Works matching IS 14747596 AND DT 2015 AND VI 16 AND IP 1

Results: 221

PfAlba1: master regulator of translation in the malaria parasite.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0795-x

By:

Bunnik, Evelien M.;
Le Roch, Karine G.

Publication type:

Article

Response to Zhou and Robinson.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0782-2

By:

Betel, Doron;
Socci, Nicholas D.;
Khanin, Raya;
Mason, Christopher E.;
Rapaport, Franck

Publication type:

Article

Do count-based differential expression methods perform poorly when genes are expressed in only one condition?

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0781-3

By:

Xiaobei Zhou;
Robinson, Mark D.

Publication type:

Article

gespeR: a statistical model for deconvoluting off-target-confounded RNA interference screens.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0783-1

By:

Schmich, Fabian;
Szczurek, Ewa;
Kreibich, Saskia;
Dilling, Sabrina;
Andritschke, Daniel;
Casanova, Alain;
Shyan Huey Low;
Eicher, Simone;
Muntwiler, Simone;
Emmenlauer, Mario;
Rämö, Pauli;
Conde-Alvarez, Raquel;
von Mering, Christian;
Hardt, Wolf-Dietrich;
Dehio, Christoph;
Beerenwinkel, Niko

Publication type:

Article

Standing genetic variation as a major contributor to adaptation in the Virginia chicken lines selection experiment.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0785-z

By:

Zheya Sheng;
Pettersson, Mats E.;
Honaker, Christa F.;
Siegel, Paul B.;
Carlborg, Örjan

Publication type:

Article

Exploring the rice dispensable genome using a metagenome-like assembly strategy.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0757-3

By:

Wen Yao;
Guangwei Li;
Hu Zhao;
Gongwei Wang;
Xingming Lian;
Weibo Xie

Publication type:

Article

Harvesting rice's dispensable genome.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0787-x

By:

Wing, Rod A.

Publication type:

Article

A novel cause for primordial dwarfism revealed: defective tRNA modification.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0786-y

By:

Filonava, Liudmila;
Torres, Adrian Gabriel;
de Pouplana, Lluis Ribas

Publication type:

Article

Impact of flanking chromosomal sequences on localization and silencing by the human non-coding RNA XIST.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0774-2

By:

Kelsey, Angela D.;
Yang, Christine;
Leung, Danny;
Minks, Jakub;
Dixon-McDougall, Thomas;
Baldry, Sarah E. L.;
Bogutz, Aaron B.;
Lefebvre, Louis;
Brown, Carolyn J.

Publication type:

Article

New genes drive the evolution of gene interaction networks in the human and mouse genomes.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0772-4

By:

Wenyu Zhang;
Landback, Patrick;
Gschwend, Andrea R.;
Bairong Shen;
Manyuan Long

Publication type:

Article

Determining exon connectivity in complex mRNAs by nanopore sequencing.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0777-z

By:

Bolisetty, Mohan T.;
Rajadinakaran, Gopinath;
Graveley, Brenton R.

Publication type:

Article

Postnatal epigenetic regulation of intestinal stem cells requires DNA methylation and is guided by the microbiome.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0763-5

By:

Da-Hai Yu;
Gadkari, Manasi;
Quan Zhou;
Shiyan Yu;
Nan Gao;
Yongtao Guan;
Deborah Schady;
Roshan, Tony N.;
Miao-Hsueh Chen;
Laritsky, Eleonora;
Zhongqi Ge;
Hui Wang;
Rui Chen;
Westwater, Caroline;
Lynn Bry;
Waterland, Robert A.;
Moriarty, Chelsea;
Cindy Hwang;
Swennes, Alton G.;
Moore, Sean R.

Publication type:

Article

Mutation in WDR4 impairs tRNA m<sup>7</sup>G<sub>46</sub> methylation and causes a distinct form of microcephalic primordial dwarfism.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0779-x

By:

Shaheen, Ranad;
Abdel-Salam, Ghada M. H.;
Guy, Michael P.;
Alomar, Rana;
Abdel-Hamid, Mohamed S.;
Afifi, Hanan H.;
Ismail, Samira I.;
Emam, Bayoumi A.;
Phizicky, Eric M.;
Alkuraya, Fowzan S.

Publication type:

Article

The PfAlba1 RNA-binding protein is an important regulator of translational timing in Plasmodium falciparum blood stages.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0771-5

By:

Vembar, Shruthi Sridhar;
Macpherson, Cameron Ross;
Sismeiro, Odile;
Coppée, Jean-Yves;
Scherf, Artur

Publication type:

Article

Chromatin interaction analysis reveals changes in small chromosome and telomere clustering between epithelial and breast cancer cells.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0768-0

By:

Barutcu, A. Rasim;
Lajoie, Bryan R.;
McCord, Rachel P.;
Tye, Coralee E.;
Hong, Deli;
Messier, Terri L.;
Browne, Gillian;
van Wijnen, Andre J.;
Lian, Jane B.;
Stein, Janet L.;
Dekker, Job;
Imbalzano, Anthony N.;
Stein, Gary S.

Publication type:

Article

Heterochromatin Protein 1β (HP1β) has distinct functions and distinct nuclear distribution in pluripotent versus differentiated cells.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0760-8

By:

Mattout, Anna;
Aaronson, Yair;
Sailaja, Badi Sri;
Raghu Ram, Edupuganti V.;
Harikumar, Arigela;
Mallm, Jan-Philipp;
Sim, Kae Hwan;
Nissim-Rafinia, Malka;
Supper, Emmanuelle;
Singh, Prim B.;
Sze, Siu Kwan;
Gasser, Susan M.;
Rippe, Karsten;
Meshorer, Eran

Publication type:

Article

Deep sequencing and de novo assembly of the mouse oocyte transcriptome define the contribution of transcription to the DNA methylation landscape.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0769-z

By:

Veselovska, Lenka;
Smallwood, Sebastien A.;
Saadeh, Heba;
Stewart, Kathleen R.;
Krueger, Felix;
Maupetit-Méhouas, Stéphanie;
Arnaud, Philippe;
Shin-ichi Tomizawa;
Andrews, Simon;
Kelsey, Gavin

Publication type:

Article

Metassembler: merging and optimizing de novo genome assemblies.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0764-4

By:

Wences, Alejandro Hernandez;
Schatz, Michael C.

Publication type:

Article

Exploring the rice dispensable genome using a metagenome-like assembly strategy.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0757-3

By:

Wen Yao;
Guangwei Li;
Hu Zhao;
Gongwei Wang;
Xingming Lian;
Weibo Xie

Publication type:

Article

Spatial reorganization of telomeres in long-lived quiescent cells.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0766-2

By:

Guidi, Micol;
Ruault, Myriam;
Marbouty, Martial;
Loïodice, Isabelle;
Cournac, Axel;
Billaudeau, Cyrille;
Hocher, Antoine;
Mozziconacci, Julien;
Koszul, Romain;
Taddei, Angela

Publication type:

Article

De novo ChIP-seq analysis.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0756-4

By:

Xin He;
Ercument Cicek, A.;
Yuhao Wang;
Schulz, Marcel H.;
Hai-Son Le;
Bar-Joseph, Ziv

Publication type:

Article

Comparison of Hi-C results using in-solution versus in-nucleus ligation.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0753-7

By:

Takashi Nagano;
Várnai, Csilla;
Schoenfelder, Stefan;
Javierre, Biola-Maria;
Wingett, Steven W.;
Fraser, Peter

Publication type:

Article

Host genetic architecture and the landscape of microbiome composition: humans weigh in.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0775-1

By:

Benson, Andrew K.

Publication type:

Article

Single-cell analysis reveals key roles for Bcl11a in regulating stem cell fate decisions.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0778-y

By:

Powers, Ashley N.;
Satija, Rahul

Publication type:

Article

HiCPlotter integrates genomic data with interaction matrices.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0767-1

By:

Akdemir, Kadir Caner;
Chin, Lynda

Publication type:

Article

Regulation of constitutive and alternative mRNA splicing across the human transcriptome by PRPF8 is determined by 5' splice site strength.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0749-3

By:

Wickramasinghe, Vihandha O.;
Gonzàlez-Porta, Mar;
Perera, David;
Bartolozzi, Arthur R.;
Sibley, Christopher R.;
Hallegger, Martina;
Ule, Jernej;
Marioni, John C.;
Venkitaraman, Ashok R.

Publication type:

Article

Comparative genomics of Steinernema reveals deeply conserved gene regulatory networks.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0746-6

By:

Dillman, Adler R.;
Macchietto, Marissa;
Porter, Camille F.;
Rogers, Alicia;
Williams, Brian;
Antoshechkin, Igor;
Ming-Min Lee;
Goodwin, Zane;
Xiaojun Lu;
Lewis, Edwin E.;
Goodrich-Blair, Heidi;
Patricia Stock, S.;
Adams, Byron J.;
Sternberg, Paul W.;
Mortazavi, Ali

Publication type:

Article

Single-cell transcriptomic reconstruction reveals cell cycle and multi-lineage differentiation defects in Bcl11a-deficient hematopoietic stem cells.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0739-5

By:

Tsang, Jason C. H.;
Yong Yu;
Burke, Shannon;
Buettner, Florian;
Cui Wang;
Kolodziejczyk, Aleksandra A.;
Teichmann, Sarah A.;
Liming Lu;
Pentao Liu

Publication type:

Article

Leaves of grass: focusing phenomics on maize leaf growth.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0773-3

By:

Scanlon, Michael J.

Publication type:

Article

Tools and best practices for data processing in allelic expression analysis.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0762-6

By:

Castel, Stephane E.;
Levy-Moonshine, Ami;
Mohammadi, Pejman;
Banks, Eric;
Lappalainen, Tuuli

Publication type:

Article

An ensemble approach to accurately detect somatic mutations using SomaticSeq.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0758-2

By:

Li Tai Fang;
Afshar, Pegah Tootoonchi;
Chhibber, Aparna;
Mohiyuddin, Marghoob;
Yu Fan;
Mu, John C.;
Gibeling, Greg;
Barr, Sharon;
Asadi, Narges Bani;
Gerstein, Mark B.;
Koboldt, Daniel C.;
Wenyi Wang;
Wong, Wing H.;
Lam, Hugo Y. K.

Publication type:

Article

The senescent methylome and its relationship with cancer, ageing and germline genetic variation in humans.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0748-4

By:

Lowe, Robert;
Overhoff, Marita G.;
Ramagopalan, Sreeram V.;
Garbe, James C.;
Koh, James;
Stampfer, Martha R.;
Beach, David H.;
Rakyan, Vardhman K.;
Bishop, Cleo L.

Publication type:

Article

Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0741-y

By:

Fortin, Jean-Philippe;
Hansen, Kasper D.

Publication type:

Article

Molecular memories in the regulation of seasonal flowering: from competence to cessation.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0770-6

By:

Bratzel, Fabian;
Turck, Franziska

Publication type:

Article

Host genetic variation impacts microbiome composition across human body sites.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0759-1

By:

Blekhman, Ran;
Goodrich, Julia K.;
Huang, Katherine;
Qi Sun;
Bukowski, Robert;
Bell, Jordana T.;
Spector, Timothy D.;
Keinan, Alon;
Ley, Ruth E.;
Gevers, Dirk;
Clark, Andrew G.

Publication type:

Article

Limited evidence that cancer susceptibility regions are preferential targets for somatic mutation.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0755-5

By:

Machiela, Mitchell J.;
Ho, Brian M.;
Fisher, Victoria A.;
Xing Hua;
Chanock, Stephen J.

Publication type:

Article

CPAG: software for leveraging pleiotropy in GWAS to reveal similarity between human traits links plasma fatty acids and intestinal inflammation.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0722-1

By:

Liuyang Wang;
Oehlers, Stefan H.;
Espenschied, Scott T.;
Rawls, John F.;
Tobin, David M.;
Ko, Dennis C.

Publication type:

Article

Finding smORFs: getting closer.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0765-3

By:

Couso, Juan Pablo

Publication type:

Article

Extensive identification and analysis of conserved small ORFs in animals.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0742-x

By:

Mackowiak, Sebastian D.;
Zauber, Henrik;
Bielow, Chris;
Thie, Denise;
Kutz, Kamila;
Calviello, Lorenzo;
Mastrobuoni, Guido;
Rajewsky, Nikolaus;
Kempa, Stefan;
Selbach, Matthias;
Obermayer, Benedikt

Publication type:

Article

Correlation analysis of the transcriptome of growing leaves with mature leaf parameters in a maize RIL population.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0735-9

By:

Baute, Joke;
Herman, Dorota;
Coppens, Frederik;
De Block, Jolien;
Slabbinck, Bram;
Dell'Acqua, Matteo;
Pè, Mario Enrico;
Maere, Steven;
Nelissen, Hilde;
Inzé, Dirk

Publication type:

Article

Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0716-z

By:

Dell'Acqua, Matteo;
Gatti, Daniel M.;
Pea, Giorgio;
Cattonaro, Federica;
Coppens, Frederik;
Magris, Gabriele;
Hlaing, Aye L.;
Aung, Htay H.;
Nelissen, Hilde;
Baute, Joke;
Frascaroli, Elisabetta;
Churchill, Gary A.;
Inzé, Dirk;
Morgante, Michele;
Pè, Mario Enrico

Publication type:

Article

MAGIC maize: a new resource for plant genetics.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0713-2

By:

Holland, James B.

Publication type:

Article

Small-scale gene duplications played a major role in the recent evolution of wheat chromosome 3B.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0754-6

By:

Glover, Natasha M.;
Daron, Josquin;
Pingault, Lise;
Vandepoele, Klaas;
Paux, Etienne;
Feuillet, Catherine;
Choulet, Frédéric

Publication type:

Article

Multiple sources of bias confound functional enrichment analysis of global -omics data.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0761-7

By:

Timmons, James A.;
Szkop, Krzysztof J.;
Gallagher, Iain J.

Publication type:

Article

Comparative analyses of CTCF and BORIS occupancies uncover two distinct classes of CTCF binding genomic regions.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0736-8

By:

Pugacheva, Elena M.;
Rivero-Hinojosa, Samuel;
Espinoza, Celso A.;
Fabiola Méndez-Catalá, Claudia;
Sungyun Kang;
Teruhiko Suzuki;
Natsuki Kosaka-Suzuki;
Robinson, Susan;
Nagarajan, Vijayaraj;
Zhen Ye;
Boukaba, Abdelhalim;
Rasko, John E. J.;
Strunnikov, Alexander V.;
Loukinov, Dmitri;
Bing Ren;
Lobanenkov, Victor V.

Publication type:

Article

A novel multi-tissue RNA diagnostic of healthy ageing relates to cognitive health status.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0750-x

By:

Sood, Sanjana;
Gallagher, Iain J.;
Lunnon, Katie;
Rullman, Eric;
Keohane, Aoife;
Crossland, Hannah;
Phillips, Bethan E.;
Cederholm, Tommy;
Jensen, Thomas;
van Loon, Luc J. C.;
Lannfelt, Lars;
Kraus, William E.;
Atherton, Philip J.;
Howard, Robert;
Gustafsson, Thomas;
Hodges, Angela;
Timmons, James A.

Publication type:

Article

CoMEt: a statistical approach to identify combinations of mutually exclusive alterations in cancer.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0700-7

By:

Leiserson, Mark D. M.;
Hsin-Ta Wu;
Vandin, Fabio;
Raphael, Benjamin J.

Publication type:

Article

Errors in RNA-Seq quantification affect genes of relevance to human disease.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0734-x

By:

Robert, Christelle;
Watson, Mick

Publication type:

Article

Xist localization and function: new insights from multiple levels.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0733-y

By:

Cerase, Andrea;
Pintacuda, Greta;
Tattermusch, Anna;
Avner, Philip

Publication type:

Article

Exploiting single-molecule transcript sequencing for eukaryotic gene prediction.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0729-7

By:

Minoche, André E.;
Dohm, Juliane C.;
Schneider, Jessica;
Holtgräwe, Daniela;
Viehöver, Prisca;
Montfort, Magda;
Sörensen, Thomas Rosleff;
Weisshaar, Bernd;
Himmelbauer, Heinz

Publication type:

Article