Works matching IS 14747596 AND DT 2017 AND VI 18

Results: 245

Bidirectional transcription initiation marks accessible chromatin and is not specific to enhancers.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1379-8

By:

Young, Robert S.;
Kumar, Yatendra;
Bickmore, Wendy A.;
Taylor, Martin S.

Publication type:

Article

Adaptation of Arabidopsis thaliana to the Yangtze River basin.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1378-9

By:

Yu-Pan Zou;
Xing-Hui Hou;
Qiong Wu;
Jia-Fu Chen;
Zi-Wen Li;
Ting-Shen Han;
Xiao-Min Niu;
Li Yang;
Yong-Chao Xu;
Jie Zhang;
Fu-Min Zhang;
Dunyan Tan;
Zhixi Tian;
Hongya Gu;
Ya-Long Guo

Publication type:

Article

DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1372-2

By:

Audoux, Jérôme;
Philippe, Nicolas;
Chikhi, Rayan;
Salson, Mikaël;
Gallopin, Mélina;
Gabriel, Marc;
Le Coz, Jérémy;
Drouineau, Emilie;
Commes, Thérèse;
Gautheret, Daniel

Publication type:

Article

DotAligner: identification and clustering of RNA structure motifs.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1371-3

By:

Smith, Martin A.;
Seemann, Stefan E.;
Xiu Cheng Quek;
Mattick, John S.

Publication type:

Article

PureCLIP: capturing target-specific protein-RNA interaction footprints from single-nucleotide CLIP-seq data.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1364-2

By:

Krakau, Sabrina;
Richard, Hugues;
Marsico, Annalisa

Publication type:

Article

Intergenic disease-associated regions are abundant in novel transcripts.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1363-3

By:

Bartonicek, N.;
Clark, M. B.;
Quek, X. C.;
Torpy, J. R.;
Pritchard, A. L.;
Maag, J. L. V.;
Gloss, B. S.;
Crawford, J.;
Taft, R. J.;
Hayward, N. K.;
Montgomery, G. W.;
Mattick, J. S.;
Mercer, T. R.;
Dinger, M. E.

Publication type:

Article

Single-cell RNA-seq study determines the ontogeny of macrophages in glioblastomas.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1375-z

By:

Chenghang (Chuck) Zong

Publication type:

Article

From forensic epigenetics to forensic epigenomics: broadening DNA investigative intelligence.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1373-1

By:

Vidaki, Athina;
Kayser, Manfred

Publication type:

Article

The oncogenic role of circPVT1 in head and neck squamous cell carcinoma is mediated through the mutant p53/YAP/TEAD transcription-competent complex.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1368-y

By:

Verduci, Lorena;
Ferraiuolo, Maria;
Sacconi, Andrea;
Ganci, Federica;
Vitale, Jlenia;
Colombo, Teresa;
Paci, Paola;
Strano, Sabrina;
Macino, Giuseppe;
Rajewsky, Nikolaus;
Blandino, Giovanni

Publication type:

Article

Systems-epigenomics inference of transcription factor activity implicates aryl-hydrocarbon-receptor inactivation as a key event in lung cancer development.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1366-0

By:

Yuting Chen;
Widschwendter, Martin;
Teschendorff, Andrew E.

Publication type:

Article

Single-cell profiling of human gliomas reveals macrophage ontogeny as a basis for regional differences in macrophage activation in the tumor microenvironment.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1362-4

By:

Müller, Sören;
Kohanbash, Gary;
Liu, S. John;
Alvarado, Beatriz;
Carrera, Diego;
Bhaduri, Aparna;
Watchmaker, Payal B.;
Yagnik, Garima;
Di Lullo, Elizabeth;
Malatesta, Martina;
Amankulor, Nduka M.;
Kriegstein, Arnold R.;
Lim, Daniel A.;
Aghi, Manish;
Okada, Hideho;
Diaz, Aaron

Publication type:

Article

MICRA: an automatic pipeline for fast characterization of microbial genomes from high-throughput sequencing data.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1367-z

By:

Caboche, Ségolène;
Even, Gaël;
Loywick, Alexandre;
Audebert, Christophe;
Hot, David

Publication type:

Article

Stranger in a strange land: the experiences of immigrant researchers.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1370-4

By:

Kamoun, Sophien;
Lozano-Durán, Rosa;
Nakhleh, Luay

Publication type:

Article

Balancing selection and trans-specific polymorphisms.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1365-1

By:

Baosheng Wang;
Mitchell-Olds, Thomas

Publication type:

Article

OMSV enables accurate and comprehensive identification of large structural variations from nanochannel-based single-molecule optical maps.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1356-2

By:

Le Li;
Alden King-Yung Leung;
Tsz-Piu Kwok;
Lai, Yvonne Y. Y.;
Pang, Iris K.;
Grace Tin-Yun Chung;
Mak, Angel C. Y.;
Poon, Annie;
Catherine Chu;
Menglu Li;
Wu, Jacob J. K.;
Lam, Ernest T.;
Han Cao;
Chin Lin;
Sibert, Justin;
Siu-Ming Yiu;
Ming Xiao;
Kwok-Wai Lo;
Pui-Yan Kwok;
Ting-Fung Chan

Publication type:

Article

Experimental design and quantitative analysis of microbial community multiomics.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1359-z

By:

Mallick, Himel;
Siyuan Ma;
Franzosa, Eric A.;
Vatanen, Tommi;
Morgan, Xochitl C.;
Huttenhower, Curtis

Publication type:

Article

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1358-0

By:

Sanfilippo, Piero;
Wen, Jiayu;
Lai, Eric C.

Publication type:

Article

RNAs: dynamic and mutable.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1361-5

By:

Mihaela Zavolan;
Brenton R. Graveley

Publication type:

Article

The 3' end of the story: deciphering combinatorial interactions that control mRNA fate.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1360-6

By:

Jeremy R. Sanford;
Luiz O. F. Penalva

Publication type:

Article

Evaluation of in silico algorithms for use with ACMG/AMP clinical variant interpretation guidelines.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1353-5

By:

Ghosh, Rajarshi;
Oak, Ninad;
Plon, Sharon E.

Publication type:

Article

CRISPR/Cas9-mediated targeted chromosome elimination.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1354-4

By:

Erwei Zuo;
Xiaona Huo;
Xuan Yao;
Xinde Hu;
Yidi Sun;
Jianhang Yin;
Bingbing He;
Xing Wang;
Linyu Shi;
Jie Ping;
Yu Wei;
Wenqin Ying;
Wei Wei;
Wenjia Liu;
Cheng Tang;
Yixue Li;
Jiazhi Hu;
Hui Yang

Publication type:

Article

Computational biologists: moving to the driver's seat.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1357-1

By:

Yanai, Itai;
Chmielnicki, Eva

Publication type:

Article

Functional assessment of human enhancer activities using whole-genome STARRsequencing.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1345-5

By:

Yuwen Liu;
Shan Yu;
Dhiman, Vineet K.;
Brunetti, Tonya;
Eckart, Heather;
White, Kevin P.

Publication type:

Article

Forebrain-specific, conditional silencing of Staufen2 alters synaptic plasticity, learning, and memory in rats.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1350-8

By:

Berger, Stefan M.;
Fernández-Lamo, Iván;
Schönig, Kai;
Moya, Sandra M. Fernández;
Ehses, Janina;
Schieweck, Rico;
Clementi, Stefano;
Enkel, Thomas;
Grothe, Sascha;
von Bohlen und Halbach, Oliver;
Segura, Inmaculada;
Delgado-García, José María;
Gruart, Agnès;
Kiebler, Michael A.;
Bartsch, Dusan

Publication type:

Article

Intron retention enhances gene regulatory complexity in vertebrates.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/S13059-017-1339-3

By:

Schmitz, Ulf;
Pinello, Natalia;
Fangzhi Jia;
Alasmari, Sultan;
Ritchie, William;
Keightley, Maria-Cristina;
Shini, Shaniko;
Lieschke, Graham J.;
Wong, Justin J-L.;
Rasko, John E. J.

Publication type:

Article

Depletion of somatic mutations in splicing-associated sequences in cancer genomes.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1337-5

By:

Hurst, Laurence D.;
Batada, Nizar N.

Publication type:

Article

Rescue of high-specificity Cas9 variants using sgRNAs with matched 5' nucleotides.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1355-3

By:

Sojung Kim;
Taegeun Bae;
Jaewoong Hwang;
Jin-Soo Kim

Publication type:

Article

xCell: digitally portraying the tissue cellular heterogeneity landscape.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1349-1

By:

Aran, Dvir;
Zicheng Hu;
Butte, Atul J.

Publication type:

Article

Long-term balancing selection contributes to adaptation in Arabidopsis and its relatives.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1342-8

By:

Qiong Wu;
Ting-Shen Han;
Xi Chen;
Jia-Fu Chen;
Yu-Pan Zou;
Zi-Wen Li;
Yong-Chao Xu;
Ya-Long

Publication type:

Article

The interplay of demography and selection during maize domestication and expansion.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1346-4

By:

Li Wang;
Beissinger, Timothy M.;
Lorant, Anne;
Ross-Ibarra, Claudia;
Ross-Ibarra, Jeffrey;
Hufford, Matthew B.

Publication type:

Article

Correction to: Quantitative metagenomics reveals unique gut microbiome biomarkers in ankylosing spondylitis.

Published in:: Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1352-6
Publication type:: Article

Early career researchers want Open Science.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1351-7

By:

Farnham, Andrea;
Kurz, Christoph;
Öztürk, Mehmet Ali;
Solbiati, Monica;
Myllyntaus, Oona;
Meekes, Jordy;
Pham, Tra My;
Paz, Clara;
Langiewicz, Magda;
Andrews, Sophie;
Kanninen, Liisa;
Agbemabiese, Chantal;
Guler, Arzu Tugce;
Durieux, Jeffrey;
Jasim, Sarah;
Viessmann, Olivia;
Frattini, Stefano;
Yembergenova, Danagul;
Benito, Carla Marin;
Porte, Marion

Publication type:

Article

f-scLVM: scalable and versatile factor analysis for single-cell RNA-seq.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1334-8

By:

Buettner, Florian;
Pratanwanich, Naruemon;
McCarthy, Davis J.;
Marioni, John C.;
Stegle, Oliver

Publication type:

Article

New reference genome sequences of hot pepper reveal the massive evolution of plant disease-resistance genes by retroduplication.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1341-9

By:

Seungill Kim;
Jieun Park;
Seon-In Yeom;
Yong-Min Kim;
Eunyoung Seo;
Ki-Tae Kim;
Myung-Shin Kim;
Je Min Lee;
Kyeongchae Cheong;
Ho-Sub Shin;
Saet-Byul Kim;
Koeun Han;
Jundae Lee;
Minkyu Park;
Hyun-Ah Lee;
Hye-Young Lee;
Youngsill Lee;
Soohyun Oh;
Joo Hyun Lee;
Eunhye Choi

Publication type:

Article

The multidimensional mechanisms of long noncoding RNA function.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1348-2

By:

Marchese, Francesco P.;
Raimondi, Ivan;
Huarte, Maite

Publication type:

Article

Comparative epigenomics in the Brassicaceae reveals two evolutionarily conserved modes of PRC2-mediated gene regulation.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1333-9

By:

Chica, Claudia;
Louis, Alexandra;
Crollius, Hugues Roest;
Colot, Vincent;
Roudier, François

Publication type:

Article

Adaptation of iCLIP to plants determines the binding landscape of the clockregulated RNA-binding protein AtGRP7.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1332-x

By:

Meyer, Katja;
Tino Köster;
Nolte, Christine;
Weinholdt, Claus;
Lewinski, Martin;
Grosse, Ivo;
Staiger, Dorothee

Publication type:

Article

scDual-Seq: mapping the gene regulatory program of Salmonella infection by host and pathogen single-cell RNA-sequencing.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1340-x

By:

Avital, Gal;
Avraham, Roi;
Fan, Amy;
Hashimshony, Tamar;
Hung, Deborah T.;
Yanai, Itai

Publication type:

Article

Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1329-5

By:

Wyler, Emanuel;
Menegatti, Jennifer;
Franke, Vedran;
Kocks, Christine;
Boltengagen, Anastasiya;
Hennig, Thomas;
Theil, Kathrin;
Rutkowski, Andrzej;
Ferrai, Carmelo;
Baer, Laura;
Kermas, Lisa;
Friedel, Caroline;
Rajewsky, Nikolaus;
Akalin, Altuna;
Dölken, Lars;
Grässer, Friedrich;
Landthaler, Markus

Publication type:

Article

Rewriting the transcriptome: adenosine-to-inosine RNA editing by ADARs.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1347-3

By:

Walkley, Carl R.;
Billy Li, Jin

Publication type:

Article

The fitness cost of mis-splicing is the main determinant of alternative splicing patterns.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1344-6

By:

Saudemont, Baptiste;
Popa, Alexandra;
Parmley, Joanna L.;
Rocher, Vincent;
Blugeon, Corinne;
Necsulea, Anamaria;
Meyer, Eric;
Duret, Laurent

Publication type:

Article

Meiotic crossovers are associated with open chromatin and enriched with Stowaway transposons in potato.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1326-8

By:

Marand, Alexandre P.;
Jansky, Shelley H.;
Hainan Zhao;
Leisner, Courtney P.;
Xiaobiao Zhu;
Zixian Zeng;
Crisovan, Emily;
Newton, Linsey;
Hamernik, Andy J.;
Veilleux, Richard E.;
Buell, C. Robin;
Jiming Jiang

Publication type:

Article

The influence of microRNAs and poly(A) tail length on endogenous mRNA-protein complexes.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1330-z

By:

Rissland, Olivia S.;
Subtelny, Alexander O.;
Miranda Wang;
Lugowski, Andrew;
Nicholson, Beth;
Laver, John D.;
Sidhu, Sachdev S.;
Smibert, Craig A.;
Lipshitz, Howard D.;
Bartel, David P.

Publication type:

Article

Dynamic changes in eIF4F-mRNA interactions revealed by global analyses of environmental stress responses.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1338-4

By:

Costello, Joseph L.;
Kershaw, Christopher J.;
Castelli, Lydia M.;
Talavera, David;
Rowe, William;
Sims, Paul F. G.;
Ashe, Mark P.;
Grant, Christopher M.;
Hubbard, Simon J.;
Pavitt, Graham D.

Publication type:

Article

The human lncRNA LINC-PINT inhibits tumor cell invasion through a highly conserved sequence element.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1331-y

By:

Marín-Béjar, Oskar;
Mas, Aina M.;
González, Jovanna;
Martinez, Dannys;
Athie, Alejandro;
Morales, Xabier;
Galduroz, Mikel;
Raimondi, Ivan;
Grossi, Elena;
Guo, Shuling;
Rouzaut, Ana;
Ulitsky, Igor;
Huarte, Maite

Publication type:

Article

McEnhancer: predicting gene expression via semi-supervised assignment of enhancers to target genes.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1316-x

By:

Hafez, Dina;
Karabacak, Aslihan;
Krueger, Sabrina;
Yih-Chii Hwang;
Li-San Wang;
Zinzen, Robert P.;
Ohler, Uwe

Publication type:

Article

Regulatory remodeling in the allo-tetraploid frog Xenopus laevis.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1335-7

By:

Elurbe, Dei M.;
Paranjpe, Sarita S.;
Georgiou, Georgios;
van Kruijsbergen, Ila;
Bogdanovic, Ozren;
Gibeaux, Romain;
Heald, Rebecca;
Lister, Ryan;
Huynen, Martijn A.;
van Heeringen, Simon J.;
Veenstra, Gert Jan C.

Publication type:

Article

Promoting RNA editing by ADAR attraction.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1343-7

By:

Danan-Gotthold, Miri;
Levanon, Erez Y.

Publication type:

Article

Epitranscriptomic influences on development and disease.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1336-6

By:

Hsu, Phillip J.;
Hailing Shi;
Chuan He

Publication type:

Article

Editing inducer elements increases A-to-I editing efficiency in the mammalian transcriptome.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1324-x

By:

Daniel, Chammiran;
Widmark, Albin;
Rigardt, Ditte;
Öhman, Marie

Publication type:

Article