Works matching IS 14747596 AND DT 2015 AND VI 16

Results: 303

P16-specific DNA methylation by engineered zinc finger methyltransferase inactivates gene transcription and promotes cancer metastasis.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0819-6

By:

Chenghua Cui;
Ying Gan;
Liankun Gu;
Wilson, James;
Zhaojun Liu;
Baozhen Zhang;
Dajun Deng

Publication type:

Article

Erratum to: Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data.

Published in:: Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0813-z
Publication type:: Article

Accelerating research through reagent repositories: the genome editing example.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0830-y

By:

Joung, J. Keith;
Voytas, Daniel F.;
Kamens, Joanne

Publication type:

Article

Boosting plant immunity with CRISPR/Cas.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0829-4

By:

Chaparro-Garcia, Angela;
Kamoun, Sophien;
Nekrasov, Vladimir

Publication type:

Article

Using genomics to combat infectious diseases on a global scale.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0822-y

By:

Cain, Amy K.;
Lees, John A.

Publication type:

Article

Rapid characterization of CRISPR-Cas9 protospacer adjacent motif sequence elements.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0818-7

By:

Karvelis, Tautvydas;
Gasiunas, Giedrius;
Young, Joshua;
Bigelyte, Greta;
Silanskas, Arunas;
Cigan, Mark;
Siksnys, Virginijus

Publication type:

Article

The Cpf1 CRISPR-Cas protein expands genome-editing tools.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0824-9

By:

Fagerlund, Robert D.;
Staals, Raymond H. J.;
Fineran, Peter C.

Publication type:

Article

Zinc finger nuclease-based double-strand breaks attenuate malaria parasites and reveal rare microhomology-mediated end joining.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0811-1

By:

Singer, Mirko;
Marshall, Jennifer;
Heiss, Kirsten;
Mair, Gunnar R.;
Grimm, Dirk;
Mueller, Ann-Kristin;
Frischknecht, Friedrich

Publication type:

Article

CRISPR/Cas9-mediated viral interference in plants.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0799-6

By:

Ali, Zahir;
Abulfaraj, Aala;
Idris, Ali;
Ali, Shakila;
Tashkandi, Manal;
Mahfouz, Magdy M.

Publication type:

Article

Pop in, pop out: a novel gene-targeting strategy for use with CRISPR-Cas9.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0810-2

By:

Kühn, Ralf;
Van Trung Chu

Publication type:

Article

A novel two-step genome editing strategy with CRISPR-Cas9 provides new insights into telomerase action and TERT gene expression.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0791-1

By:

Linghe Xi;
Schmidt, Jens C.;
Zaug, Arthur J.;
Ascarrunz, Dante R.;
Cech, Thomas R.

Publication type:

Article

CRISPR sabotage.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0820-0

By:

van der Oost, John;
Brouns, Stan J. J.

Publication type:

Article

Diversity of CRISPR-Cas immune systems and molecular machines.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0816-9

By:

Barrangou, Rodolphe

Publication type:

Article

High-frequency, precise modification of the tomato genome.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0796-9

By:

Čermák, Tomáš;
Baltes, Nicholas J.;
Čegan, Radim;
Yong Zhang;
Voytas, Daniel F.

Publication type:

Article

The societal opportunities and challenges of genome editing.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0812-0

By:

Carroll, Dana;
Charo, R. Alta

Publication type:

Article

A transient ischemic environment induces reversible compaction of chromatin.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0802-2

By:

Kirmes, Ina;
Szczurek, Aleksander;
Prakash, Kirti;
Charapitsa, Iryna;
Heiser, Christina;
Musheev, Michael;
Schock, Florian;
Fornalczyk, Karolina;
Ma, Dongyu;
Birk, Udo;
Cremer, Christoph;
Reid, George

Publication type:

Article

Spatio-temporal regulation of circular RNA expression during porcine embryonic brain development.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0801-3

By:

Venø, Morten T.;
Hansen, Thomas B.;
Venø, Susanne T.;
Clausen, Bettina H.;
Grebing, Manuela;
Finsen, Bente;
Holm, Ida E.;
Kjems, Jørgen

Publication type:

Article

TLE6 mutation causes the earliest known human embryonic lethality.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0792-0

By:

Alazami, Anas M.;
Awad, Salma M.;
Coskun, Serdar;
Al-Hassan, Saad;
Hijazi, Hadia;
Abdulwahab, Firdous M.;
Poizat, Coralie;
Alkuraya, Fowzan S.

Publication type:

Article

Mammoth 2.0: will genome engineering resurrect extinct species?

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0800-4

By:

Shapiro, Beth

Publication type:

Article

ZIFA: Dimensionality reduction for zero-inflated single-cell gene expression analysis.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0805-z

By:

Pierson, Emma;
Yau, Christopher

Publication type:

Article

Subtractive assembly for comparative metagenomics, and its application to type 2 diabetes metagenomes.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0804-0

By:

Mingjie Wang;
Doak, Thomas G.;
Yuzhen Ye

Publication type:

Article

WU-CRISPR: characteristics of functional guide RNAs for the CRISPR/Cas9 system.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0784-0

By:

Nathan Wong;
Weijun Liu;
Xiaowei Wang

Publication type:

Article

Network analysis of gene essentiality in functional genomics experiments.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0808-9

By:

Peng Jiang;
Hongfang Wang;
Wei Li;
Chongzhi Zang;
Bo Li;
Wong, Yinling J.;
Meyer, Cliff;
Liu, Jun S.;
Aster, Jon C.;
Liu, X. Shirley

Publication type:

Article

The first aurochs genome reveals the breeding history of British and European cattle.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0793-z

By:

Orlando, Ludovic

Publication type:

Article

Genome sequencing of the extinct Eurasian wild aurochs, Bos primigenius, illuminates the phylogeography and evolution of cattle.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0790-2

By:

Park, Stephen D. E.;
Magee, David A.;
McGettigan, Paul A.;
Teasdale, Matthew D.;
Edwards, Ceiridwen J.;
Lohan, Amanda J.;
Murphy, Alison;
Braud, Martin;
Donoghue, Mark T.;
Yuan Liu;
Chamberlain, Andrew T.;
Rue-Albrecht, Kévin;
Schroeder, Steven;
Spillane, Charles;
Shuaishuai Tai;
Bradley, Daniel G.;
Sonstegard, Tad S.;
Loftus, Brendan J.;
MacHugh, David E.

Publication type:

Article

HiFive: a tool suite for easy and efficient HiC and 5C data analysis.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0806-y

By:

Sauria, Michael E. G.;
Cremins, Jennifer E. Phillips;
Corces, Victor G.;
Taylor, James

Publication type:

Article

Promoter-like epigenetic signatures in exons displaying cell type-specific splicing.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0797-8

By:

Curado, Joao;
Iannone, Camilla;
Tilgner, Hagen;
Valcárcel, Juan;
Guigó, Roderic

Publication type:

Article

Teaser: Individualized benchmarking and optimization of read mapping results for NGS data.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0803-1

By:

Smolka, Moritz;
Rescheneder, Philipp;
Schatz, Michael C.;
von Haeseler, Arndt;
Sedlazeck, Fritz J.

Publication type:

Article

Erratum to: gespeR: a statistical model for deconvoluting off-target-confounded RNA interference screens.

Published in:: Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0807-x
Publication type:: Article

Schmutzi: estimation of contamination and endogenous mitochondrial consensus calling for ancient DNA.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0776-0

By:

Renaud, Gabriel;
Slon, Viviane;
Duggan, Ana T.;
Kelso, Janet

Publication type:

Article

The utility of transposon mutagenesis for cancer studies in the era of genome editing.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0794-y

By:

De Nicola, Gina M.;
Karreth, Florian A.;
Adams, David J.;
Wong, Chi C.

Publication type:

Article

Genome-wide mapping reveals single-origin chromosome replication in Leishmania, a eukaryotic microbe.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0788-9

By:

Marques, Catarina A.;
Dickens, Nicholas J.;
Paape, Daniel;
Campbell, Samantha J.;
McCulloch, Richard

Publication type:

Article

Erratum to: Chronic cocaine-regulated epigenomic changes in mouse nucleus accumbens.

Published in:: Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0789-8
Publication type:: Article

Erratum to: Comprehensive gene panels provide advantages over clinical exome sequencing for Mendelian diseases.

Published in:: Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0798-7
Publication type:: Article

The first whole genome and transcriptome of the cinereous vulture reveals adaptation in the gastric and immune defense systems and possible convergent evolution between the Old and New World vultures.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0780-4

By:

Oksung Chung;
Seondeok Jin;
Yun Sung Cho;
Jeongheui Lim;
Hyunho Kim;
Sungwoong Jho;
Hak-Min Kim;
Je Hoon Jun;
HyeJin Lee;
Alvin Chon;
Junsu Ko;
Jeremy Edwards;
Jessica A. Weber;
Kyudong Han;
Stephen J. O'Brien;
Andrea Manica;
Jong Bhak;
Woon Kee Paek

Publication type:

Article

PfAlba1: master regulator of translation in the malaria parasite.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0795-x

By:

Bunnik, Evelien M.;
Le Roch, Karine G.

Publication type:

Article

Response to Zhou and Robinson.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0782-2

By:

Betel, Doron;
Socci, Nicholas D.;
Khanin, Raya;
Mason, Christopher E.;
Rapaport, Franck

Publication type:

Article

Do count-based differential expression methods perform poorly when genes are expressed in only one condition?

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0781-3

By:

Xiaobei Zhou;
Robinson, Mark D.

Publication type:

Article

gespeR: a statistical model for deconvoluting off-target-confounded RNA interference screens.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0783-1

By:

Schmich, Fabian;
Szczurek, Ewa;
Kreibich, Saskia;
Dilling, Sabrina;
Andritschke, Daniel;
Casanova, Alain;
Shyan Huey Low;
Eicher, Simone;
Muntwiler, Simone;
Emmenlauer, Mario;
Rämö, Pauli;
Conde-Alvarez, Raquel;
von Mering, Christian;
Hardt, Wolf-Dietrich;
Dehio, Christoph;
Beerenwinkel, Niko

Publication type:

Article

Standing genetic variation as a major contributor to adaptation in the Virginia chicken lines selection experiment.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0785-z

By:

Zheya Sheng;
Pettersson, Mats E.;
Honaker, Christa F.;
Siegel, Paul B.;
Carlborg, Örjan

Publication type:

Article

Exploring the rice dispensable genome using a metagenome-like assembly strategy.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0757-3

By:

Wen Yao;
Guangwei Li;
Hu Zhao;
Gongwei Wang;
Xingming Lian;
Weibo Xie

Publication type:

Article

Harvesting rice's dispensable genome.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0787-x

By:

Wing, Rod A.

Publication type:

Article

A novel cause for primordial dwarfism revealed: defective tRNA modification.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0786-y

By:

Filonava, Liudmila;
Torres, Adrian Gabriel;
de Pouplana, Lluis Ribas

Publication type:

Article

Impact of flanking chromosomal sequences on localization and silencing by the human non-coding RNA XIST.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0774-2

By:

Kelsey, Angela D.;
Yang, Christine;
Leung, Danny;
Minks, Jakub;
Dixon-McDougall, Thomas;
Baldry, Sarah E. L.;
Bogutz, Aaron B.;
Lefebvre, Louis;
Brown, Carolyn J.

Publication type:

Article

New genes drive the evolution of gene interaction networks in the human and mouse genomes.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0772-4

By:

Wenyu Zhang;
Landback, Patrick;
Gschwend, Andrea R.;
Bairong Shen;
Manyuan Long

Publication type:

Article

Determining exon connectivity in complex mRNAs by nanopore sequencing.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0777-z

By:

Bolisetty, Mohan T.;
Rajadinakaran, Gopinath;
Graveley, Brenton R.

Publication type:

Article

Postnatal epigenetic regulation of intestinal stem cells requires DNA methylation and is guided by the microbiome.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0763-5

By:

Da-Hai Yu;
Gadkari, Manasi;
Quan Zhou;
Shiyan Yu;
Nan Gao;
Yongtao Guan;
Deborah Schady;
Roshan, Tony N.;
Miao-Hsueh Chen;
Laritsky, Eleonora;
Zhongqi Ge;
Hui Wang;
Rui Chen;
Westwater, Caroline;
Lynn Bry;
Waterland, Robert A.;
Moriarty, Chelsea;
Cindy Hwang;
Swennes, Alton G.;
Moore, Sean R.

Publication type:

Article

Mutation in WDR4 impairs tRNA m<sup>7</sup>G<sub>46</sub> methylation and causes a distinct form of microcephalic primordial dwarfism.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0779-x

By:

Shaheen, Ranad;
Abdel-Salam, Ghada M. H.;
Guy, Michael P.;
Alomar, Rana;
Abdel-Hamid, Mohamed S.;
Afifi, Hanan H.;
Ismail, Samira I.;
Emam, Bayoumi A.;
Phizicky, Eric M.;
Alkuraya, Fowzan S.

Publication type:

Article

The PfAlba1 RNA-binding protein is an important regulator of translational timing in Plasmodium falciparum blood stages.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0771-5

By:

Vembar, Shruthi Sridhar;
Macpherson, Cameron Ross;
Sismeiro, Odile;
Coppée, Jean-Yves;
Scherf, Artur

Publication type:

Article

Chromatin interaction analysis reveals changes in small chromosome and telomere clustering between epithelial and breast cancer cells.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0768-0

By:

Barutcu, A. Rasim;
Lajoie, Bryan R.;
McCord, Rachel P.;
Tye, Coralee E.;
Hong, Deli;
Messier, Terri L.;
Browne, Gillian;
van Wijnen, Andre J.;
Lian, Jane B.;
Stein, Janet L.;
Dekker, Job;
Imbalzano, Anthony N.;
Stein, Gary S.

Publication type:

Article