Works matching IS 14747596 AND DT 2018 AND VI 19 AND IP 1

Results: 184

N<sup>6</sup>-methyldeoxyadenosine directs nucleosome positioning in Tetrahymena DNA.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1573-3
By:
- Luo, Guan-Zheng;
- Hao, Ziyang;
- Luo, Liangzhi;
- Shen, Mingren;
- Sparvoli, Daniela;
- Zheng, Yuqing;
- Zhang, Zijie;
- Weng, Xiaocheng;
- Chen, Kai;
- Cui, Qiang;
- Turkewitz, Aaron P.;
- He, Chuan
Publication type:
Article
GRIPT: a novel case-control analysis method for Mendelian disease gene discovery.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1579-x
By:
- Wang, Jun;
- Zhao, Li;
- Wang, Xia;
- Chen, Yong;
- Xu, Mingchu;
- Soens, Zachry T.;
- Ge, Zhongqi;
- Wang, Peter Ronghan;
- Wang, Fei;
- Chen, Rui
Publication type:
Article
Transparent peer review trial: the results.
Published in:
2018
By:
- Cosgrove, Andrew;
- Cheifet, Barbara
Publication type:
Editorial
The bird's-eye view on chromosome evolution.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1585-z
By:
- Zhang, Guojie
Publication type:
Article
Livestock 2.0 – genome editing for fitter, healthier, and more productive farmed animals.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1583-1
By:
- Tait-Burkard, Christine;
- Doeschl-Wilson, Andrea;
- McGrew, Mike J.;
- Archibald, Alan L.;
- Sang, Helen M.;
- Houston, Ross D.;
- Whitelaw, C. Bruce;
- Watson, Mick
Publication type:
Article
RNA G-quadruplexes at upstream open reading frames cause DHX36- and DHX9-dependent translation of human mRNAs.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s13059-018-1602-2
By:
- Murat, Pierre;
- Marsico, Giovanni;
- Herdy, Barbara;
- Ghanbarian, Avazeh;
- Portella, Guillem;
- Balasubramanian, Shankar
Publication type:
Article
Lifestyle modifications: coordinating the tRNA epitranscriptome with codon bias to adapt translation during stress responses.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1611-1
By:
- Chan, Cheryl;
- Pham, Phuong;
- Dedon, Peter C.;
- Begley, Thomas J.
Publication type:
Article
SCOPE-Seq: a scalable technology for linking live cell imaging and single-cell RNA sequencing.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1607-x
By:
- Yuan, Jinzhou;
- Sheng, Jenny;
- Sims, Peter A.
Publication type:
Article
Illuminating the genome-wide activity of genome editors for safe and effective therapeutics.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1610-2
By:
- Cheng, Yong;
- Tsai, Shengdar Q.
Publication type:
Article
Making supplemental information more accessible.
Published in:
2018
By:
- Cheifet, Barbara
Publication type:
Editorial
Predicting age from the transcriptome of human dermal fibroblasts.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s13059-018-1599-6
By:
- Fleischer, Jason G.;
- Schulte, Roberta;
- Tsai, Hsiao H.;
- Tyagi, Swati;
- Ibarra, Arkaitz;
- Shokhirev, Maxim N.;
- Huang, Ling;
- Hetzer, Martin W.;
- Navlakha, Saket
Publication type:
Article
Cell Hashing with barcoded antibodies enables multiplexing and doublet detection for single cell genomics.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s13059-018-1603-1
By:
- Stoeckius, Marlon;
- Zheng, Shiwei;
- Houck-Loomis, Brian;
- Hao, Stephanie;
- Yeung, Bertrand Z.;
- Mauck III, William M.;
- Smibert, Peter;
- Satija, Rahul
Publication type:
Article
Exploring the genetic basis of human population differences in DNA methylation and their causal impact on immune gene regulation.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1601-3
By:
- Husquin, Lucas T.;
- Rotival, Maxime;
- Fagny, Maud;
- Quach, Hélène;
- Zidane, Nora;
- McEwen, Lisa M.;
- MacIsaac, Julia L.;
- Kobor, Michael S.;
- Aschard, Hugues;
- Patin, Etienne;
- Quintana-Murci, Lluis
Publication type:
Article
We simply cannot go on being so vague about 'function'.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1600-4
By:
- Doolittle, W. Ford
Publication type:
Article
FORGe: prioritizing variants for graph genomes.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1595-x
By:
- Pritt, Jacob;
- Chen, Nae-Chyun;
- Langmead, Ben
Publication type:
Article
Analysis of 3D genomic interactions identifies candidate host genes that transposable elements potentially regulate.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s13059-018-1598-7
By:
- Raviram, Ramya;
- Rocha, Pedro P.;
- Luo, Vincent M.;
- Swanzey, Emily;
- Miraldi, Emily R.;
- Chuong, Edward B.;
- Feschotte, Cédric;
- Bonneau, Richard;
- Skok, Jane A.
Publication type:
Article
A novel FLI1 exonic circular RNA promotes metastasis in breast cancer by coordinately regulating TET1 and DNMT1.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1594-y
By:
- Chen, Naifei;
- Zhao, Gang;
- Yan, Xu;
- Lv, Zheng;
- Yin, Hongmei;
- Zhang, Shilin;
- Song, Wei;
- Li, Xueli;
- Li, Lingyu;
- Du, Zhonghua;
- Jia, Lin;
- Zhou, Lei;
- Li, Wei;
- Hoffman, Andrew R.;
- Hu, Ji-Fan;
- Cui, Jiuwei
Publication type:
Article
Enhancers in the Peril lincRNA locus regulate distant but not local genes.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1589-8
By:
- Groff, Abigail F.;
- Barutcu, A. Rasim;
- Lewandowski, Jordan P.;
- Rinn, John L.
Publication type:
Article
Comparison of computational methods for the identification of topologically associating domains.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1596-9
By:
- Zufferey, Marie;
- Tavernari, Daniele;
- Oricchio, Elisa;
- Ciriello, Giovanni
Publication type:
Article
Genomic landscape of oxidative DNA damage and repair reveals regioselective protection from mutagenesis.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1582-2
By:
- Poetsch, Anna R.;
- Boulton, Simon J.;
- Luscombe, Nicholas M.
Publication type:
Article
NmeCas9 is an intrinsically high-fidelity genome-editing platform.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1591-1
By:
- Amrani, Nadia;
- Gao, Xin D.;
- Liu, Pengpeng;
- Edraki, Alireza;
- Mir, Aamir;
- Ibraheim, Raed;
- Gupta, Ankit;
- Sasaki, Kanae E.;
- Wu, Tong;
- Donohoue, Paul D.;
- Settle, Alexander H.;
- Lied, Alexandra M.;
- McGovern, Kyle;
- Fuller, Chris K.;
- Cameron, Peter;
- Fazzio, Thomas G.;
- Zhu, Lihua Julie;
- Wolfe, Scot A.;
- Sontheimer, Erik J.
Publication type:
Article
miRTrace reveals the organismal origins of microRNA sequencing data.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1588-9
By:
- Kang, Wenjing;
- Eldfjell, Yrin;
- Fromm, Bastian;
- Estivill, Xavier;
- Biryukova, Inna;
- Friedländer, Marc R.
Publication type:
Article
Downregulation of RdDM during strawberry fruit ripening.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1587-x
By:
- Cheng, Jingfei;
- Niu, Qingfeng;
- Zhang, Bo;
- Chen, Kunsong;
- Yang, Ruihua;
- Zhu, Jian-Kang;
- Zhang, Yijing;
- Lang, Zhaobo
Publication type:
Article
Understanding tumor ecosystems by single-cell sequencing: promises and limitations.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1593-z
By:
- Ren, Xianwen;
- Kang, Boxi;
- Zhang, Zemin
Publication type:
Article
Applications and potential of genome editing in crop improvement.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1586-y
By:
- Zhang, Yi;
- Massel, Karen;
- Godwin, Ian D.;
- Gao, Caixia
Publication type:
Article
A new look at an old question: when did the second whole genome duplication occur in vertebrate evolution?
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1592-0
By:
- Holland, Linda Z.;
- Ocampo Daza, Daniel
Publication type:
Article
CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1590-2
By:
- Pertea, Mihaela;
- Shumate, Alaina;
- Pertea, Geo;
- Varabyou, Ales;
- Breitwieser, Florian P.;
- Chang, Yu-Chi;
- Madugundu, Anil K.;
- Pandey, Akhilesh;
- Salzberg, Steven L.
Publication type:
Article
CODEX2: full-spectrum copy number variation detection by high-throughput DNA sequencing.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1578-y
By:
- Jiang, Yuchao;
- Wang, Rujin;
- Urrutia, Eugene;
- Anastopoulos, Ioannis N.;
- Nathanson, Katherine L.;
- Zhang, Nancy R.
Publication type:
Article
Linking single-cell measurements of mass, growth rate, and gene expression.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1576-0
By:
- Kimmerling, Robert J.;
- Prakadan, Sanjay M.;
- Gupta, Alejandro J.;
- Calistri, Nicholas L.;
- Stevens, Mark M.;
- Olcum, Selim;
- Cermak, Nathan;
- Drake, Riley S.;
- Pelton, Kristine;
- De Smet, Frederik;
- Ligon, Keith L.;
- Shalek, Alex K.;
- Manalis, Scott R.
Publication type:
Article
Ten things you should know about transposable elements.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1577-z
By:
- Bourque, Guillaume;
- Burns, Kathleen H.;
- Gehring, Mary;
- Gorbunova, Vera;
- Seluanov, Andrei;
- Hammell, Molly;
- Imbeault, Michaël;
- Izsvák, Zsuzsanna;
- Levin, Henry L.;
- Macfarlan, Todd S.;
- Mager, Dixie L.;
- Feschotte, Cédric
Publication type:
Article
Pooled extracellular receptor-ligand interaction screening using CRISPR activation.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1581-3
By:
- Chong, Zheng-Shan;
- Ohnishi, Shuhei;
- Yusa, Kosuke;
- Wright, Gavin J.
Publication type:
Article
KrakenUniq: confident and fast metagenomics classification using unique k-mer counts.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s13059-018-1568-0
By:
- Breitwieser, F. P.;
- Baker, D. N.;
- Salzberg, S. L.
Publication type:
Article
Conferring DNA virus resistance with high specificity in plants using virus-inducible genome-editing system.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s13059-018-1580-4
By:
- Xiang Ji;
- Xiaomin Si;
- Yi Zhang;
- Huawei Zhang;
- Feng Zhang;
- Caixia Gao
Publication type:
Article
Genomes reveal marked differences in the adaptive evolution between orangutan species.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1562-6
By:
- Mattle-Greminger, Maja P.;
- Bilgin Sonay, Tugce;
- Nater, Alexander;
- Pybus, Marc;
- Desai, Tariq;
- de Valles, Guillem;
- Casals, Ferran;
- Scally, Aylwyn;
- Bertranpetit, Jaume;
- Marques-Bonet, Tomas;
- van Schaik, Carel P.;
- Anisimova, Maria;
- Krützen, Michael
Publication type:
Article
Genetic disease risks can be misestimated across global populations.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1561-7
By:
- Kim, Michelle S.;
- Patel, Kane P.;
- Teng, Andrew K.;
- Berens, Ali J.;
- Lachance, Joseph
Publication type:
Article
VIPER: variability-preserving imputation for accurate gene expression recovery in single-cell RNA sequencing studies.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1575-1
By:
- Chen, Mengjie;
- Zhou, Xiang
Publication type:
Article
LncRNAs in polyploid cotton interspecific hybrids are derived from transposon neofunctionalization.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1574-2
By:
- Zhao, Ting;
- Tao, Xiaoyuan;
- Feng, Shouli;
- Wang, Luyao;
- Hong, Hui;
- Ma, Wei;
- Shang, Guandong;
- Guo, Shisong;
- He, Yuxin;
- Zhou, Baoliang;
- Guan, Xueying
Publication type:
Article
Expression quantitative trait loci in the developing human brain and their enrichment in neuropsychiatric disorders.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1567-1
By:
- O'Brien, Heath E.;
- Hannon, Eilis;
- Hill, Matthew J.;
- Toste, Carolina C.;
- Robertson, Matthew J.;
- Morgan, Joanne E.;
- McLaughlin, Gemma;
- Lewis, Cathryn M.;
- Schalkwyk, Leonard C.;
- Hall, Lynsey S.;
- Pardiñas, Antonio F.;
- Owen, Michael J.;
- O'Donovan, Michael C.;
- Mill, Jonathan;
- Bray, Nicholas J.
Publication type:
Article
CRISPR/Cas9 offers a new tool for studying the role of chromatin architecture in disease pathogenesis.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1569-z
By:
- Guo, Xiang;
- Dean, Ann
Publication type:
Article
Live imaging and tracking of genome regions in CRISPR/dCas9 knock-in mice.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1530-1
By:
- Duan, Jinzhi;
- Lu, Guangqing;
- Hong, Yu;
- Hu, Qingtao;
- Mai, Xueying;
- Guo, Jing;
- Si, Xiaofang;
- Wang, Fengchao;
- Zhang, Yu
Publication type:
Article
Simulation-based benchmarking of isoform quantification in single-cell RNA-seq.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1571-5
By:
- Westoby, Jennifer;
- Herrera, Marcela Sjöberg;
- Ferguson-Smith, Anne C.;
- Hemberg, Martin
Publication type:
Article
LaminA/C regulates epigenetic and chromatin architecture changes upon aging of hematopoietic stem cells.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1557-3
By:
- Grigoryan, Ani;
- Guidi, Novella;
- Senger, Katharina;
- Liehr, Thomas;
- Soller, Karin;
- Marka, Gina;
- Vollmer, Angelika;
- Markaki, Yolanda;
- Leonhardt, Heinrich;
- Buske, Christian;
- Lipka, Daniel B.;
- Plass, Christoph;
- Zheng, Yi;
- Mulaw, Medhanie A.;
- Geiger, Hartmut;
- Florian, Maria Carolina
Publication type:
Article
Genome editing: from tools to biological insights.
Published in:
2018
By:
- Yao, Yixin
Publication type:
Editorial
DNA methylation and de-methylation using hybrid site-targeting proteins.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1566-2
By:
- Lei, Yong;
- Huang, Yung-Hsin;
- Goodell, Margaret A.
Publication type:
Article
Recurrent mutations at estrogen receptor binding sites alter chromatin topology and distal gene expression in breast cancer.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1572-4
By:
- Yang, Jiekun;
- Wei, Xiaolong;
- Tufan, Turan;
- Kuscu, Cem;
- Unlu, Hayrunnisa;
- Farooq, Saadia;
- Demirtas, Elif;
- Paschal, Bryce M.;
- Adli, Mazhar
Publication type:
Article
Understanding and repurposing CRISPR-mediated alternative splicing.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1565-3
By:
- Smith, Jordan L.;
- Mou, Haiwei;
- Xue, Wen
Publication type:
Article
Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1539-5
By:
- Lee, Anna Y.;
- Ewing, Adam D.;
- Ellrott, Kyle;
- Hu, Yin;
- Houlahan, Kathleen E.;
- Bare, J. Christopher;
- Espiritu, Shadrielle Melijah G.;
- Huang, Vincent;
- Dang, Kristen;
- Chong, Zechen;
- Caloian, Cristian;
- Yamaguchi, Takafumi N.;
- Kellen, Michael R.;
- Chen, Ken;
- Norman, Thea C.;
- Friend, Stephen H.;
- Guinney, Justin;
- Stolovitzky, Gustavo;
- Haussler, David;
- Margolin, Adam A.
Publication type:
Article
Comparative genomics reveals the distinct evolutionary trajectories of the robust and complex coral lineages.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1552-8
By:
- Ying, Hua;
- Cooke, Ira;
- Sprungala, Susanne;
- Wang, Weiwen;
- Hayward, David C.;
- Tang, Yurong;
- Huttley, Gavin;
- Ball, Eldon E.;
- Forêt, Sylvain;
- Miller, David J.
Publication type:
Article
omniCLIP: probabilistic identification of protein-RNA interactions from CLIP-seq data.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1521-2
By:
- Drewe-Boss, Philipp;
- Wessels, Hans-Hermann;
- Ohler, Uwe
Publication type:
Article
Phytophthora methylomes are modulated by 6mA methyltransferases and associated with adaptive genome regions.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1564-4
By:
- Chen, Han;
- Shu, Haidong;
- Wang, Liyuan;
- Zhang, Fan;
- Li, Xi;
- Ochola, Sylvans Ochieng;
- Mao, Fei;
- Ma, Hongyu;
- Ye, Wenwu;
- Gu, Tingting;
- Jiang, Lubin;
- Wu, Yufeng;
- Wang, Yuanchao;
- Kamoun, Sophien;
- Dong, Suomeng
Publication type:
Article