Works in PLoS Genetics, 2022, Vol 18, Issue 1

Results: 43

Meta-imputation of transcriptome from genotypes across multiple datasets by leveraging publicly available summary-level data.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1009571

By:

Liu, Andrew E.;
Kang, Hyun Min

Publication type:

Article

Redundant neural circuits regulate olfactory integration.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1010029

By:

Yang, Wenxing;
Wu, Taihong;
Tu, Shasha;
Qin, Yuang;
Shen, Chengchen;
Li, Jiangyun;
Choi, Myung-Kyu;
Duan, Fengyun;
Zhang, Yun

Publication type:

Article

The Clock:Cycle complex is a major transcriptional regulator of Drosophila photoreceptors that protects the eye from retinal degeneration and oxidative stress.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1010021

By:

Jauregui-Lozano, Juan;
Hall, Hana;
Stanhope, Sarah C.;
Bakhle, Kimaya;
Marlin, Makayla M.;
Weake, Vikki M.

Publication type:

Article

Neuroplastin genetically interacts with Cadherin 23 and the encoded isoform Np55 is sufficient for cochlear hair cell function and hearing.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1009937

By:

Newton, Sherylanne;
Kong, Fanbo;
Carlton, Adam J.;
Aguilar, Carlos;
Parker, Andrew;
Codner, Gemma F.;
Teboul, Lydia;
Wells, Sara;
Brown, Steve D. M.;
Marcotti, Walter;
Bowl, Michael R.

Publication type:

Article

The Ets protein Pointed P1 represses Asense expression in type II neuroblasts by activating Tailless.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1009928

By:

Chen, Rui;
Deng, Xiaobing;
Zhu, Sijun

Publication type:

Article

Transcription factor regulation of eQTL activity across individuals and tissues.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1009719

By:

Flynn, Elise D.;
Tsu, Athena L.;
Kasela, Silva;
Kim-Hellmuth, Sarah;
Aguet, Francois;
Ardlie, Kristin G.;
Bussemaker, Harmen J.;
Mohammadi, Pejman;
Lappalainen, Tuuli

Publication type:

Article

Super interactive promoters provide insight into cell type-specific regulatory networks in blood lineage cell types.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1009984

By:

Wen, Jia;
Lagler, Taylor M.;
Sun, Quan;
Yang, Yuchen;
Chen, Jiawen;
Harigaya, Yuriko;
Sankaran, Vijay G.;
Hu, Ming;
Reiner, Alexander P.;
Raffield, Laura M.;
Li, Yun

Publication type:

Article

Kinesin-3 mediated axonal delivery of presynaptic neurexin stabilizes dendritic spines and postsynaptic components.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1010016

By:

Oliver, Devyn;
Ramachandran, Shankar;
Philbrook, Alison;
Lambert, Christopher M.;
Nguyen, Ken C. Q.;
Hall, David H.;
Francis, Michael

Publication type:

Article

The C. elegans TspanC8 tetraspanin TSP-14 exhibits isoform-specific localization and function.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1009936

By:

Liu, Zhiyu;
Shi, Herong;
Liu, Jun

Publication type:

Article

Correction: The genetic consequences of dog breed formation—Accumulation of deleterious genetic variation and fixation of mutations associated with myxomatous mitral valve disease in cavalier King Charles spaniels.

Published in:

2022

By:

Axelsson, Erik;
Ljungvall, Ingrid;
Bhoumik, Priyasma;
Conn, Laura Bas;
Muren, Eva;
Ohlsson, Åsa;
Olsen, Lisbeth Høier;
Engdahl, Karolina;
Hagman, Ragnvi;
Hanson, Jeanette;
Kryvokhyzha, Dmytro;
Pettersson, Mats;
Grenet, Olivier;
Moggs, Jonathan;
Rio-Espinola, Alberto Del;
Epe, Christian;
Taillon, Bruce;
Tawari, Nilesh;
Mane, Shrinivas;
Hawkins, Troy

Publication type:

Correction Notice

Noise-augmented directional clustering of genetic association data identifies distinct mechanisms underlying obesity.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1009975

By:

Grant, Andrew J.;
Gill, Dipender;
Kirk, Paul D. W.;
Burgess, Stephen

Publication type:

Article

Predictability and parallelism in the contemporary evolution of hybrid genomes.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1009914

By:

Langdon, Quinn K.;
Powell, Daniel L.;
Kim, Bernard;
Banerjee, Shreya M.;
Payne, Cheyenne;
Dodge, Tristram O.;
Moran, Ben;
Fascinetto-Zago, Paola;
Schumer, Molly

Publication type:

Article

Proline-specific aminopeptidase P prevents replication-associated genome instability.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1010025

By:

Silva, Nicola;
Castellano-Pozo, Maikel;
Matsuzaki, Kenichiro;
Barroso, Consuelo;
Roman-Trufero, Monica;
Craig, Hannah;
Brooks, Darren R.;
Isaac, R. Elwyn;
Boulton, Simon J.;
Martinez-Perez, Enrique

Publication type:

Article

The estimates of effective population size based on linkage disequilibrium are virtually unaffected by natural selection.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1009764

By:

Novo, Irene;
Santiago, Enrique;
Caballero, Armando

Publication type:

Article

The nuclear receptor Hr46/Hr3 is required in the blood brain barrier of mature males for courtship.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1009519

By:

Lama, Chamala;
Love, Cameron R.;
Le, Hoa Nhu;
Waqar, Marium;
Reeve, Joseph L.;
Lama, Jyoti;
Dauwalder, Brigitte

Publication type:

Article

Demography and selection analysis of the incipient adaptive radiation of a Hawaiian woody species.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1009987

By:

Izuno, Ayako;
Onoda, Yusuke;
Amada, Gaku;
Kobayashi, Keito;
Mukai, Mana;
Isagi, Yuji;
Shimizu, Kentaro K.

Publication type:

Article

Nicotinic acetylcholine receptor modulator insecticides act on diverse receptor subtypes with distinct subunit compositions.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1009920

By:

Lu, Wanjun;
Liu, Zhihan;
Fan, Xinyu;
Zhang, Xinzhong;
Qiao, Xiaomu;
Huang, Jia

Publication type:

Article

Do sex hormones confound or mediate the effect of chronotype on breast and prostate cancer? A Mendelian randomization study.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1009887

By:

Hayes, Bryony L.;
Robinson, Timothy;
Kar, Siddhartha;
Ruth, Katherine S.;
Tsilidis, Konstantinos K.;
Frayling, Timothy;
Murray, Anna;
Martin, Richard M.;
Lawlor, Deborah A.;
Richmond, Rebecca C.

Publication type:

Article

Detection and characterization of genome-wide mutations in M1 vegetative cells of gamma-irradiated Arabidopsis.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1009979

By:

Kitamura, Satoshi;
Satoh, Katsuya;
Oono, Yutaka

Publication type:

Article

Regulation of gliotoxin biosynthesis and protection in Aspergillus species.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1009965

By:

de Castro, Patrícia Alves;
Colabardini, Ana Cristina;
Moraes, Maísa;
Horta, Maria Augusta Crivelente;
Knowles, Sonja L.;
Raja, Huzefa A.;
Oberlies, Nicholas H.;
Koyama, Yasuji;
Ogawa, Masahiro;
Gomi, Katsuya;
Steenwyk, Jacob L.;
Rokas, Antonis;
Gonçales, Relber A.;
Duarte-Oliveira, Cláudio;
Carvalho, Agostinho;
Ries, Laure N. A.;
Goldman, Gustavo H.

Publication type:

Article

Genome-wide association study identifies genetic risk loci for adiposity in a Taiwanese population.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1009952

By:

Wong, Henry Sung-Ching;
Tsai, Szu-Yi;
Chu, Hou-Wei;
Lin, Min-Rou;
Lin, Gan-Hong;
Tai, Yu-Ting;
Shen, Chen-Yang;
Chang, Wei-Chiao

Publication type:

Article

Single-cell sequencing reveals lineage-specific dynamic genetic regulation of gene expression during human cardiomyocyte differentiation.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1009666

By:

Elorbany, Reem;
Popp, Joshua M.;
Rhodes, Katherine;
Strober, Benjamin J.;
Barr, Kenneth;
Qi, Guanghao;
Gilad, Yoav;
Battle, Alexis

Publication type:

Article

Systematic mapping of rRNA 2'-O methylation during frog development and involvement of the methyltransferase Fibrillarin in eye and craniofacial development in Xenopus laevis.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1010012

By:

Delhermite, Jonathan;
Tafforeau, Lionel;
Sharma, Sunny;
Marchand, Virginie;
Wacheul, Ludivine;
Lattuca, Ruben;
Desiderio, Simon;
Motorin, Yuri;
Bellefroid, Eric;
Lafontaine, Denis L. J.

Publication type:

Article

Genome-wide chromatin contacts of super-enhancer-associated lncRNA identify LINC01013 as a regulator of fibrosis in the aortic valve.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1010010

By:

Chignon, Arnaud;
Argaud, Déborah;
Boulanger, Marie-Chloé;
Mkannez, Ghada;
Bon-Baret, Valentin;
Li, Zhonglin;
Thériault, Sébastien;
Bossé, Yohan;
Mathieu, Patrick

Publication type:

Article

Comprehensive patient-level classification and quantification of driver events in TCGA PanCanAtlas cohorts.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1009996

By:

Vyatkin, Alexey D.;
Otnyukov, Danila V.;
Leonov, Sergey V.;
Belikov, Aleksey V.

Publication type:

Article

Massively parallel reporter assays discover de novo exonic splicing mutants in paralogs of Autism genes.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1009884

By:

Rhine, Christy L.;
Neil, Christopher;
Wang, Jing;
Maguire, Samantha;
Buerer, Luke;
Salomon, Mitchell;
Meremikwu, Ijeoma C.;
Kim, Juliana;
Strande, Natasha T.;
Fairbrother, William G.

Publication type:

Article

Shp2 in uterine stromal cells critically regulates on time embryo implantation and stromal decidualization by multiple pathways during early pregnancy.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1010018

By:

Cheng, Jianghong;
Liang, Jia;
Li, Yingzhe;
Gao, Xia;
Ji, Mengjun;
Liu, Mengying;
Tian, Yingpu;
Feng, Gensheng;
Deng, Wenbo;
Wang, Haibin;
Kong, Shuangbo;
Lu, Zhongxian

Publication type:

Article

Activation of the ubiquitin-proteasome system contributes to oculopharyngeal muscular dystrophy through muscle atrophy.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1010015

By:

Ribot, Cécile;
Soler, Cédric;
Chartier, Aymeric;
Al Hayek, Sandy;
Naït-Saïdi, Rima;
Barbezier, Nicolas;
Coux, Olivier;
Simonelig, Martine

Publication type:

Article

Paternally expressed gene 3 (Pw1/Peg3) promotes sexual dimorphism in metabolism and behavior.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1010003

By:

Tanaka, Karo;
Besson, Vanessa;
Rivagorda, Manon;
Oury, Franck;
Marazzi, Giovanna;
Sassoon, David A.

Publication type:

Article

Repurposing of the enhancer-promoter communication underlies the compensation of Mesp2 by Mesp1.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1010000

By:

Okada, Hajime;
Saga, Yumiko

Publication type:

Article

WAPO-A1 is the causal gene of the 7AL QTL for spikelet number per spike in wheat.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1009747

By:

Kuzay, Saarah;
Lin, Huiqiong;
Li, Chengxia;
Chen, Shisheng;
Woods, Daniel P.;
Zhang, Junli;
Lan, Tianyu;
von Korff, Maria;
Dubcovsky, Jorge

Publication type:

Article

Analysis of HubP-dependent cell pole protein targeting in Vibrio cholerae uncovers novel motility regulators.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1009991

By:

Altinoglu, Ipek;
Abriat, Guillaume;
Carreaux, Alexis;
Torres-Sánchez, Lucía;
Poidevin, Mickaël;
Krasteva, Petya Violinova;
Yamaichi, Yoshiharu

Publication type:

Article

Chromatin profiling reveals heterogeneity in clinical isolates of the human pathogen Aspergillus fumigatus.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1010001

By:

Colabardini, Ana Cristina;
Wang, Fang;
Miao, Zhengqiang;
Pardeshi, Lakhansing;
Valero, Clara;
de Castro, Patrícia Alves;
Akiyama, Daniel Yuri;
Tan, Kaeling;
Nora, Luisa Czamanski;
Silva-Rocha, Rafael;
Marcet-Houben, Marina;
Gabaldón, Toni;
Fill, Taicia;
Wong, Koon Ho;
Goldman, Gustavo H.

Publication type:

Article

Bacterial recognition by PGRP-SA and downstream signalling by Toll/DIF sustain commensal gut bacteria in Drosophila.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1009992

By:

Bahuguna, Shivohum;
Atilano, Magda;
Glittenberg, Marcus;
Lee, Dohun;
Arora, Srishti;
Wang, Lihui;
Zhou, Jun;
Redhai, Siamak;
Boutros, Michael;
Ligoxygakis, Petros

Publication type:

Article

Population-level genome-wide STR discovery and validation for population structure and genetic diversity assessment of Plasmodium species.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1009604

By:

Han, Jiru;
Munro, Jacob E.;
Kocoski, Anthony;
Barry, Alyssa E.;
Bahlo, Melanie

Publication type:

Article

Identification of the potential active site of the septal peptidoglycan polymerase FtsW.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1009993

By:

Li, Ying;
Boes, Adrien;
Cui, Yuanyuan;
Zhao, Shan;
Liao, Qingzhen;
Gong, Han;
Breukink, Eefjan;
Lutkenhaus, Joe;
Terrak, Mohammed;
Du, Shishen

Publication type:

Article

Differential gene expression analysis identified determinants of cell fate plasticity during radiation-induced regeneration in Drosophila.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1009989

By:

Ledru, Michelle;
Clark, Caitlin A.;
Brown, Jeremy;
Verghese, Shilpi;
Ferrara, Sarah;
Goodspeed, Andrew;
Su, Tin Tin

Publication type:

Article

Preformation and epigenesis converge to specify primordial germ cell fate in the early Drosophila embryo.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1010002

By:

Colonnetta, Megan M.;
Goyal, Yogesh;
Johnson, Heath E.;
Syal, Sapna;
Schedl, Paul;
Deshpande, Girish

Publication type:

Article

The impact of SBF2 on taxane-induced peripheral neuropathy.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1009968

By:

Cunningham, Geneva M.;
Shen, Fei;
Wu, Xi;
Cantor, Erica L.;
Gardner, Laura;
Philips, Santosh;
Jiang, Guanglong;
Bales, Casey L.;
Tan, Zhiyong;
Liu, Yunlong;
Wan, Jun;
Fehrenbacher, Jill C.;
Schneider, Bryan P.

Publication type:

Article

Gene by Environment Interactions reveal new regulatory aspects of signaling network plasticity.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1009988

By:

Vandermeulen, Matthew D.;
Cullen, Paul J.

Publication type:

Article

The Candida albicans Cdk8-dependent phosphoproteome reveals repression of hyphal growth through a Flo8-dependent pathway.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1009622

By:

Hollomon, Jeffrey M.;
Liu, Zhongle;
Rusin, Scott F.;
Jenkins, Nicole P.;
Smith, Allia K.;
Koeppen, Katja;
Kettenbach, Arminja N.;
Myers, Lawrence C.;
Hogan, Deborah A.

Publication type:

Article

Three classes of epigenomic regulators converge to hyperactivate the essential maternal gene deadhead within a heterochromatin mini-domain.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1009615

By:

Torres-Campana, Daniela;
Horard, Béatrice;
Denaud, Sandrine;
Benoit, Gérard;
Loppin, Benjamin;
Orsi, Guillermo A.

Publication type:

Article

The SWI/SNF chromatin remodeling assemblies BAF and PBAF differentially regulate cell cycle exit and cellular invasion in vivo.

Published in:

PLoS Genetics, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pgen.1009981

By:

Smith, Jayson J.;
Xiao, Yutong;
Parsan, Nithin;
Medwig-Kinney, Taylor N.;
Martinez, Michael A. Q.;
Moore, Frances E. Q.;
Palmisano, Nicholas J.;
Kohrman, Abraham Q.;
Chandhok Delos Reyes, Mana;
Adikes, Rebecca C.;
Liu, Simeiyun;
Bracht, Sydney A.;
Zhang, Wan;
Wen, Kailong;
Kratsios, Paschalis;
Matus, David Q.

Publication type:

Article