Works matching IS 14747596 AND DT 2023
Results: 289
Phenome-wide analyses identify an association between the parent-of-origin effects dependent methylome and the rate of aging in humans.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02953-6
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- Article
Modeling group heteroscedasticity in single-cell RNA-seq pseudo-bulk data.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02949-2
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Publisher Correction: Modeling group heteroscedasticity in single-cell RNA-seq pseudo-bulk data.
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- 2023
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- Correction Notice
The VGNC: expanding standardized vertebrate gene nomenclature.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02957-2
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- Article
Decoding enhancer complexity with machine learning and high-throughput discovery.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02955-4
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Cross-phyla protein annotation by structural prediction and alignment.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02942-9
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Genetic basis of geographical differentiation and breeding selection for wheat plant architecture traits.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02932-x
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Genome-wide association analysis reveals a novel pathway mediated by a dual-TIR domain protein for pathogen resistance in cotton.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02950-9
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- Article
Correcting gradient-based interpretations of deep neural networks for genomics.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02956-3
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- Article
High-throughput deep learning variant effect prediction with Sequence UNET.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02948-3
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- Article
Hybrid allele-specific ChIP-seq analysis identifies variation in brassinosteroid-responsive transcription factor binding linked to traits in maize.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02909-w
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EvoAug: improving generalization and interpretability of genomic deep neural networks with evolution-inspired data augmentations.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02941-w
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- Article
m<sup>6</sup>A readers ECT2/ECT3/ECT4 enhance mRNA stability through direct recruitment of the poly(A) binding proteins in Arabidopsis.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02947-4
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- Article
Author Correction: DNA methylation entropy as a measure of stem cell replication and aging.
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- 2023
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- Correction Notice
Caloric restriction remodels the hepatic chromatin landscape and bile acid metabolism by modulating the gut microbiota.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02938-5
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- Article
Boosting genome editing efficiency in human cells and plants with novel LbCas12a variants.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02929-6
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- Article
SNV-FEAST: microbial source tracking with single nucleotide variants.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02927-8
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- Article
DREAMS: deep read-level error model for sequencing data applied to low-frequency variant calling and circulating tumor DNA detection.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02920-1
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- Article
Inversion polymorphism in a complete human genome assembly.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02919-8
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- Article
A metabolic perspective of selection for fruit quality related to apple domestication and improvement.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02945-6
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MORC proteins regulate transcription factor binding by mediating chromatin compaction in active chromatin regions.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02939-4
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- Article
A comprehensive map of human glucokinase variant activity.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02935-8
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Publisher Correction: Raymond Gosling: the man who crystallized genes.
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- 2023
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- Correction Notice
Identifying yield-related genes in maize based on ear trait plasticity.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02937-6
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- Article
Combining different CRISPR nucleases for simultaneous knock-in and base editing prevents translocations in multiplex-edited CAR T cells.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02928-7
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- Article
A desert lncRNA HIDEN regulates human endoderm differentiation via interacting with IMP1 and stabilizing FZD5 mRNA.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02925-w
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- Article
Transformation of alignment files improves performance of variant callers for long-read RNA sequencing data.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02923-y
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Publisher Correction: FIPRESCI: droplet microfluidics based combinatorial indexing for massive-scale 5′-end single-cell RNA sequencing.
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- 2023
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- Correction Notice
Author Correction: mbDenoise: microbiome data denoising using zero-inflated probabilistic principal components analysis.
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- 2023
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- Correction Notice
Consequences and opportunities arising due to sparser single-cell RNA-seq datasets.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02933-w
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- Article
YY1 lactylation in microglia promotes angiogenesis through transcription activation-mediated upregulation of FGF2.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02931-y
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- Article
CasKAS: direct profiling of genome-wide dCas9 and Cas9 specificity using ssDNA mapping.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02930-z
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satmut_utils: a simulation and variant calling package for multiplexed assays of variant effect.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02922-z
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- Article
pycoMeth: a toolbox for differential methylation testing from Nanopore methylation calls.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02917-w
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- Article
PAUSE: principled feature attribution for unsupervised gene expression analysis.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02901-4
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- Article
The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02915-y
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- Article
Identification of genetic variants that impact gene co-expression relationships using large-scale single-cell data.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02897-x
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Metabolic independence drives gut microbial colonization and resilience in health and disease.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02924-x
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DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using nanopore direct RNA sequencing.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02921-0
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JBrowse 2: a modular genome browser with views of synteny and structural variation.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02914-z
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Improved analysis of (e)CLIP data with RCRUNCH yields a compendium of RNA-binding protein binding sites and motifs.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02913-0
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GBC: a parallel toolkit based on highly addressable byte-encoding blocks for extremely large-scale genotypes of species.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02906-z
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- Article
Large-scale genome sequencing redefines the genetic footprints of high-altitude adaptation in Tibetans.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02912-1
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Comprehensive benchmark and architectural analysis of deep learning models for nanopore sequencing basecalling.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02903-2
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- Article
PhyloMed: a phylogeny-based test of mediation effect in microbiome.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02902-3
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- Article
Reading and writing of mRNA m<sup>6</sup>A modification orchestrate maternal-to-zygotic transition in mice.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02918-9
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Flexible and efficient handling of nanopore sequencing signal data with slow5tools.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02910-3
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- Article
Identification of cell barcodes from long-read single-cell RNA-seq with BLAZE.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02907-y
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- Article
Large-scale analysis of de novo mutations identifies risk genes for female infertility characterized by oocyte and early embryo defects.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02894-0
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- Publication type:
- Article
FIPRESCI: droplet microfluidics based combinatorial indexing for massive-scale 5′-end single-cell RNA sequencing.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02893-1
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- Article