Works in PLoS Computational Biology, 2009, Vol 5, Issue 6

Results: 27

Maximum-Likelihood Model Averaging To Profile Clustering of Site Types across Discrete Linear Sequences.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000421

By:

Zhang Zhang;
Townsend, Jeffrey P.

Publication type:

Article

Optimal Control Predicts Human Performance on Objects with Internal Degrees of Freedom.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000419

By:

Nagengast, Arne J.;
Braun, Daniel A.;
Wolpert, Daniel M.

Publication type:

Article

Taking the Lag out of Jet Lag through Model-Based Schedule Design.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000418

By:

Dean II, Dennis A.;
Forger, Daniel B.;
Klerman, Elizabeth B.

Publication type:

Article

Global Prediction of Tissue-Specific Gene Expression and Context-Dependent Gene Networks in Caenorhabditis.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000417

By:

Chikina, Maria D.;
Huttenhower, Curtis;
Murphy, Coleen T.;
Troyanskaya, Olga G.

Publication type:

Article

Quantitative Analysis of Mechanisms That Govern Red Blood Cell Age Structure and Dynamics during Anaemia.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000416

By:

Savill, Nicholas J.;
Chadwick, William;
Reece, Sarah E.

Publication type:

Article

FINDSITE<sup>LHM</sup>: A Threading-Based Approach to Ligand Homology Modeling.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000405

By:

Brylinski, Michal;
Skolnick, Jeffrey

Publication type:

Article

Recurrent Network Models for Perfect Temporal Integration of Fluctuating Correlated Inputs.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000404

By:

Okamoto, Hiroshi;
Fukai, Tomoki

Publication type:

Article

Functional States of the Genome-Scale Escherichia Coli Transcriptional Regulatory System.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000403

By:

Gianchandani, Erwin P.;
Joyce, Andrew R.;
Palsson, Bernhard Ø.;
Papin, Jason A.

Publication type:

Article

Active Dendrites Enhance Neuronal Dynamic Range.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000402

By:

Gollo, Leonardo L.;
Kinouchi, Osame;
Copelli, Mauro

Publication type:

Article

SpaK/SpaR Two-component System Characterized by a Structure-driven Domain-fusion Method and in Vitro Phosphorylation Studies.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000401

By:

Chakicherla, Anu;
Ecale Zhou, Carol L.;
Dang, Martha Ligon;
Rodriguez, Virginia;
Hansen, J. Norman;
Zemla, Adam

Publication type:

Article

Exploring the Free Energy Landscape: From Dynamics to Networks and Back.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000415

By:

Prada-Gracia, Diego;
Gomez-Gardenes, Jesus;
Echenique, Pablo;
Falo, Fernando

Publication type:

Article

Identification of Yeast Transcriptional Regulation Networks Using Multivariate Random Forests.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000414

By:

Yuanyuan Xiao;
Segal, Mark R.

Publication type:

Article

Integrated Assessment of Genomic Correlates of Protein Evolutionary Rate.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000413

By:

Yu Xia;
Franzosa, Eric A.;
Gerstein, Mark B.

Publication type:

Article

Modeling and Inferring Cleavage Patterns in Proliferating Epithelia.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000412

By:

Patel, Ankit B.;
Gibson, William T.;
Gibson, Matthew C.;
Nagpal, Radhika

Publication type:

Article

Understanding the Adaptive Growth Strategy of Lactobacillus plantarum by In Silico Optimisation.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000410

By:

Teusink, Bas;
Wiersma, Anne;
Jacobs, Leo;
Notebaart, Richard A.;
Smid, Eddy J.

Publication type:

Article

Spatio-Temporal Dynamics of Yeast Mitochondrial Biogenesis: Transcriptional and Post-Transcriptional mRNA Oscillatory Modules.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 6, p. 1

By:

Lelandais, Gaelle;
Saint-Georges, Yann;
Geneix, Colette;
Al-Shikhley, Liza;
Dujardin, Genevieve;
Jacq, Claude

Publication type:

Article

Modeling the Impact of Lesions in the Human Brain.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000408

By:

Alstott, Jeffrey;
Breakspear, Michael;
Hagmann, Patric;
Cammoun, Leila;
Sporns, Olaf

Publication type:

Article

Directed Mammalian Gene Regulatory Networks Using Expression and Comparative Genomic Hybridization Microarray Data from Radiation Hybrids.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000407

By:

Ahn, Sangtae;
Wang, Richard T.;
Park, Christopher C.;
Lin, Andy;
Leahy, Richard M.;
Lange, Kenneth;
Smith, Desmond J.

Publication type:

Article

A Probabilistic Model of RNA Conformational Space.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000406

By:

Frellsen, Jes;
Moltke, Ida;
Thiim, Martin;
Mardia, Kanti V.;
Ferkinghoff-Borg, Jesper;
Hamelryck, Thomas

Publication type:

Article

The Effect of Ongoing Exposure Dynamics in Dose Response Relationships.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000399

By:

Pujol, Josep M.;
Eisenberg, Joseph E.;
Haas, Charles N.;
Koopman, James S.

Publication type:

Article

The Voice of Bats: How Greater Mouse-eared Bats Recognize Individuals Based on Their Echolocation Calls.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000400

By:

Yovel, Yossi;
Melcon, Mariana Laura;
Franz, Matthias O.;
Denzinger, Annette;
Schnitzler, Hans-Ulrich

Publication type:

Article

Integrating Statistical Predictions and Experimental Verifications for Enhancing Protein-Chemical Interaction Predictions in Virtual Screening.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000397

By:

Nagamine, Nobuyoshi;
Shirakawa, Takayuki;
Minato, Yusuke;
Torii, Kentaro;
Kobayashi, Hiroki;
Imoto, Masaya;
Sakakibara, Yasubumi

Publication type:

Article

The Dynamics of T-Cell Receptor Repertoire Diversity Following Thymus Transplantation for DiGeorge Anomaly.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000396

By:

Ciupe, Stanca M.;
Devlin, Blythe H.;
Markert, M. Louise;
Kepler, Thomas B.

Publication type:

Article

The Need for Centralization of Computational Biology Resources.

Published in:

2009

By:

Lewitter, Fran;
Rebhan, Michael;
Richter, Brent;
Sexton, David

Publication type:

Editorial

Ten Simple Rules for Choosing between Industry and Academia.

Published in:

PLoS Computational Biology, 2009, v. 5, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000388

By:

Searls, David B.

Publication type:

Article

Managing and Analyzing Next-Generation Sequence Data.

Published in:

2009

By:

Richter, Brent G.;
Sexton, David P.

Publication type:

Opinion

Establishing a Successful Bioinformatics Core Facility Team.

Published in:

2009

By:

Lewitter, Fran;
Rebhan, Michael

Publication type:

Opinion