Works matching IS 14747596 AND DT 2024 AND VI 25
Results: 311
Chromatin-based memory as a self-stabilizing influence on cell identity.
- Published in:
- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03461-x
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- Article
Descart: a method for detecting spatial chromatin accessibility patterns with inter-cellular correlations.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03458-6
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- Article
vmrseq: probabilistic modeling of single-cell methylation heterogeneity.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03457-7
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- Article
Multi-omics approaches reveal that diffuse midline gliomas present altered DNA replication and are susceptible to replication stress therapy.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03460-y
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- Article
Molecular dependencies and genomic consequences of a global DNA damage tolerance defect.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03451-z
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- Article
Promoter capture Hi-C identifies promoter-related loops and fountain structures in Arabidopsis.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03465-7
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- Article
HIPSD&R-seq enables scalable genomic copy number and transcriptome profiling.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03450-0
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- Article
Cas12f1 gene drives propagate efficiently in herpesviruses and induce minimal resistance.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03455-9
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- Article
GenomeDelta: detecting recent transposable element invasions without repeat library.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03459-5
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- Article
Transcriptional regulatory network reveals key transcription factors for regulating agronomic traits in soybean.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03454-w
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- Article
Evaluating data requirements for high-quality haplotype-resolved genomes for creating robust pangenome references.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03452-y
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- Article
EpiGePT: a pretrained transformer-based language model for context-specific human epigenomics.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03449-7
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- Article
SQUiD: ultra-secure storage and analysis of genetic data for the advancement of precision medicine.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03447-9
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- Article
SyntheVAEiser: augmenting traditional machine learning methods with VAE-based gene expression sample generation for improved cancer subtype predictions.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03431-3
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- Article
HTAD: a human-in-the-loop framework for supervised chromatin domain detection.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03445-x
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- Article
Systemic evaluation of various CRISPR/Cas13 orthologs for knockdown of targeted transcripts in plants.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03448-8
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- Article
EpiCHAOS: a metric to quantify epigenomic heterogeneity in single-cell data.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03446-w
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- Article
Chromatin loops gather targets of upstream regulators together for efficient gene transcription regulation during vernalization in wheat.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03437-x
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- Publication type:
- Article
Hierarchical annotation of eQTLs by H-eQTL enables identification of genes with cell type-divergent regulation.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03440-2
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- Article
Cohesin distribution alone predicts chromatin organization in yeast via conserved-current loop extrusion.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03432-2
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- Article
Increased spatial coupling of integrin and collagen IV in the immunoresistant clear-cell renal-cell carcinoma tumor microenvironment.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03435-z
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- Article
Genetic-by-age interaction analyses on complex traits in UK Biobank and their potential to identify effects on longitudinal trait change.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03439-9
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- Article
Publisher Correction: Tagging large CNV blocks in wheat boosts digitalization of germplasm resources by ultra-low-coverage sequencing.
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- 2024
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- Publication type:
- Correction Notice
scStateDynamics: deciphering the drug-responsive tumor cell state dynamics by modeling single-cell level expression changes.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03436-y
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- Article
MoCHI: neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational scanning data.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03444-y
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- Article
Functional screening reveals genetic dependencies and diverging cell cycle control in atypical teratoid rhabdoid tumors.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03438-w
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- Article
Adenine base editors induce off-target structure variations in mouse embryos and primary human T cells.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03434-0
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- Article
scDOT: optimal transport for mapping senescent cells in spatial transcriptomics.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03426-0
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- Article
Transcription of a centromere-enriched retroelement and local retention of its RNA are significant features of the CENP-A chromatin landscape.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03433-1
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- Article
GraphPCA: a fast and interpretable dimension reduction algorithm for spatial transcriptomics data.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03429-x
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- Article
scStateDynamics: deciphering the drug-responsive tumor cell state dynamics by modeling single-cell level expression changes.
- Published in:
- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03436-y
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- Publication type:
- Article
The genomic portrait of the Picene culture provides new insights into the Italic Iron Age and the legacy of the Roman Empire in Central Italy.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03430-4
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- Article
Considerations in the search for epistasis.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03427-z
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- Article
VI-VS: calibrated identification of feature dependencies in single-cell multiomics.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03419-z
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- Article
TDFPS-Designer: an efficient toolkit for barcode design and selection in nanopore sequencing.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03423-3
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- Article
CaClust: linking genotype to transcriptional heterogeneity of follicular lymphoma using BCR and exomic variants.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03417-1
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- Article
Measuring, visualizing, and diagnosing reference bias with biastools.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03240-8
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- Article
TDFPS-Designer: an efficient toolkit for barcode design and selection in nanopore sequencing.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03423-3
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- Publication type:
- Article
Benchmarking and building DNA binding affinity models using allele-specific and allele-agnostic transcription factor binding data.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03424-2
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- Article
Neglecting the impact of normalization in semi-synthetic RNA-seq data simulations generates artificial false positives.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03231-9
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- Publication type:
- Article
Response to "Neglecting normalization impact in semi-synthetic RNA-seq data simulation generates artificial false positives" and "Winsorization greatly reduces false positives by popular differential expression methods when analyzing human population samples"
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03232-8
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- Article
Winsorization greatly reduces false positives by popular differential expression methods when analyzing human population samples.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03230-w
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- Publication type:
- Article
scCTS: identifying the cell type-specific marker genes from population-level single-cell RNA-seq.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03410-8
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- Publication type:
- Article
Spatiotemporal modeling reveals high-resolution invasion states in glioblastoma.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03407-3
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- Article
pan-Draft: automated reconstruction of species-representative metabolic models from multiple genomes.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03425-1
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- Article
STASCAN deciphers fine-resolution cell distribution maps in spatial transcriptomics by deep learning.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03421-5
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- Publication type:
- Article
A comprehensive study of genetic regulation and disease associations of plasma circulatory microRNAs using population-level data.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03420-6
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- Publication type:
- Article
Scalable identification of lineage-specific gene regulatory networks from metacells with NetID.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03418-0
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- Article
Plant conservation in the age of genome editing: opportunities and challenges.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03399-0
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- Publication type:
- Article
Mapping lineage-traced cells across time points with moslin.
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- Genome Biology, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s13059-024-03422-4
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- Publication type:
- Article