Works matching IS 1553734X AND DT 2009 AND VI 5 AND IP 12

Results: 47

Emergent Patterns of Social Affiliation in Primates, a Model.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000630

By:

Puga-Gonzalez, Ivan;
Hildenbrandt, Hanno;
Hemelrijk, Charlotte K.

Publication type:

Article

Bayesian Integration and Non-Linear Feedback Control in a Full-Body Motor Task.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000629

By:

Stevenson, Ian H.;
Fernandes, Hugo L.;
Vilares, Iris;
Wei, Kunlin;
Körding, Konrad P.

Publication type:

Article

Order and Stochastic Dynamics in Drosophila Planar Cell Polarity.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000628

By:

Burak, Yoram;
Shraiman, Boris I.

Publication type:

Article

Tradeoff Between Stability and Multispecificity in the Design of Promiscuous Proteins.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000627

By:

Fromer, Menachem;
Shifman, Julia M.

Publication type:

Article

Decomposition of Gene Expression State Space Trajectories.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000626

By:

Mar, Jessica C.;
John Quackenbush

Publication type:

Article

Hyperbolic Planforms in Relation to Visual Edges and Textures Perception.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000625

By:

Chossat, Pascal;
Faugeras, Olivier

Publication type:

Article

Rational Mutational Analysis of a Multidrug MFS Transporter CaMdr1p of Candida albicans by Employing a Membrane Environment Based Computational Approach.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000624

By:

Kapoor, Khyati;
Rehan, Mohd;
Kaushiki, Ajeeta;
Pasrija, Ritu;
Lynn, Andrew M.;
Prasad, Rajendra

Publication type:

Article

A Stochastic Model for Microtubule Motors Describes the In Vivo Cytoplasmic Transport of Human Adenovirus.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000623

By:

Gazzola, Mattia;
Burckhardt, Christoph J.;
Bayati, Basil;
Engelke, Martin;
Greber, Urs F.;
Koumoutsakos, Petros

Publication type:

Article

The Presence of VEGF Receptors on the Luminal Surface of Endothelial Cells Affects VEGF Distribution and VEGF Signaling.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000622

By:

Stefanini, Marianne O.;
Wu, Florence T. H.;
Gabhann, Feilim Mac;
Popel, Aleksander S.

Publication type:

Article

Design Principles for Ligand-Sensing, Conformation-Switching Ribozymes.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000620

By:

Xi Chen;
Ellington, Andrew D.

Publication type:

Article

Bistability of Mitochondrial Respiration Underlies Paradoxical Reactive Oxygen Species Generation Induced by Anoxia.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000619

By:

Selivanov, Vitaly A.;
Votyakova, Tatyana V.;
Zeak, Jennifer A.;
Trucco, Massimo;
Roca, Josep;
Cascante, Marta

Publication type:

Article

Burst-Time-Dependent Plasticity Robustly Guides ON/OFF Segregation in the Lateral Geniculate Nucleus.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000618

By:

Gjorgjieva, Julijana;
Toyoizumi, Taro;
Eglen, Stephen J.

Publication type:

Article

Adaptive Gain Modulation in V1 Explains Contextual Modifications during Bisection Learning.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000617

By:

Schäfer, Roland;
Vasilaki, Eleni;
Senn, Walter

Publication type:

Article

Meta-analysis of Inter-species Liver Co-expression Networks Elucidates Traits Associated with Common Human Diseases.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000616

By:

Kai Wang;
Narayanan, Manikandan;
Hua Zhong;
Tompa, Martin;
Schadt, Eric E.;
Jun Zhu

Publication type:

Article

Calculating Evolutionary Dynamics in Structured Populations.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000615

By:

Nathanson, Charles G.;
Tarnita, Corina E.;
Nowak, Martin A.

Publication type:

Article

Model of Transcriptional Activation by MarA in Escherichia coli.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000614

By:

Wall, Michael E.;
Markowitz, David A.;
Rosner, Judah L.;
Martin, Robert G.

Publication type:

Article

Evolutionary Plasticity and Innovations in Complex Metabolic Reaction Networks.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000613

By:

Matias Rodrigues, João F.;
Wagner, Andreas

Publication type:

Article

Nano-motion Dynamics are Determined by Surface-Tethered Selectin Mechanokinetics and Bond Formation.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000612

By:

Schmidt, Brian J.;
Papin, Jason A.;
Lawrence, Michael B.

Publication type:

Article

Distributed Dynamical Computation in Neural Circuits with Propagating Coherent Activity Patterns.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000611

By:

Gong, Pulin;
van Leeuwen, Cees

Publication type:

Article

Alu and B1 Repeats Have Been Selectively Retained in the Upstream and Intronic Regions of Genes of Specific Functional Classes.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000610

By:

Tsirigos, Aristotelis;
Rigoutsos, Isidore

Publication type:

Article

Power-Law Scaling in the Brain Surface Electric Potential.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000609

By:

Miller, Kai J.;
Sorensen, Larry B.;
Ojemann, Jeffrey G.;
den Nijs, Marcel

Publication type:

Article

Predicting Functional Alternative Splicing by Measuring RNA Selection Pressure from Multigenome Alignments.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000608

By:

Hongchao Lu;
Lan Lin;
Seiko Sato;
Yi Xing;
Lee, Christopher J.

Publication type:

Article

Dissecting Early Differentially Expressed Genes in a Mixture of Differentiating Embryonic Stem Cells.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000607

By:

Feng Hong;
Fang Fang;
Xuming He;
Xiaoyi Cao;
Chipperfield, Hiram;
Dan Xie;
Wong, Wing H.;
Ng, Huck H.;
Sheng Zhong

Publication type:

Article

Transcriptome and Proteome Exploration to Model Translation Efficiency and Protein Stability in Lactococcus lactis.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000606

By:

Dressaire, Clémentine;
Gitton, Christophe;
Loubière, Pascal;
Monnet, Véronique;
Queinnec, Isabelle;
Cocaign-Bousquet, Muriel

Publication type:

Article

Annotation Error in Public Databases: Misannotation of Molecular Function in Enzyme Superfamilies.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000605

By:

Schnoes, Alexandra M.;
Brown, Shoshana D.;
Dodevski, Igor;
Babbitt, Patricia C.

Publication type:

Article

Integrin Clustering Is Driven by Mechanical Resistance from the Glycocalyx and the Substrate.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000604

By:

Paszek, Matthew J.;
Boettiger, David;
Weaver, Valerie M.;
Hammer, Daniel A.

Publication type:

Article

Introduction to the Quantitative Analysis of Two-Dimensional Fluorescence Microscopy Images for Cell- Based Screening.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000603

By:

Ljosa, Vebjorn;
Carpenter, Anne E.

Publication type:

Article

Cortical Gamma Rhythms Modulate NMDAR-Mediated Spike Timing Dependent Plasticity in a Biophysical Model.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000602

By:

Lee, Shane;
Sen, Kamal;
Kopell, Nancy

Publication type:

Article

Human Cancer Protein-Protein Interaction Network: A Structural Perspective.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000601

By:

Kar, Gozde;
Gursoy, Attila;
Keskin, Ozlem

Publication type:

Article

A Multi-Component Model of the Developing Retinocollicular Pathway Incorporating Axonal and Synaptic Growth.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000600

By:

Godfrey, Keith B.;
Eglen, Stephen J.;
Swindale, Nicholas V.

Publication type:

Article

What Do Transitive Inference and Class Inclusion Have in Common? Categorical (Co)Products and Cognitive Development.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000599

By:

Phillips, Steven;
Wilson, William H.;
Halford, Graeme S.

Publication type:

Article

An Abundance of Ubiquitously Expressed Genes Revealed by Tissue Transcriptome Sequence Data.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000598

By:

Ramsköld, Daniel;
Wang, Eric T.;
Burge, Christopher B.;
Sandberg, Rickard

Publication type:

Article

Biomedical Text Mining and Its Applications.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000597

By:

Rodriguez-Esteban, Raul

Publication type:

Article

Population Structure Induces a Symmetry Breaking Favoring the Emergence of Cooperation.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000596

By:

Pacheco, Jorge M.;
Pinheiro, Flávio L.;
Santos, Francisco C.

Publication type:

Article

ON/OFF and Beyond - A Boolean Model of Apoptosis.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000595

By:

Schlatter, Rebekka;
Schmich, Kathrin;
Vizcarra, Ima Avalos;
Scheurich, Peter;
Sauter, Thomas;
Borner, Christoph;
Ederer, Michael;
Merfort, Irmgard;
Sawodny, Oliver

Publication type:

Article

Challenges Predicting Ligand-Receptor Interactions of Promiscuous Proteins: The Nuclear Receptor PXR.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000594

By:

Ekins, Sean;
Kortagere, Sandhya;
Iyer, Manisha;
Reschly, Erica J.;
Lill, Markus A.;
Redinbo, Matthew R.;
Krasowski, Matthew D.

Publication type:

Article

The GAAS Metagenomic Tool and Its Estimations of Viral and Microbial Average Genome Size in Four Major Biomes.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000593

By:

Angly, Florent E.;
Willner, Dana;
Prieto-Davó, Alejandra;
Edwards, Robert A.;
Schmieder, Robert;
Vega-Thurber, Rebecca;
Antonopoulos, Dionysios A.;
Barott, Katie;
Cottrell, Matthew T.;
Desnues, Christelle;
Dinsdale, Elizabeth A.;
Furlan, Mike;
Haynes, Matthew;
Henn, Matthew R.;
Yongfei Hu;
Kirchman, David L.;
McDole, Tracey;
McPherson, John D.;
Meyer, Folker;
Miller, R. Michael

Publication type:

Article

Trade-off between Positive and Negative Design of Protein Stability: From Lattice Models to Real Proteins.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000592

By:

Noivirt-Brik, Orly;
Horovitz, Amnon;
Unger, Ron

Publication type:

Article

Identifying Drug Effects via Pathway Alterations using an Integer Linear Programming Optimization Formulation on Phosphoproteomic Data.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000591

By:

Mitsos, Alexander;
Melas, Ioannis N.;
Siminelakis, Paraskeuas;
Chairakaki, Aikaterini D.;
Saez-Rodriguez, Julio;
Alexopoulos, Leonidas G.

Publication type:

Article

Inferring Binding Energies from Selected Binding Sites.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000590

By:

Yue Zhao;
Granas, David;
Stormo, Gary D.

Publication type:

Article

A Quick Guide for Developing Effective Bioinformatics Programming Skills.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000589

By:

Dudley, Joel T.;
Butte, Atul J.

Publication type:

Article

A Model Analysis of Arterial Oxygen Desaturation during Apnea in Preterm Infants.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000588

By:

Sands, Scott A.;
Edwards, Bradley A.;
Kelly, Vanessa J.;
Davidson, Malcolm R.;
Wilkinson, Malcolm H.;
Berger, Philip J.

Publication type:

Article

Effective Reduced Diffusion-Models: A Data Driven Approach to the Analysis of Neuronal Dynamics.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000587

By:

Deco, Gustavo;
Martí, Daniel;
Ledberg, Anders;
Reig, Ramon;
Sanchez Vives, Maria V.

Publication type:

Article

Spike-Based Reinforcement Learning in Continuous State and Action Space: When Policy Gradient Methods Fail.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000586

By:

Vasilaki, Eleni;
Frémaux, Nicolas;
Urbanczik, Robert;
Senn, Walter;
Gerstner, Wulfram

Publication type:

Article

Predicting Protein Ligand Binding Sites by Combining Evolutionary Sequence Conservation and 3D Structure.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000585

By:

Capra, John A.;
Laskowski, Roman A.;
Thornton, Janet M.;
Singh, Mona;
Funkhouser, Thomas A.

Publication type:

Article

Defining an Essence of Structure Determining Residue Contacts in Proteins.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000584

By:

Sathyapriya, R.;
Duarte, Jose M.;
Stehr, Henning;
Filippis, Ioannis;
Lappe, Michael

Publication type:

Article

Oxidized Calmodulin Kinase II Regulates Conduction Following Myocardial Infarction: A Computational Analysis.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 12, p. 1, doi. 10.1371/journal.pcbi.1000583

By:

Christensen, Matthew D.;
Dun, Wen;
Boyden, Penelope A.;
Anderson, Mark E.;
Mohler, Peter J.;
Hund, Thomas J.

Publication type:

Article