Works matching IS 1553-734X AND VI 21 AND IP 8 AND DT 2025

Results: 25

Cryo-EM ligand building using AlphaFold3-like model and molecular dynamics.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013367

By:

Haloi, Nandan;
Howard, Rebecca J.;
Lindahl, Erik

Publication type:

Article

A hierarchical multiscale model of forward and backward alpha-band traveling waves in the visual system.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013294

By:

Schwenk, Jakob C. B.;
Alamia, Andrea

Publication type:

Article

Comparing the effectiveness of ring and block-vaccination strategies on networks.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013274

By:

Scianna, Matteo;
Gallotti, Riccardo;
Tizzoni, Michele;
Artime, Oriol;
Alvarez-Zuzek, Lucila G.

Publication type:

Article

Barking up the right tree: Immune checkpoint signatures of human and dog cancers.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013270

By:

Kocikowski, Mikolaj;
Yébenes Mayordomo, Marcos;
Alfaro, Javier;
Parys, Maciej

Publication type:

Article

A model of anaerobic tissue perfusion during trauma—Lactate trajectory curvature can determine recovery.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1012820

By:

Baird, Austin;
White, Steven A.;
Bisgaard, Erika K.;
Wentz, Rachel K.;
Sims, Edward M.;
Hananel, David

Publication type:

Article

Visuoinertial and visual feedback in online steering control.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1012659

By:

Liu, Jo-Yu;
Cooke, James R. H.;
Selen, Luc J. P.;
Medendorp, W. Pieter

Publication type:

Article

Optimal control of multiple myeloma assuming drug resistance and off-target effects.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1012225

By:

Lefevre, James G.;
Lawson, Brodie A. J.;
Burrage, Pamela M.;
Donovan, Diane M.;
Burrage, Kevin

Publication type:

Article

A neural network model enables worm tracking in challenging conditions and increases signal-to-noise ratio in phenotypic screens.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013345

By:

Weheliye, Weheliye H.;
Rodriguez, Javier;
Feriani, Luigi;
Javer, Avelino;
Uhlmann, Virginie;
Brown, André E. X.

Publication type:

Article

Machine learning on multiple epigenetic features reveals H3K27Ac as a driver of gene expression prediction across patients with glioblastoma.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1012272

By:

Suita, Yusuke;
Bright Jr, Hardy;
Pu, Yuan;
Toruner, Merih Deniz;
Idehen, Jordan;
Tapinos, Nikos;
Singh, Ritambhara

Publication type:

Article

Ten simple rules for research with humans.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013362

By:

Coates, Madeline K.;
Sava, Tudor V.;
Tashjian, Sarah M.

Publication type:

Article

Multi-context modeling of driver pathways reveals common and specific mechanisms across 23 cancer types.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013349

By:

Zhou, Wenjia;
Zhang, Junhua

Publication type:

Article

Excitatory/inhibitory ratio disruption modulates neural synchrony and flow directions in a cortical microcircuit.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013306

By:

Wagatsuma, Nobuhiko;
Nobukawa, Sou;
Kurikawa, Tomoki

Publication type:

Article

novoStoic2.0: An integrated framework for pathway synthesis, thermodynamic evaluation, and enzyme selection.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1012516

By:

Upadhyay, Vikas;
Anand, Mohit;
Maranas, Costas D.

Publication type:

Article

Modelling the potential use of pre-exposure prophylaxis to reduce nosocomial SARS-CoV-2 transmission.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013361

By:

Stewart, Lauren;
Evans, Stephanie;
Brevini, Teresa;
Sampaziotis, Fotios;
Illingworth, Christopher J. R.

Publication type:

Article

COEXIST: Coordinated single-cell integration of serial multiplexed tissue images.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013325

By:

Heussner, Robert T.;
Watson, Cameron F.;
Eddy, Christopher Z.;
Wang, Kunlun;
Cramer, Eric M.;
Creason, Allison L.;
Mills, Gordon B.;
Chang, Young Hwan

Publication type:

Article

Identification of the governing equation of stimulus-response data for run-and-tumble dynamics.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013287

By:

Lei, Shicong;
Li, Yu'an;
Ma, Zheng;
Zhang, Hepeng;
Tang, Min

Publication type:

Article

Mutations in tumor signaling, metastases, and synthetic lethality establish distinct patterns.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013351

By:

Yavuz, Bengi Ruken;
Sahin, Ugur;
Jang, Hyunbum;
Nussinov, Ruth;
Tuncbag, Nurcan

Publication type:

Article

Correction: Aggregating multiple test results to improve medical decision-making.

Published in:

2025

By:

Böttcher, Lucas;
D'Orsogna, Maria R.;
Chou, Tom

Publication type:

Correction Notice

Nonparametric serial interval estimation with uniform mixtures.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013338

By:

Gressani, Oswaldo;
Hens, Niel

Publication type:

Article

Socioeconomic determinants of protective behaviors and contact patterns in the post-COVID-19 pandemic era: A cross-sectional study in Italy.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013262

By:

Tizzani, Michele;
Gauvin, Laetitia

Publication type:

Article

Emergence of cooperation promoted by higher-order strategy updates.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1012891

By:

Wang, Dini;
Yi, Peng;
Hong, Yiguang;
Chen, Jie;
Yan, Gang

Publication type:

Article

Integrating AlphaFold2 models and clinical data to improve the assessment of Short Linear Motifs (SLiMs) and their variants' pathogenicity.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1012829

By:

Brunello, Franco Gino;
Erra, Lorenzo;
Nicola, Juan;
Martí, Marcelo Adrián

Publication type:

Article

SuperEdgeGO: Edge-supervised graph representation learning for enhanced protein function prediction.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013343

By:

Zhang, Shugang;
Li, Yuntong;
Ma, Wenjian;
Cai, Qing;
Qin, Jing;
Bi, Xiangpeng;
Jiang, Huasen;
Huang, Xiaoyu;
Wei, Zhiqiang

Publication type:

Article

Continual familiarity decoding from recurrent connections in spiking networks.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013304

By:

Zemliak, Viktoria;
Pipa, Gordon;
Nieters, Pascal

Publication type:

Article

Mathematical modeling suggests 14-3-3 proteins modulate RAF paradoxical activation.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 8, p. 1, doi. 10.1371/journal.pcbi.1013297

By:

Mendiratta, Gaurav;
Abbott, Kodye;
Li, Yao-Cheng;
Yu, Jingting;
Carlip, Peter;
Tong, Melinda;
Huang, Jianfeng;
Shokhirev, Maxim N.;
McFall, Thomas;
Wahl, Geoffrey M.;
Stites, Edward C.

Publication type:

Article