Works matching IS 14747596 AND DT 2025 AND VI 26 AND IP 1

Results: 219
    1

    Joint representation and visualization of derailed cell states with Decipher.

    Published in:
    Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-025-03682-8
    By:
    • Nazaret, Achille;
    • Fan, Joy Linyue;
    • Lavallée, Vincent-Philippe;
    • Burdziak, Cassandra;
    • Cornish, Andrew E.;
    • Kiseliovas, Vaidotas;
    • Bowman, Robert L.;
    • Masilionis, Ignas;
    • Chun, Jaeyoung;
    • Eisman, Shira E.;
    • Wang, James;
    • Hong, Justin;
    • Shi, Lingting;
    • Levine, Ross L.;
    • Mazutis, Linas;
    • Blei, David;
    • Pe'er, Dana;
    • Azizi, Elham
    Publication type:
    Article
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    Epigenetic priming of mammalian embryonic enhancer elements coordinates developmental gene networks.

    Published in:
    Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-025-03658-8
    By:
    • Todd, Christopher D.;
    • Ijaz, Jannat;
    • Torabi, Fereshteh;
    • Dovgusha, Oleksandr;
    • Bevan, Stephen;
    • Cracknell, Olivia;
    • Lohoff, Tim;
    • Clark, Stephen;
    • Argelaguet, Ricard;
    • Pierce, Juliette;
    • Kafetzopoulos, Ioannis;
    • Santambrogio, Alice;
    • Nichols, Jennifer;
    • von Meyenn, Ferdinand;
    • Günesdogan, Ufuk;
    • Schoenfelder, Stefan;
    • Reik, Wolf
    Publication type:
    Article
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    Direct genetic transformation bypasses tumor-associated DNA methylation alterations.

    Published in:
    Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-025-03650-2
    By:
    • Hetzel, Sara;
    • Hodis, Eran;
    • Torlai Triglia, Elena;
    • Kovacsovics, Alexander;
    • Steinmann, Kathleen;
    • Gnirke, Andreas;
    • Cui, Meiying;
    • McQuaid, Daniel;
    • Weigert, Raha;
    • Pohl, Georg;
    • Muzumdar, Mandar D.;
    • Leyvraz, Serge;
    • Keilholz, Ulrich;
    • Yaspo, Marie-Laure;
    • Regev, Aviv;
    • Kretzmer, Helene;
    • Smith, Zachary D.;
    • Meissner, Alexander
    Publication type:
    Article
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    Multi-ancestry genome-wide meta-analysis of 56,241 individuals identifies known and novel cross-population and ancestry-specific associations as novel risk loci for Alzheimer's disease.

    Published in:
    Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-025-03564-z
    By:
    • Rajabli, Farid;
    • Benchek, Penelope;
    • Tosto, Giuseppe;
    • Kushch, Nicholas;
    • Sha, Jin;
    • Bazemore, Katrina;
    • Zhu, Congcong;
    • Lee, Wan-Ping;
    • Haut, Jacob;
    • Hamilton-Nelson, Kara L.;
    • Wheeler, Nicholas R.;
    • Zhao, Yi;
    • Farrell, John J.;
    • Grunin, Michelle A.;
    • Leung, Yuk Yee;
    • Kuksa, Pavel P.;
    • Li, Donghe;
    • da Fonseca, Eder Lucio;
    • Mez, Jesse B.;
    • Palmer, Ellen L.
    Publication type:
    Article
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    Enrichable cross-linkers for mapping direct protein interactions.

    Published in:
    Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-025-03669-5
    By:
    • Wu, Ting;
    • Zhou, Hang-Xu;
    • Tian, Jing;
    • Zhou, Rong;
    • Huangfu, Shangwei;
    • Jin, Bi-Kun;
    • Sablina, Anna;
    • Zhou, Fangfang;
    • Chen, Hongli;
    • Tang, Shibing;
    • Zhang, Long;
    • Yang, Bing
    Publication type:
    Article
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    Long-term DNA methylation changes mediate heterologous cytokine responses after BCG vaccination.

    Published in:
    Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-025-03611-9
    By:
    • Qi, Cancan;
    • Liu, Zhaoli;
    • Kilic, Gizem;
    • Sarlea, Andrei S.;
    • Debisarun, Priya A.;
    • Liu, Xuan;
    • Mekonnen, Yonatan Ayalew;
    • Li, Wenchao;
    • Grasshoff, Martin;
    • Alaswad, Ahmed;
    • Petkoglou, Apostolos;
    • Koeken, Valerie A. C. M.;
    • Moorlag, Simone J. C. F. M.;
    • de Bree, L. Charlotte J.;
    • Mourits, Vera P.;
    • Joosten, Leo A. B.;
    • Li, Yang;
    • Netea, Mihai G.;
    • Xu, Cheng-Jian
    Publication type:
    Article
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    A genome-wide association study integrated with single-cell and bulk profiles uncovers susceptibility genes for nasopharyngeal carcinoma involved in tumorigenesis via regulation of T cells.

    Published in:
    Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-025-03657-9
    By:
    • Wang, Tong-Min;
    • Zhang, Wen-Li;
    • Xie, Jin-Ru;
    • He, Yong-Qiao;
    • Tang, Minzhong;
    • Xue, Wen-Qiong;
    • Yang, Da-Wei;
    • Deng, Chang-Mi;
    • Diao, Hua;
    • Mai, Zhi-Ming;
    • Xiao, Ruo-Wen;
    • Liao, Ying;
    • Li, Dan-Hua;
    • Wu, Yan-Xia;
    • Jiang, Cheng-Tao;
    • Zhang, Jiang-Bo;
    • Chen, Xue-Yin;
    • Du, Yan;
    • Tang, Cao-Li;
    • Jia, Wen-Hui
    Publication type:
    Article
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    Optimized in-solution enrichment of over a million ancient human SNPs.

    Published in:
    Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-025-03622-6
    By:
    • Davidson, Roberta;
    • Roca-Rada, Xavier;
    • Ravishankar, Shyamsundar;
    • Taufik, Leonard;
    • Haarkötter, Christian;
    • Collen, Evelyn;
    • Williams, Matthew P.;
    • Webb, Peter;
    • Mahmud, M. Irfan;
    • Djami, Erlin Novita Idje;
    • Purnomo, Gludhug A.;
    • Santos, Cristina;
    • Malgosa, Assumpció;
    • Manzanilla, Linda R.;
    • Silva, Ana Maria;
    • Tereso, Sofia;
    • Matos, Vítor;
    • Carvalho, Pedro C.;
    • Fernandes, Teresa;
    • Maurer, Anne-France
    Publication type:
    Article
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    Automated integration of multi-slice spatial transcriptomics data in 2D and 3D using VR-Omics.

    Published in:
    Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-025-03630-6
    By:
    • Bienroth, Denis;
    • Charitakis, Natalie;
    • Wong, Dillon;
    • Zhang, Yunhan C.;
    • Jaeger-Honz, Sabrina;
    • Ding, Jialin;
    • Watt, Kevin I.;
    • Stolper, Julian;
    • Chambers-Smith, Hazel;
    • MacGregor, Duncan;
    • Christiansen, Bronwyn;
    • Vivien, Celine;
    • Piers, Adam T.;
    • Waylen, Lisa N.;
    • Hoffmann, Lucas B.;
    • Tang, Jessica;
    • La, Hue M.;
    • Du, Mei R. M.;
    • Mohenska, Monika;
    • Polo, Jose M.
    Publication type:
    Article
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    Geometric Diagrams of Genomes: constructing a visual grammar for 3D genomics.

    Published in:
    Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-025-03646-y
    By:
    • Molins-Pitarch, Carla;
    • Khao, Jonathan;
    • Bonet, Santiago;
    • Justicia, Yolanda;
    • Altube, Clementina;
    • Goodstadt, Mike;
    • Ribot, Francesc;
    • Aiden, Erez Lieberman;
    • Neretti, Nicola;
    • McGill, Gaël G.;
    • Marti-Renom, Marc A.
    Publication type:
    Article
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    Mapping MAVE data for use in human genomics applications.

    Published in:
    Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-025-03647-x
    By:
    • Arbesfeld, Jeremy A.;
    • Da, Estelle Y.;
    • Stevenson, James S.;
    • Kuzma, Kori;
    • Paul, Anika;
    • Farris, Tierra;
    • Capodanno, Benjamin J.;
    • Grindstaff, Sally B.;
    • Riehle, Kevin;
    • Saraiva-Agostinho, Nuno;
    • Safer, Jordan F.;
    • Casper, Jonathan;
    • Haeussler, Maximilian;
    • Milosavljevic, Aleksandar;
    • Foreman, Julia;
    • Firth, Helen V.;
    • Hunt, Sarah E.;
    • Iqbal, Sumaiya;
    • Cline, Melissa S.;
    • Rubin, Alan F.
    Publication type:
    Article
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    Comparison of spatial transcriptomics technologies using tumor cryosections.

    Published in:
    Genome Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s13059-025-03624-4
    By:
    • Rademacher, Anne;
    • Huseynov, Alik;
    • Bortolomeazzi, Michele;
    • Wille, Sina Jasmin;
    • Schumacher, Sabrina;
    • Sant, Pooja;
    • Keitel, Denise;
    • Okonechnikov, Konstantin;
    • Ghasemi, David R.;
    • Pajtler, Kristian W.;
    • Mallm, Jan-Philipp;
    • Rippe, Karsten
    Publication type:
    Article
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