe;
Rambaut, Andrew;
Drummond, Alexei J.;
Suchard, Marc A.

Publication type:

Article

Chemically Based Mathematical Model for Development of Cerebral Cortical Folding Patterns.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000524

By:

Striegel, Deborah A.;
Hurdal, Monica K.

Publication type:

Article

Statistical Use of Argonaute Expression and RISC Assembly in microRNA Target Identification.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000516

By:

Stanhope, Stephen A.;
Sengupta, Srikumar;
den Boon, Johan;
Ahlquist, Paul;
Newton, Michael A.

Publication type:

Article

Disease-Aging Network Reveals Significant Roles of Aging Genes in Connecting Genetic Diseases.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000521

By:

Jiguang Wang;
Shihua Zhang;
Yong Wang;
Luonan Chen;
Xiang-Sun Zhang

Publication type:

Article

A Computational Analysis of ATP Binding of SV40 Large Tumor Antigen Helicase Motor.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000514

By:

Yemin Shi;
Hanbin Liu;
Dahai Gai;
Jianpeng Ma;
Xiaojiang S. Chen

Publication type:

Article

Ten Simple Rules for Chairing a Scientific Session.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000517

By:

Bateman, Alex;
Bourne, Philip E.

Publication type:

Article

A Novel Scoring Approach for Protein Co-Purification Data Reveals High Interaction Specificity.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000515

By:

Xueping Yu;
Ivanic, Joseph;
Wallqvist, Anders;
Reifman, Jaques

Publication type:

Article

Brief Overview of Bioinformatics Activities in Singapore.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000508

By:

Eisenhaber, Frank;
Chee-Keong Kwoh;
See-Kiong Ng;
Wing-King Sung;
Limsoon Wong

Publication type:

Article

Conserved Expression Patterns Predict microRNA Targets.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000513

By:

Ritchie, William;
Rajasekhar, Megha;
Flamant, Stephane;
Rasko, John E. J.

Publication type:

Article

Transcriptional Profiling of the Dose Response: A More Powerful Approach for Characterizing Drug Activities.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000512

By:

Rui-Ru Ji;
de Silva, Heshani;
Yisheng Jin;
Bruccoleri, Robert E.;
Jian Cao;
Aiqing He;
Wenjun Huang;
Kayne, Paul S.;
Neuhaus, Isaac M.;
Ott, Karl-Heinz;
Penhallow, Becky;
Cockett, Mark I.;
Neubauer, Michael G.;
Siemers, Nathan O.;
Ross-Macdonald, Petra

Publication type:

Article

Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000502

By:

Hoffmann, Steve;
Otto, Christian;
Kurtz, Stefan;
Sharma, Cynthia M.;
Khaitovich, Philipp;
Vogel, Jörg;
Stadler, Peter F.;
Hackermüller, Jörg

Publication type:

Article

A Statistical Model to Identify Differentially Expressed Proteins in 2D PAGE Gels.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000509

By:

Wu, Steven H.;
Black, Michael A.;
North, Robyn A.;
Atkinson, Kelly R.;
Rodrigo, Allen G.

Publication type:

Article

Estimating the Continuous-Time Dynamics of Energy and Fat Metabolism in Mice.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000511

By:

Juen Guo;
Hall, Kevin D.

Publication type:

Article

Noise Management by Molecular Networks.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000506

By:

Bruggeman, Frank J.;
Blüthgen, Nils;
Westerhoff, Hans V.

Publication type:

Article

Human miRNA Precursors with Box H/ACA snoRNA Features.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000507

By:

Scott, Michelle S.;
Avolio, Fabio;
Motoharu Ono;
Lamond, Angus I.;
Barton, Geoffrey J.

Publication type:

Article

Predicting Positive p53 Cancer Rescue Regions Using Most Informative Positive (MIP) Active Learning.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000498

By:

Danziger, Samuel A.;
Baronio, Roberta;
Ho, Lydia;
Hall, Linda;
Salmon, Kirsty;
Hatfield, G. Wesley;
Kaiser, Peter;
Lathrop, RIchard H.

Publication type:

Article

Predicting the Evolution of Sex on Complex Fitness Landscapes.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000510

By:

Misevic, Dusan;
Kouyos, Roger D.;
Bonhoeffer, Sebastian

Publication type:

Article

Parallel Computational Subunits in Dentate Granule Cells Generate Multiple Place Fields.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000500

By:

Ujfalussy, Balézs;
Kiss, Tamás;
Érdi, Péter

Publication type:

Article

Evaluation of Objective Uncertainty in the Visual System.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000504

By:

Barthelmé, Simon;
Mamassian, Pascal

Publication type:

Article

Eradication of Chronic Myeloid Leukemia Stem Cells: A Novel Mathematical Model Predicts No Therapeutic Benefit of Adding G-CSF to Imatinib.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000503

By:

Foo, Jasmine;
Drummond, Mark W.;
Clarkson, Bayard;
Holyoake, Tessa;
Michor, Franziska

Publication type:

Article

Species Tree Inference by Minimizing Deep Coalescences.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000501

By:

Cuong Than;
Luay Nakhleh

Publication type:

Article

Influence of Sequence Changes and Environment on Intrinsically Disordered Proteins.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000497

By:

Mohan, Amrita;
Uversky, Vladimir N.;
Radivojac, Predrag

Publication type:

Article

A Structured Model of Video Reproduces Primary Visual Cortical Organisation.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000495

By:

Berkes, Pietro;
Turner, Richard E.;
Sahani, Maneesh

Publication type:

Article

The Role of Ongoing Dendritic Oscillations in Single-Neuron Dynamics.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000493

By:

Remme, Michiel W. H.;
Lengyel, Máté;
Gutkin, Boris S.

Publication type:

Article

Googling Food Webs: Can an Eigenvector Measure Species' Importance for Coextinctions?

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000494

By:

Allesina, Stefano;
Pascual, Mercedes

Publication type:

Article

Interrogating and Predicting Tolerated Sequence Diversity in Protein Folds: Application to E. elaterium Trypsin Inhibitor-II Cystine-Knot Miniprotein.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000499

By:

Lahti, Jennifer L.;
Silverman, Adam P.;
Cochran, Jennifer R.

Publication type:

Article

Global Motions of the Nuclear Pore Complex: Insights from Elastic Network Models.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000496

By:

Lezon, Timothy R.;
Sali, Andrej;
Bahar, Ivet

Publication type:

Article

Thermodynamic Selection of Steric Zipper Patterns in the Amyloid Cross- β Spine.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000492

By:

Jiyong Park;
Byungnam Kahng;
Wonmuk Hwang

Publication type:

Article

A Combinatorial Approach to Detect Coevolved Amino Acid Networks in Protein Families of Variable Divergence.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000488

By:

Baussand, Julie;
Carbone, Alessandra

Publication type:

Article

Intrinsic Structural Disorder Confers Cellular Viability on Oncogenic Fusion Proteins.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000552

By:

Hegyi, Hedi;
Buday, László;
Tompa, Peter

Publication type:

Article

Specific Entrainment of Mitral Cells during Gamma Oscillation in the Rat Olfactory Bulb.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000551

By:

David, François O.;
Hugues, Etienne;
Cenier, Tristan;
Fourcaud-Trocmé, Nicolas;
Buonviso, Nathalie

Publication type:

Article

Structure of Protein Interaction Networks and Their Implications on Drug Design.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000550

By:

Hase, Takeshi;
Tanaka, Hiroshi;
Suzuki, Yasuhiro;
Nakagawa, So;
Kitano, Hiroaki

Publication type:

Article

Tipping the Balance: Robustness of Tip Cell Selection, Migration and Fusion in Angiogenesis.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000549

By:

Bentley, Katie;
Mariggi, Giovanni;
Gerhardt, Holger;
Bates, Paul A.

Publication type:

Article

Gene Circuit Analysis of the Terminal Gap Gene huckebein.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000548

By:

Ashyraliyev, Maksat;
Siggens, Ken;
Janssens, Hilde;
Blom, Joke;
Akam, Michael;
Jaeger, Johannes

Publication type:

Article

Mechanical Strength of 17 134 Model Proteins and Cysteine Slipknots.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000547

By:

Sikora, Mateusz;
Sulkowska, Joanna I.;
Cieplak, Marek

Publication type:

Article

Investigation of the Interaction between the Large and Small Subunits of Potato ADP-Glucose Pyrophosphorylase.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000546

By:

Barıs, Ibrahim;
Tuncel, Aytug;
Ozber, Natali;
Keskin, Ozlem;
Kavakli, Ibrahim Halil

Publication type:

Article

Invariant Distribution of Promoter Activities in Escherichia coli.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000545

By:

Zaslaver, Alon;
Kaplan, Shai;
Bren, Anat;
Jinich, Adrian;
Mayo, Avi;
Dekel, Erez;
Alon, Uri;
Itzkovitz, Shalev

Publication type:

Article

Getting Started in Gene Expression Microarray Analysis.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000543

By:

Slonim, Donna K.;
Yanai, Itai

Publication type:

Article

Subbarrel Patterns in Somatosensory Cortical Barrels Can Emerge from Local Dynamic Instabilities.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.100053

By:

Ermentrout, Bard;
Simons, Daniel J.;
Land, Peter W.

Publication type:

Article

The Modular Organization of Protein Interactions in Escherichia coli.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000523

By:

Peregrín-Alvarez, José M.;
Xuejian Xiong;
Chong Su;
Parkinson, John

Publication type:

Article

Perturbation-Response Scanning Reveals Ligand Entry-Exit Mechanisms of Ferric Binding Protein.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000544

By:

Atilgan, Canan;
Atilgan, Ali Rana

Publication type:

Article

An Atlas of the Thioredoxin Fold Class Reveals the Complexity of Function-Enabling Adaptations.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000541

By:

Atkinson, Holly J.;
Babbitt, Patricia C.

Publication type:

Article

Multilevel Selection in Models of Prebiotic Evolution II: A Direct Comparison of Compartmentalization and Spatial Self-Organization.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000542

By:

Takeuchi, Nobuto;
Hogeweg, Paulien

Publication type:

Article

A Model of Cardiovascular Disease Giving a Plausible Mechanism for the Effect of Fractionated Low-Dose Ionizing Radiation Exposure.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000539

By:

Little, Mark P.;
Gola, Anna;
Tzoulaki, Ioanna

Publication type:

Article

Grasping Objects with Environmentally Induced Position Uncertainty.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000538

By:

Christopoulos, Vassilios N.;
Schrater, Paul R.

Publication type:

Article

'Glocal' Robustness Analysis and Model Discrimination for Circadian Oscillators.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000534

By:

Hafner, Marc;
Koeppl, Heinz;
Hasler, Martin;
Wagner, Andreas

Publication type:

Article

Steps in the Bacterial Flagellar Motor.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000540

By:

Mora, Thierry;
Yu, Howard;
Sowa, Yoshiyuki;
Wingreen, Ned S.

Publication type:

Article

Integration of Evolutionary Features for the Identification of Functionally Important Residues in Major Facilitator Superfamily Transporters.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000522

By:

Jouhyun Jeon;
Jae-Seong Yang;
Sanguk Kim

Publication type:

Article