Works matching IS 1553734X AND DT 2009 AND VI 5 AND IP 1

Results: 26

Precise Regulation of Gene Expression Dynamics Favors Complex Promoter Architectures.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 1, p. 1, doi. 10.1371/journal.pcbi.1000279

By:

Müller, Dirk;
Stelling, Jörg

Publication type:

Article

Prediction of Protein-Protein Interaction Sites in Sequences and 3D Structures by Random Forests.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 1, p. 1, doi. 10.1371/journal.pcbi.1000278

By:

Šikić, Mile;
Tomić, Sanja;
Vlahoviček, Kristian

Publication type:

Article

Poisson-Nernst-Planck Models of Nonequilibrium Ion Electrodiffusion through a Protegrin Transmembrane Pore.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 1, p. 1, doi. 10.1371/journal.pcbi.1000277

By:

Bolintineanu, Dan S.;
Sayyed-Ahmad, Abdallah;
Davis, H. Ted;
Kaznessis, Yiannis N.

Publication type:

Article

Cohesive versus Flexible Evolution of Functional Modules in Eukaryotes.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 1, p. 1, doi. 10.1371/journal.pcbi.1000276

By:

Fokkens, Like;
Snel, Berend

Publication type:

Article

A Review of 2008 for PLoS Computational Biology.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 1, p. 1, doi. 10.1371/journal.pcbi.1000275

By:

Browne, Evie;
Dickin, Rosemary;
Bourne, Philip E.

Publication type:

Article

A Factor Graph Nested Effects Model To Identify Networks from Genetic Perturbations.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 1, p. 1, doi. 10.1371/journal.pcbi.1000274

By:

Vaske, Charles J.;
House, Carrie;
Luu, Truong;
Frank, Bryan;
Chen-Hsiang Yeang;
Lee, Norman H.;
Stuart, Joshua M.

Publication type:

Article

Model-Based Therapeutic Correction of Hypothalamic- Pituitary-Adrenal Axis Dysfunction.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 1, p. 1, doi. 10.1371/journal.pcbi.1000273

By:

Ben-Zvi, Amos;
Vernon, Suzanne D.;
Broderick, Gordon

Publication type:

Article

Astrocytic Mechanisms Explaining Neural-Activity- Induced Shrinkage of Extraneuronal Space.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 1, p. 1, doi. 10.1371/journal.pcbi.1000272

By:

Østby, Ivar;
Øyehaug, Leiv;
Einevoll, Gaute T.;
Nagelhus, Erlend A.;
Plahte, Erik;
Zeuthen, Thomas;
Lloyd, Catherine M.;
Ottersen, Ole P.;
Omholt, Stig W.

Publication type:

Article

Efficient Network Reconstruction from Dynamical Cascades Identifies Small-World Topology of Neuronal Avalanches.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 1, p. 1, doi. 10.1371/journal.pcbi.1000271

By:

Pajevic, Sinisa;
Plenz, Dietmar

Publication type:

Article

Coordinated Concentration Changes of Transcripts and Metabolites in Saccharomyces cerevisiae.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 1, p. 1, doi. 10.1371/journal.pcbi.1000270

By:

Bradley, Patrick H.;
Brauer, Matthew J.;
Rabinowitz, Joshua D.;
Troyanskaya, Olga G.

Publication type:

Article

A Primer on Regression Methods for Decoding cis- Regulatory Logic.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 1, p. 1, doi. 10.1371/journal.pcbi.1000269

By:

Das, Debopriya;
Pellegrini, Matteo;
Gray, Joe W.

Publication type:

Article

Computational Modeling of the Hematopoietic Erythroid-Myeloid Switch Reveals Insights into Cooperativity, Priming, and Irreversibility.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 1, p. 1, doi. 10.1371/journal.pcbi.1000268

By:

Chickarmane, Vijay;
Enver, Tariq;
Peterson, Carsten

Publication type:

Article

Joint Evolutionary Trees: A Large-Scale Method To Predict Protein Interfaces Based on Sequence Sampling.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 1, p. 1, doi. 10.1371/journal.pcbi.1000267

By:

Engelen, Stefan;
Trojan, Ladislas A.;
Sacquin-Mora, Sophie;
Lavery, Richard;
Carbone, Alessandra

Publication type:

Article

Partial Order Optimum Likelihood (POOL): Maximum Likelihood Prediction of Protein Active Site Residues Using 3D Structure and Sequence Properties.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 1, p. 1, doi. 10.1371/journal.pcbi.1000266

By:

Wenxu Tong;
Ying Wei;
Murga, Leonel F.;
Ondrechen, Mary Jo;
Williams, Ronald J.

Publication type:

Article

Action Potential Initiation in the Hodgkin-Huxley Model.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 1, p. 1, doi. 10.1371/journal.pcbi.1000265

By:

Colwell, Lucy J.;
Brenner, Michael P.

Publication type:

Article

Developmental Robustness by Obligate Interaction of Class B Floral Homeotic Genes and Proteins.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 1, p. 1, doi. 10.1371/journal.pcbi.1000264

By:

Lenser, Thorsten;
Theißen, Günter;
Dittrich, Peter

Publication type:

Article

Microblogging the ISMB: A New Approach to Conference Reporting.

Published in:

2009

By:

Saunders, Neil;
Beltrão, Pedro;
Jensen, Lars;
Jurczak, Daniel;
Krause, Roland;
Kuhn, Michael;
Wu, Shirley

Publication type:

Proceeding

Phylogenetic and Functional Assessment of Orthologs Inference Projects and Methods.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 1, p. 1, doi. 10.1371/journal.pcbi.1000262

By:

Altenhoff, Adrian M.;
Dessimoz, Christophe

Publication type:

Article

An Analysis of Enzyme Kinetics Data for Mitochondrial DNA Strand Termination by Nucleoside Reverse Transcription Inhibitors.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 1, p. 1, doi. 10.1371/journal.pcbi.1000261

By:

Wendelsdorf, Katherine V.;
Zhuo Song;
Yang Cao;
Samuels, David C.

Publication type:

Article

Deterministic Mechanical Model of T-Killer Cell Polarization Reproduces the Wandering of Aim between Simultaneously Engaged Targets.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 1, p. 1, doi. 10.1371/journal.pcbi.1000260

By:

Kim, MunJu;
Maly, Ivan V.

Publication type:

Article

State Based Model of Long-Term Potentiation and Synaptic Tagging and Capture.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 1, p. 1, doi. 10.1371/journal.pcbi.1000259

By:

Barrett, Adam B.;
Billings, Guy O.;
Morris, Richard G. M.;
van Rossum, Mark C. W.

Publication type:

Article

Evolutionary Sequence Modeling for Discovery of Peptide Hormones.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 1, p. 1, doi. 10.1371/journal.pcbi.1000258

By:

Sonmez, Kemal;
Zaveri, Naunihal T.;
Kerman, Ilan A.;
Burke, Sharon;
Neal, Charles R.;
Xinmin Xie;
Watson, Stanley J.;
Toll, Lawrence

Publication type:

Article

Predicting Cellular Growth from Gene Expression Signatures.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 1, p. 1, doi. 10.1371/journal.pcbi.1000257

By:

Airoldi, Edoardo M.;
Huttenhower, Curtis;
Gresham, David;
Lu, Charles;
Caudy, Amy A.;
Dunham, Maitreya J.;
Broach, James R.;
Botstein, David;
Troyanskaya, Olga G.

Publication type:

Article

Shape, Size, and Robustness: Feasible Regions in the Parameter Space of Biochemical Networks.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 1, p. 1, doi. 10.1371/journal.pcbi.1000256

By:

Dayarian, Adel;
Chaves, Madalena;
Sontag, Eduardo D.;
Sengupta, Anirvan M.

Publication type:

Article

Polyamine Sharing between Tubulin Dimers Favours Microtubule Nucleation and Elongation via Facilitated Diffusion.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 1, p. 1, doi. 10.1371/journal.pcbi.1000255

By:

Mechulam, Alain;
Chernov, Konstantin G.;
Mucher, Elodie;
Hamon, Loic;
Curmi, Patrick A.;
Pastré, David

Publication type:

Article

Questioning the Ubiquity of Neofunctionalization.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 1, p. 1, doi. 10.1371/journal.pcbi.1000252

By:

Gibson, Todd A.;
Goldberg, Debra S.

Publication type:

Article