Cryo-EM ligand building using AlphaFold3-like model and molecular dynamics.
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Works in PLoS Computational Biology, 2025, Vol 21, Issue 8
Results: 25
1
2
A hierarchical multiscale model of forward and backward alpha-band traveling waves in the visual system.
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- PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013294
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3
Comparing the effectiveness of ring and block-vaccination strategies on networks.
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- PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013274
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4
Barking up the right tree: Immune checkpoint signatures of human and dog cancers.
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- PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013270
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5
A model of anaerobic tissue perfusion during trauma—Lactate trajectory curvature can determine recovery.
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- PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1012820
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6
Visuoinertial and visual feedback in online steering control.
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- PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1012659
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7
Optimal control of multiple myeloma assuming drug resistance and off-target effects.
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- PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1012225
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8
A neural network model enables worm tracking in challenging conditions and increases signal-to-noise ratio in phenotypic screens.
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- PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013345
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9
Machine learning on multiple epigenetic features reveals H3K27Ac as a driver of gene expression prediction across patients with glioblastoma.
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- PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1012272
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10
Ten simple rules for research with humans.
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- PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013362
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11
Multi-context modeling of driver pathways reveals common and specific mechanisms across 23 cancer types.
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- PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013349
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12
Excitatory/inhibitory ratio disruption modulates neural synchrony and flow directions in a cortical microcircuit.
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- PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013306
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13
novoStoic2.0: An integrated framework for pathway synthesis, thermodynamic evaluation, and enzyme selection.
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- PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1012516
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14
Modelling the potential use of pre-exposure prophylaxis to reduce nosocomial SARS-CoV-2 transmission.
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- PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013361
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15
COEXIST: Coordinated single-cell integration of serial multiplexed tissue images.
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- PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013325
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16
Identification of the governing equation of stimulus-response data for run-and-tumble dynamics.
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- PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013287
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17
Mutations in tumor signaling, metastases, and synthetic lethality establish distinct patterns.
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- PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013351
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18
Correction: Aggregating multiple test results to improve medical decision-making.
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- 2025
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- Correction Notice
19
Nonparametric serial interval estimation with uniform mixtures.
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- PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013338
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20
Socioeconomic determinants of protective behaviors and contact patterns in the post-COVID-19 pandemic era: A cross-sectional study in Italy.
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- PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013262
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21
Emergence of cooperation promoted by higher-order strategy updates.
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- PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1012891
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22
Integrating AlphaFold2 models and clinical data to improve the assessment of Short Linear Motifs (SLiMs) and their variants' pathogenicity.
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- PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1012829
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23
SuperEdgeGO: Edge-supervised graph representation learning for enhanced protein function prediction.
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- PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013343
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24
Continual familiarity decoding from recurrent connections in spiking networks.
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- PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013304
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25
Mathematical modeling suggests 14-3-3 proteins modulate RAF paradoxical activation.
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- PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013297
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