Works in PLoS Computational Biology, 2010, Vol 6, Issue 9

Results: 40

HIV Promoter Integration Site Primarily Modulates Transcriptional Burst Size Rather Than Frequency.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000952

By:

Skupsky, Ron;
Burnett, John C.;
Foley, Jonathan E.;
Schaffer, David V.;
Arkin, Adam P.

Publication type:

Article

Synchronization of Firing in Cortical Fast-Spiking Interneurons at Gamma Frequencies: A Phase-Resetting Analysis.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000951

By:

Gouwens, Nathan W.;
Zeberg, Hugo;
Tsumoto, Kunichika;
Tateno, Takashi;
Aihara, Kazuyuki;
Robinson, Hugh P. C.

Publication type:

Article

Systems Biology of Coagulation Initiation: Kinetics of Thrombin Generation in Resting and Activated Human Blood.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000950

By:

Chatterjee, Manash S.;
Denney, William S.;
Huiyan Jing;
Diamond, Scott L.

Publication type:

Article

Insights into the Evolution and Emergence of a Novel Infectious Disease.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000947

By:

Kubiak, Ruben J.;
Arinaminpathy, Nimalan;
McLean, Angela R.

Publication type:

Article

Quantitative Analysis of Immune Response and Erythropoiesis during Rodent Malarial Infection.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000946

By:

Miller, Martin R.;
Råberg, Lars;
Read, Andrew F.;
Savill, Nicholas J.

Publication type:

Article

Finding the "Dark Matter" in Human and Yeast Protein Network Prediction and Modelling.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000945

By:

Ranea, Juan A. G.;
Morilla, Ian;
Lees, Jon G.;
Reid, Adam J.;
Yeats, Corin;
Clegg, Andrew B.;
Sanchez-Jimenez, Francisca;
Orengo, Christine

Publication type:

Article

Experimental and Computational Analysis of Polyglutamine-Mediated Cytotoxicity.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000944

By:

Tang, Matthew Y.;
Proctor, Carole J.;
Woulfe, John;
Gray, Douglas A.

Publication type:

Article

Literature Mining for the Discovery of Hidden Connections between Drugs, Genes and Diseases.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000943

By:

Frijters, Raoul;
van Vugt, Marianne;
Smeets, Ruben;
van Schaik, René;
de Vlieg, Jacob;
Alkema, Wynand

Publication type:

Article

Ten Simple Rules for Editing Wikipedia.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000941

By:

Logan, Darren W.;
Sandal, Massimo;
Gardner, Paul P.;
Manske, Magnus;
Bateman, Alex

Publication type:

Article

Differentially Expressed RNA from Public Microarray Data Identifies Serum Protein Biomarkers for Cross- Organ Transplant Rejection and Other Conditions.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000940

By:

Rong Chen;
Sigdel, Tara K.;
Li Li;
Kambham, Neeraja;
Dudley, Joel T.;
Szu-chuan Hsieh;
Klassen, R. Bryan;
Chen, Amery;
Caohuu, Tuyen;
Morgan, Alexander A.;
Valantine, Hannah A.;
Khush, Kiran K.;
Sarwal, Minnie M.;
Butte, Atul J.

Publication type:

Article

Molecular Dynamics Simulations Suggest that Electrostatic Funnel Directs Binding of Tamiflu to Influenza N1 Neuraminidases.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000939

By:

Ly Le;
Lee, Eric H.;
Hardy, David J.;
Truong, Thanh N.;
Schulten, Klaus

Publication type:

Article

Drug Off-Target Effects Predicted Using Structural Analysis in the Context of a Metabolic Network Model.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000938

By:

Chang, Roger L.;
Li Xie;
Lei Xie;
Bourne, Philip E.;
Palsson, Bernhard Ø.

Publication type:

Article

Semantic Similarity for Automatic Classification of Chemical Compounds.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000937

By:

Ferreira, João D.;
Couto, Francisco M.

Publication type:

Article

A Boolean Model of the Gene Regulatory Network Underlying Mammalian Cortical Area Development.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000936

By:

Giacomantonio, Clare E.;
Goodhill, Geoffrey J.

Publication type:

Article

Thermodynamics-Based Models of Transcriptional Regulation by Enhancers: The Roles of Synergistic Activation, Cooperative Binding and Short-Range Repression.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000935

By:

Xin He;
Samee, Md. Abul Hassan;
Blatti, Charles;
Sinha, Saurabh

Publication type:

Article

Optimal Information Transfer in the Cortex through Synchronization.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000934

By:

Buehlmann, Andres;
Deco, Gustavo

Publication type:

Article

Plasmodium falciparum Erythrocyte Membrane Protein 1 Diversity in Seven Genomes - Divide and Conquer.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000933

By:

Rask, Thomas S.;
Hansen, Daniel A.;
Theander, Thor G.;
Pedersen, Anders Gorm;
Lavstsen, Thomas

Publication type:

Article

Wide-Field Motion Integration in Fly VS Cells: Insights from an Inverse Approach.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000932

By:

Torben-Nielsen, Benjamin;
Stiefel, Klaus M.

Publication type:

Article

Role of Hsp70 ATPase Domain Intrinsic Dynamics and Sequence Evolution in Enabling its Functional Interactions with NEFs.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000931

By:

Ying Liu;
Gierasch, Lila M.;
Bahar, Ivet

Publication type:

Article

Evolution and Optimality of Similar Neural Mechanisms for Perception and Action during Search.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000930

By:

Sheng Zhang;
Eckstein, Miguel P.

Publication type:

Article

Instantaneous Non-Linear Processing by Pulse-Coupled Threshold Units.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000929

By:

Helias, Moritz;
Deger, Moritz;
Rotter, Stefan;
Diesmann, Markus

Publication type:

Article

An Integrative Multi-Network and Multi-Classifier Approach to Predict Genetic Interactions.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000928

By:

Pandey, Gaurav;
Bin Zhang;
Chang, Aaron N.;
Myers, Chad L.;
Jun Zhu;
Kumar, Vipin;
Schadt, Eric E.

Publication type:

Article

Synaptic Plasticity Controls Sensory Responses through Frequency-Dependent Gamma Oscillation Resonance.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000927

By:

Paik, Se-Bum;
Glaser, Donald A.

Publication type:

Article

Minimal Mesoscale Model for Protein-Mediated Vesiculation in Clathrin-Dependent Endocytosis.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000926

By:

Agrawal, Neeraj J.;
Nukpezah, Jonathan;
Radhakrishnan, Ravi

Publication type:

Article

Drug-Induced Regulation of Target Expression.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000925

By:

Iskar, Murat;
Campillos, Monica;
Kuhn, Michael;
Jensen, Lars Juhl;
van Noort, Vera;
Bork, Peer

Publication type:

Article

Rescuing Loading Induced Bone Formation at Senescence.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000924

By:

Srinivasan, Sundar;
Ausk, Brandon J.;
Prasad, Jitendra;
Threet, Dewayne;
Bain, Steven D.;
Richardson, Thomas S.;
Gross, Ted S.

Publication type:

Article

Correlated Mutations: A Hallmark of Phenotypic Amino Acid Substitutions.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000923

By:

Kowarsch, Andreas;
Fuchs, Angelika;
Frishman, Dmitrij;
Pagel, Philipp

Publication type:

Article

The Distinct Conformational Dynamics of K-Ras and H-Ras A59G.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000922

By:

Lukman, Suryani;
Grant, Barry J.;
Gorfe, Alemayehu A.;
Grant, Guy H.;
McCammon, J. Andrew

Publication type:

Article

Is Protein Folding Sub-Diffusive?

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000921

By:

Krivov, Sergei V.

Publication type:

Article

Latent Factor Analysis to Discover Pathway-Associated Putative Segmental Aneuploidies in Human Cancers.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000920

By:

Lucas, Joseph E.;
Hsiu-Ni Kung;
Chi, Jen-Tsan A.

Publication type:

Article

A Dynamic Neural Field Model of Mesoscopic Cortical Activity Captured with Voltage-Sensitive Dye Imaging.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000919

By:

Markounikau, Valentin;
Igel, Christian;
Grinvald, Amiram;
Jancke, Dirk

Publication type:

Article

Differences in Nutrient Requirements Imply a Non-Linear Emergence of Leaders in Animal Groups.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000917

By:

Sueur, Cédric;
Deneubourg, Jean-Louis;
Petit, Odile;
Couzin, Iain D.

Publication type:

Article

High Resolution Models of Transcription Factor-DNA Affinities Improve In Vitro and In Vivo Binding Predictions.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000916

By:

Agius, Phaedra;
Arvey, Aaron;
Chang, William;
Noble, William Stafford;
Leslie, Christina

Publication type:

Article

Occurrence and Treatment of Bone Atrophic Non-Unions Investigated by an Integrative Approach.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000915

By:

Geris, Liesbet;
Reed, Anita A. C.;
Sloten, Jos Vander;
Simpson, A. Hamish R. W.;
van Oosterwyck, Hans

Publication type:

Article

Regression Analysis for Constraining Free Parameters in Electrophysiological Models of Cardiac Cells.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000914

By:

Sarkar, Amrita X.;
Sobie, Eric A.

Publication type:

Article

Diversity and Plasticity of Th Cell Types Predicted from Regulatory Network Modelling.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000912

By:

Naldi, Aurélien;
Carneiro, Jorge;
Chaouiya, Claudine;
Thieffry, Denis

Publication type:

Article

Current Estimates for HIV-1 Production Imply Rapid Viral Clearance in Lymphoid Tissues.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000906

By:

de Boer, Rob J.;
Ribeiro, Ruy M.;
Perelson, Alan S.

Publication type:

Article

Graph-Based Analysis of the Metabolic Exchanges between Two Co-Resident Intracellular Symbionts, Baumannia cicadellinicola and Sulcia muelleri, with Their Insect Host, Homalodisca coagulata.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000904

By:

Cottret, Ludovic;
Milreu, Paulo Vieira;
Acuñ a, Vicente;
Marchetti-Spaccamela, Alberto;
Stougie, Leen;
Charles, Hubert;
Sagot, Marie-France

Publication type:

Article

Pavlovian-Instrumental Interaction in 'Observing Behavior'.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000903

By:

Beierholm, Ulrik R.;
Dayan, Peter

Publication type:

Article

Forcing Versus Feedback: Epidemic Malaria and Monsoon Rains in Northwest India.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000898

By:

Laneri, Karina;
Bhadra, Anindya;
Ionides, Edward L.;
Bouma, Menno;
Dhiman, Ramesh C.;
Yadav, Rajpal S.;
Pascual, Mercedes

Publication type:

Article