Works matching IS 14747596 AND DT 2018 AND VI 19

Results: 229

RNA G-quadruplexes at upstream open reading frames cause DHX36- and DHX9-dependent translation of human mRNAs.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s13059-018-1602-2

By:

Murat, Pierre;
Marsico, Giovanni;
Herdy, Barbara;
Ghanbarian, Avazeh;
Portella, Guillem;
Balasubramanian, Shankar

Publication type:

Article

Lifestyle modifications: coordinating the tRNA epitranscriptome with codon bias to adapt translation during stress responses.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1611-1

By:

Chan, Cheryl;
Pham, Phuong;
Dedon, Peter C.;
Begley, Thomas J.

Publication type:

Article

SCOPE-Seq: a scalable technology for linking live cell imaging and single-cell RNA sequencing.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1607-x

By:

Yuan, Jinzhou;
Sheng, Jenny;
Sims, Peter A.

Publication type:

Article

Illuminating the genome-wide activity of genome editors for safe and effective therapeutics.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1610-2

By:

Cheng, Yong;
Tsai, Shengdar Q.

Publication type:

Article

Making supplemental information more accessible.

Published in:

2018

By:

Cheifet, Barbara

Publication type:

Editorial

Predicting age from the transcriptome of human dermal fibroblasts.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s13059-018-1599-6

By:

Fleischer, Jason G.;
Schulte, Roberta;
Tsai, Hsiao H.;
Tyagi, Swati;
Ibarra, Arkaitz;
Shokhirev, Maxim N.;
Huang, Ling;
Hetzer, Martin W.;
Navlakha, Saket

Publication type:

Article

Cell Hashing with barcoded antibodies enables multiplexing and doublet detection for single cell genomics.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s13059-018-1603-1

By:

Stoeckius, Marlon;
Zheng, Shiwei;
Houck-Loomis, Brian;
Hao, Stephanie;
Yeung, Bertrand Z.;
Mauck III, William M.;
Smibert, Peter;
Satija, Rahul

Publication type:

Article

Exploring the genetic basis of human population differences in DNA methylation and their causal impact on immune gene regulation.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1601-3

By:

Husquin, Lucas T.;
Rotival, Maxime;
Fagny, Maud;
Quach, Hélène;
Zidane, Nora;
McEwen, Lisa M.;
MacIsaac, Julia L.;
Kobor, Michael S.;
Aschard, Hugues;
Patin, Etienne;
Quintana-Murci, Lluis

Publication type:

Article

We simply cannot go on being so vague about 'function'.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1600-4

By:

Doolittle, W. Ford

Publication type:

Article

FORGe: prioritizing variants for graph genomes.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1595-x

By:

Pritt, Jacob;
Chen, Nae-Chyun;
Langmead, Ben

Publication type:

Article

Analysis of 3D genomic interactions identifies candidate host genes that transposable elements potentially regulate.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s13059-018-1598-7

By:

Raviram, Ramya;
Rocha, Pedro P.;
Luo, Vincent M.;
Swanzey, Emily;
Miraldi, Emily R.;
Chuong, Edward B.;
Feschotte, Cédric;
Bonneau, Richard;
Skok, Jane A.

Publication type:

Article

A novel FLI1 exonic circular RNA promotes metastasis in breast cancer by coordinately regulating TET1 and DNMT1.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1594-y

By:

Chen, Naifei;
Zhao, Gang;
Yan, Xu;
Lv, Zheng;
Yin, Hongmei;
Zhang, Shilin;
Song, Wei;
Li, Xueli;
Li, Lingyu;
Du, Zhonghua;
Jia, Lin;
Zhou, Lei;
Li, Wei;
Hoffman, Andrew R.;
Hu, Ji-Fan;
Cui, Jiuwei

Publication type:

Article

Enhancers in the Peril lincRNA locus regulate distant but not local genes.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1589-8

By:

Groff, Abigail F.;
Barutcu, A. Rasim;
Lewandowski, Jordan P.;
Rinn, John L.

Publication type:

Article

Comparison of computational methods for the identification of topologically associating domains.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1596-9

By:

Zufferey, Marie;
Tavernari, Daniele;
Oricchio, Elisa;
Ciriello, Giovanni

Publication type:

Article

Genomic landscape of oxidative DNA damage and repair reveals regioselective protection from mutagenesis.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1582-2

By:

Poetsch, Anna R.;
Boulton, Simon J.;
Luscombe, Nicholas M.

Publication type:

Article

NmeCas9 is an intrinsically high-fidelity genome-editing platform.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1591-1

By:

Amrani, Nadia;
Gao, Xin D.;
Liu, Pengpeng;
Edraki, Alireza;
Mir, Aamir;
Ibraheim, Raed;
Gupta, Ankit;
Sasaki, Kanae E.;
Wu, Tong;
Donohoue, Paul D.;
Settle, Alexander H.;
Lied, Alexandra M.;
McGovern, Kyle;
Fuller, Chris K.;
Cameron, Peter;
Fazzio, Thomas G.;
Zhu, Lihua Julie;
Wolfe, Scot A.;
Sontheimer, Erik J.

Publication type:

Article

miRTrace reveals the organismal origins of microRNA sequencing data.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1588-9

By:

Kang, Wenjing;
Eldfjell, Yrin;
Fromm, Bastian;
Estivill, Xavier;
Biryukova, Inna;
Friedländer, Marc R.

Publication type:

Article

Downregulation of RdDM during strawberry fruit ripening.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1587-x

By:

Cheng, Jingfei;
Niu, Qingfeng;
Zhang, Bo;
Chen, Kunsong;
Yang, Ruihua;
Zhu, Jian-Kang;
Zhang, Yijing;
Lang, Zhaobo

Publication type:

Article

Understanding tumor ecosystems by single-cell sequencing: promises and limitations.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1593-z

By:

Ren, Xianwen;
Kang, Boxi;
Zhang, Zemin

Publication type:

Article

Applications and potential of genome editing in crop improvement.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1586-y

By:

Zhang, Yi;
Massel, Karen;
Godwin, Ian D.;
Gao, Caixia

Publication type:

Article

A new look at an old question: when did the second whole genome duplication occur in vertebrate evolution?

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1592-0

By:

Holland, Linda Z.;
Ocampo Daza, Daniel

Publication type:

Article

CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1590-2

By:

Pertea, Mihaela;
Shumate, Alaina;
Pertea, Geo;
Varabyou, Ales;
Breitwieser, Florian P.;
Chang, Yu-Chi;
Madugundu, Anil K.;
Pandey, Akhilesh;
Salzberg, Steven L.

Publication type:

Article

Transparent peer review trial: the results.

Published in:

2018

By:

Cosgrove, Andrew;
Cheifet, Barbara

Publication type:

Editorial

Linking single-cell measurements of mass, growth rate, and gene expression.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1576-0

By:

Kimmerling, Robert J.;
Prakadan, Sanjay M.;
Gupta, Alejandro J.;
Calistri, Nicholas L.;
Stevens, Mark M.;
Olcum, Selim;
Cermak, Nathan;
Drake, Riley S.;
Pelton, Kristine;
De Smet, Frederik;
Ligon, Keith L.;
Shalek, Alex K.;
Manalis, Scott R.

Publication type:

Article

Livestock 2.0 – genome editing for fitter, healthier, and more productive farmed animals.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1583-1

By:

Tait-Burkard, Christine;
Doeschl-Wilson, Andrea;
McGrew, Mike J.;
Archibald, Alan L.;
Sang, Helen M.;
Houston, Ross D.;
Whitelaw, C. Bruce;
Watson, Mick

Publication type:

Article

Pooled extracellular receptor-ligand interaction screening using CRISPR activation.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1581-3

By:

Chong, Zheng-Shan;
Ohnishi, Shuhei;
Yusa, Kosuke;
Wright, Gavin J.

Publication type:

Article

GRIPT: a novel case-control analysis method for Mendelian disease gene discovery.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1579-x

By:

Wang, Jun;
Zhao, Li;
Wang, Xia;
Chen, Yong;
Xu, Mingchu;
Soens, Zachry T.;
Ge, Zhongqi;
Wang, Peter Ronghan;
Wang, Fei;
Chen, Rui

Publication type:

Article

CODEX2: full-spectrum copy number variation detection by high-throughput DNA sequencing.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1578-y

By:

Jiang, Yuchao;
Wang, Rujin;
Urrutia, Eugene;
Anastopoulos, Ioannis N.;
Nathanson, Katherine L.;
Zhang, Nancy R.

Publication type:

Article

The bird's-eye view on chromosome evolution.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1585-z

By:

Zhang, Guojie

Publication type:

Article

Ten things you should know about transposable elements.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1577-z

By:

Bourque, Guillaume;
Burns, Kathleen H.;
Gehring, Mary;
Gorbunova, Vera;
Seluanov, Andrei;
Hammell, Molly;
Imbeault, Michaël;
Izsvák, Zsuzsanna;
Levin, Henry L.;
Macfarlan, Todd S.;
Mager, Dixie L.;
Feschotte, Cédric

Publication type:

Article

N<sup>6</sup>-methyldeoxyadenosine directs nucleosome positioning in Tetrahymena DNA.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1573-3

By:

Luo, Guan-Zheng;
Hao, Ziyang;
Luo, Liangzhi;
Shen, Mingren;
Sparvoli, Daniela;
Zheng, Yuqing;
Zhang, Zijie;
Weng, Xiaocheng;
Chen, Kai;
Cui, Qiang;
Turkewitz, Aaron P.;
He, Chuan

Publication type:

Article

KrakenUniq: confident and fast metagenomics classification using unique k-mer counts.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s13059-018-1568-0

By:

Breitwieser, F. P.;
Baker, D. N.;
Salzberg, S. L.

Publication type:

Article

Conferring DNA virus resistance with high specificity in plants using virus-inducible genome-editing system.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s13059-018-1580-4

By:

Xiang Ji;
Xiaomin Si;
Yi Zhang;
Huawei Zhang;
Feng Zhang;
Caixia Gao

Publication type:

Article

Live imaging and tracking of genome regions in CRISPR/dCas9 knock-in mice.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1530-1

By:

Duan, Jinzhi;
Lu, Guangqing;
Hong, Yu;
Hu, Qingtao;
Mai, Xueying;
Guo, Jing;
Si, Xiaofang;
Wang, Fengchao;
Zhang, Yu

Publication type:

Article

Genetic disease risks can be misestimated across global populations.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1561-7

By:

Kim, Michelle S.;
Patel, Kane P.;
Teng, Andrew K.;
Berens, Ali J.;
Lachance, Joseph

Publication type:

Article

VIPER: variability-preserving imputation for accurate gene expression recovery in single-cell RNA sequencing studies.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1575-1

By:

Chen, Mengjie;
Zhou, Xiang

Publication type:

Article

LncRNAs in polyploid cotton interspecific hybrids are derived from transposon neofunctionalization.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1574-2

By:

Zhao, Ting;
Tao, Xiaoyuan;
Feng, Shouli;
Wang, Luyao;
Hong, Hui;
Ma, Wei;
Shang, Guandong;
Guo, Shisong;
He, Yuxin;
Zhou, Baoliang;
Guan, Xueying

Publication type:

Article

Expression quantitative trait loci in the developing human brain and their enrichment in neuropsychiatric disorders.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1567-1

By:

O'Brien, Heath E.;
Hannon, Eilis;
Hill, Matthew J.;
Toste, Carolina C.;
Robertson, Matthew J.;
Morgan, Joanne E.;
McLaughlin, Gemma;
Lewis, Cathryn M.;
Schalkwyk, Leonard C.;
Hall, Lynsey S.;
Pardiñas, Antonio F.;
Owen, Michael J.;
O'Donovan, Michael C.;
Mill, Jonathan;
Bray, Nicholas J.

Publication type:

Article

Genomes reveal marked differences in the adaptive evolution between orangutan species.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1562-6

By:

Mattle-Greminger, Maja P.;
Bilgin Sonay, Tugce;
Nater, Alexander;
Pybus, Marc;
Desai, Tariq;
de Valles, Guillem;
Casals, Ferran;
Scally, Aylwyn;
Bertranpetit, Jaume;
Marques-Bonet, Tomas;
van Schaik, Carel P.;
Anisimova, Maria;
Krützen, Michael

Publication type:

Article

Recurrent mutations at estrogen receptor binding sites alter chromatin topology and distal gene expression in breast cancer.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1572-4

By:

Yang, Jiekun;
Wei, Xiaolong;
Tufan, Turan;
Kuscu, Cem;
Unlu, Hayrunnisa;
Farooq, Saadia;
Demirtas, Elif;
Paschal, Bryce M.;
Adli, Mazhar

Publication type:

Article

Simulation-based benchmarking of isoform quantification in single-cell RNA-seq.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1571-5

By:

Westoby, Jennifer;
Herrera, Marcela Sjöberg;
Ferguson-Smith, Anne C.;
Hemberg, Martin

Publication type:

Article

LaminA/C regulates epigenetic and chromatin architecture changes upon aging of hematopoietic stem cells.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1557-3

By:

Grigoryan, Ani;
Guidi, Novella;
Senger, Katharina;
Liehr, Thomas;
Soller, Karin;
Marka, Gina;
Vollmer, Angelika;
Markaki, Yolanda;
Leonhardt, Heinrich;
Buske, Christian;
Lipka, Daniel B.;
Plass, Christoph;
Zheng, Yi;
Mulaw, Medhanie A.;
Geiger, Hartmut;
Florian, Maria Carolina

Publication type:

Article

Genome editing: from tools to biological insights.

Published in:

2018

By:

Yao, Yixin

Publication type:

Editorial

CRISPR/Cas9 offers a new tool for studying the role of chromatin architecture in disease pathogenesis.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1569-z

By:

Guo, Xiang;
Dean, Ann

Publication type:

Article

DNA methylation and de-methylation using hybrid site-targeting proteins.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1566-2

By:

Lei, Yong;
Huang, Yung-Hsin;
Goodell, Margaret A.

Publication type:

Article

Understanding and repurposing CRISPR-mediated alternative splicing.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1565-3

By:

Smith, Jordan L.;
Mou, Haiwei;
Xue, Wen

Publication type:

Article

Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1539-5

By:

Lee, Anna Y.;
Ewing, Adam D.;
Ellrott, Kyle;
Hu, Yin;
Houlahan, Kathleen E.;
Bare, J. Christopher;
Espiritu, Shadrielle Melijah G.;
Huang, Vincent;
Dang, Kristen;
Chong, Zechen;
Caloian, Cristian;
Yamaguchi, Takafumi N.;
Kellen, Michael R.;
Chen, Ken;
Norman, Thea C.;
Friend, Stephen H.;
Guinney, Justin;
Stolovitzky, Gustavo;
Haussler, David;
Margolin, Adam A.

Publication type:

Article

Comparative genomics reveals the distinct evolutionary trajectories of the robust and complex coral lineages.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1552-8

By:

Ying, Hua;
Cooke, Ira;
Sprungala, Susanne;
Wang, Weiwen;
Hayward, David C.;
Tang, Yurong;
Huttley, Gavin;
Ball, Eldon E.;
Forêt, Sylvain;
Miller, David J.

Publication type:

Article

omniCLIP: probabilistic identification of protein-RNA interactions from CLIP-seq data.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1521-2

By:

Drewe-Boss, Philipp;
Wessels, Hans-Hermann;
Ohler, Uwe

Publication type:

Article

Phytophthora methylomes are modulated by 6mA methyltransferases and associated with adaptive genome regions.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1564-4

By:

Chen, Han;
Shu, Haidong;
Wang, Liyuan;
Zhang, Fan;
Li, Xi;
Ochola, Sylvans Ochieng;
Mao, Fei;
Ma, Hongyu;
Ye, Wenwu;
Gu, Tingting;
Jiang, Lubin;
Wu, Yufeng;
Wang, Yuanchao;
Kamoun, Sophien;
Dong, Suomeng

Publication type:

Article