Works in PLoS Computational Biology, 2009, Vol 5, Issue 7

Results: 31

A Three Species Model to Simulate Application of Hyperbaric Oxygen Therapy to Chronic Wounds.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000451

By:

Flegg, Jennifer A.;
McElwain, Donald L. S.;
Byrne, Helen M.;
Turner, Ian W.

Publication type:

Article

Building Disease-Specific Drug-Protein Connectivity Maps from Molecular Interaction Networks and PubMed Abstracts.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000450

By:

Jiao Li;
Xiaoyan Zhu;
Chen, Jake Yue

Publication type:

Article

Small RNAs Originated from Pseudogenes: cis- or trans- Acting?

Published in:

PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000449

By:

Xingyi Guo;
Zhaolei Zhang;
Gerstein, Mark B.;
Deyou Zheng

Publication type:

Article

Cooperativity Dominates the Genomic Organization of p53-Response Elements: A Mechanistic View.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000448

By:

Yongping Pan;
Nussinov, Ruth

Publication type:

Article

Stem Cell Proliferation and Quiescence-Two Sides of the Same Coin.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000447

By:

Glauche, Ingmar;
Moore, Kateri;
Thielecke, Lars;
Horn, Katrin;
Loeffler, Markus;
Roeder, Ingo

Publication type:

Article

Identification of a Kinase Profile that Predicts Chromosome Damage Induced by Small Molecule Kinase Inhibitors.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000446

By:

Olaharski, Andrew J.;
Gonzaludo, Nina;
Bitter, Hans;
Goldstein, David;
Kirchner, Stephan;
Uppal, Hirdesh;
Kolaja, Kyle

Publication type:

Article

Topography of Extracellular Matrix Mediates Vascular Morphogenesis and Migration Speeds in Angiogenesis.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000445

By:

Bauer, Amy L.;
Jackson, Trachette L.;
Yi Jiang

Publication type:

Article

Power Efficiency of Outer Hair Cell Somatic Electromotility.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000444

By:

Rabbitt, Richard D.;
Clifford, Sarah;
Breneman, Kathryn D.;
Farrell, Brenda;
Brownell, William E.

Publication type:

Article

Semantic Similarity in Biomedical Ontologies.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000443

By:

Pesquita, Catia;
Faria, Daniel;
Falcão, André O.;
Lord, Phillip;
Couto, Francisco M.

Publication type:

Article

Identification of a Topological Characteristic Responsible for the Biological Robustness of Regulatory Networks.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000442

By:

Yangle Wu;
Xiaomeng Zhang;
Jianglei Yu;
Qi Ouyang

Publication type:

Article

Harvesting Candidate Genes Responsible for Serious Adverse Drug Reactions from a Chemical-Protein Interactome.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000441

By:

Lun Yang;
Jian Chen;
Lin He

Publication type:

Article

PoreWalker: A Novel Tool for the Identification and Characterization of Channels in Transmembrane Proteins from Their Three-Dimensional Structure.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000440

By:

Pellegrini-Calace, Marialuisa;
Maiwald, Tim;
Thornton, Janet M.

Publication type:

Article

Computational Analysis of Viscoelastic Properties of Crosslinked Actin Networks.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000439

By:

Taeyoon Kim;
Wonmuk Hwang;
Hyungsuk Lee;
Kamm, Roger D.

Publication type:

Article

A Neural Computational Model of Incentive Salience.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000437

By:

Zhang, Jun;
Berridge, Kent C.;
Tindell, Amy J.;
Smith, Kyle S.;
Aldridge, J. Wayne

Publication type:

Article

The Natural Statistics of Audiovisual Speech.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000436

By:

Chandrasekaran, Chandramouli;
Trubanova, Andrea;
Stillittano, Sébastien;
Caplier, Alice;
Ghazanfar, Asif A.

Publication type:

Article

Computational Fragment-Based Binding Site Identification by Ligand Competitive Saturation.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000435

By:

Guvench, Olgun;
MacKerell Jr., Alexander D.

Publication type:

Article

An Experimental and Computational Study of the Effect of ActA Polarity on the Speed of Listeria monocytogenes Actin-based Motility.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000434

By:

Rafelski, Susanne M.;
Alberts, Jonathan B.;
Odell, Garrett M.

Publication type:

Article

Relating Neuronal Firing Patterns to Functional Differentiation of Cerebral Cortex.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000433

By:

Shinomoto, Shigeru;
Kim, Hideaki;
Shimokawa, Takeaki;
Matsuno, Nanae;
Funahashi, Shintaro;
Shima, Keisetsu;
Fujita, Ichiro;
Tamura, Hiroshi;
Doi, Taijiro;
Kawano, Kenji;
Inaba, Naoko;
Fukushima, Kikuro;
Kurkin, Sergei;
Kurata, Kiyoshi;
Taira, Masato;
Tsutsui, Ken-Ichiro;
Komatsu, Hidehiko;
Ogawa, Tadashi;
Koida, Kowa;
Tanji, Jun

Publication type:

Article

Integrating Sequencing Technologies in Personal Genomics: Optimal Low Cost Reconstruction of Structural Variants.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000432

By:

Jiang Du;
Bjornson, Robert D.;
Zhang, Zhengdong D.;
Yong Kong;
Snyder, Michael;
Gerstein, Mark B.

Publication type:

Article

The Gene Ontology's Reference Genome Project: A Unified Framework for Functional Annotation across Species.

Published in:: PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000431
Publication type:: Article

Bistable Perception Modeled as Competing Stochastic Integrations at Two Levels.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000430

By:

Gigante, Guido;
Mattia, Maurizio;
Braun, Jochen;
Del Giudice, Paolo

Publication type:

Article

What a Plant Sounds Like: The Statistics of Vegetation Echoes as Received by Echolocating Bats.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000429

By:

Yovel, Yossi;
Stilz, Peter;
Franz, Matthias O.;
Boonman, Arjan;
Schnitzler, Hans-Ulrich

Publication type:

Article

Analysis of the Free-Energy Surface of Proteins from Reversible Folding Simulations.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000428

By:

Allen, Lucy R.;
Krivov, Sergei V.;
Paci, Emanuele

Publication type:

Article

A Compact Representation of Drawing Movements with Sequences of Parabolic Primitives.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000427

By:

Polyakov, Felix;
Drori, Rotem;
Ben-Shaul, Yoram;
Abeles, Moshe;
Flash, Tamar

Publication type:

Article

Movement Timing and Invariance Arise from Several Geometries.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000426

By:

Bennequin, Daniel;
Fuchs, Ronit;
Berthoz, Alain;
Flash, Tamar

Publication type:

Article

Dynamic Modeling of Vaccinating Behavior as a Function of Individual Beliefs.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000425

By:

Coelho, Flávio Codeço;
Codeço, Claudia T.

Publication type:

Article

A Quick Guide to Organizing Computational Biology Projects.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000424

By:

Noble, William Stafford

Publication type:

Article

Drug Discovery Using Chemical Systems Biology: Repositioning the Safe Medicine Comtan to Treat Multi- Drug and Extensively Drug Resistant Tuberculosis.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000423

By:

Kinnings, Sarah L.;
Liu, Nina;
Buchmeier, Nancy;
Tonge, Peter J.;
Lei Xie;
Bourne, Philip E.

Publication type:

Article

Predicting the Distribution of Spiral Waves from Cell Properties in a Developmental-Path Model of Dictyostelium Pattern Formation.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000422

By:

Geberth, Daniel;
Hütt, Marc-Thorsten

Publication type:

Article

Investigating the Conformational Stability of Prion Strains through a Kinetic Replication Model.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000420

By:

Zampieri, Mattia;
Legname, Giuseppe;
Altafini, Claudio

Publication type:

Article

Getting Started in Text Mining: Part Two6.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000411

By:

Rzhetsky, Andrey;
Seringhaus, Michael;
Gerstein, Mark B.

Publication type:

Article