Works matching IS 14747596 AND DT 2014 AND VI 15 AND IP 7

Results: 31

Biased estimates of clonal evolution and subclonal heterogeneity can arise from PCR duplicates in deep sequencing experiments.

Published in:

Genome Biology, 2014, v. 15, n. 7, p. 1, doi. 10.1186/s13059-014-0420-4

By:

Smith, Erin N.;
Jepsen, Kristen;
Khosroheidari, Mahdieh;
Rassenti, Laura Z.;
D'Antonio, Matteo;
Ghia, Emanuela M.;
Carson, Dennis A.;
Jamieson, Catriona H. M.;
Kipps, Thomas J.;
Frazer, Kelly F.

Publication type:

Article

An RNA tertiary switch by modifying how helices are tethered.

Published in:

Genome Biology, 2014, v. 15, n. 7, p. 425, doi. 10.1186/s13059-014-0425-z

By:

Ganser, Laura R;
Mustoe, Anthony M;
Al-Hashimi, Hashim M

Publication type:

Article

Prediction of LDL cholesterol response to statin using transcriptomic and genetic variation.

Published in:

Genome Biology, 2014, v. 15, n. 7, p. 460, doi. 10.1186/s13059-014-0460-9

By:

Kyungpil Kim;
Bolotin, Eugene;
Theusch, Elizabeth;
Haiyan Huang;
Medina, Marisa W.;
Krauss, Ronald M.

Publication type:

Article

The multitude of molecular analyses in cancer: the opening of Pandora's box.

Published in:

Genome Biology, 2014, v. 15, n. 7, p. 447, doi. 10.1186/s13059-014-0447-6

By:

Russnes, Hege G.;
Lønning, Per E.;
Børresen-Dale, Anne-Lise;
Lingjærde, Ole C.

Publication type:

Article

Deletions of chromosomal regulatory boundaries are associated with congenital disease.

Published in:

Genome Biology, 2014, v. 15, n. 7, p. 423, doi. 10.1186/s13059-014-0423-1

By:

Ibn-Salem, Jonas;
Köhler, Sebastian;
Love, Michael I.;
Ho-Ryun Chung;
Ni Huang;
Hurles, Matthew E.;
Haendel, Melissa;
Washington, Nicole L.;
Smedley, Damian;
Mungall, Christopher J.;
Lewis, Suzanna E.;
Ott, Claus-Eric;
Bauer, Sebastian;
Schofield, Paul N.;
Mundlos, Stefan;
Spielmann, Malte;
Robinson, Peter N.

Publication type:

Article

Cfp1 is required for gene expression-dependent H3K4 trimethylation and H3K9 acetylation in embryonic stem cells.

Published in:

Genome Biology, 2014, v. 15, n. 7, p. 451, doi. 10.1186/s13059-014-0451-x

By:

Clouaire, Thomas;
Webb, Shaun;
Bird, Adrian

Publication type:

Article

Checkpoints couple transcription network oscillator dynamics to cell-cycle progression.

Published in:

Genome Biology, 2014, v. 15, n. 7, p. 446, doi. 10.1186/s13059-014-0446-7

By:

Bristow, Sara L.;
Leman, Adam R.;
Simmons Kovacs, Laura A.;
Deckard, Anastasia;
Harer, John;
Haase, Steven B.

Publication type:

Article

MethylPurify: tumor purity deconvolution and differential methylation detection from single tumor DNA methylomes.

Published in:

Genome Biology, 2014, v. 15, n. 7, p. 1, doi. 10.1186/s13059-014-0419-x

By:

Xiaoqi Zheng;
Qian Zhao;
Hua-Jun Wu;
Wei Li;
Haiyun Wang;
Meyer, Clifford A.;
Qin, Qian Alvin;
Han Xu;
Chongzhi Zang;
Peng Jiang;
Fuqiang Li;
Yong Hou;
Jianxing He;
Jun Wang;
Peng Zhang;
Yong Zhang;
Xiaole Shirley Liu

Publication type:

Article

SUMO-specific proteases/isopeptidases: SENPs and beyond

Published in:

Genome Biology, 2014, v. 15, n. 7, p. 422, doi. 10.1186/s13059-014-0422-2

By:

Nayak, Arnab;
Müller, Stefan

Publication type:

Article

Bringing systems biology to cancer, immunology and infectious disease.

Published in:

Genome Biology, 2014, v. 15, n. 7, p. 407, doi. 10.1186/s13059-014-0407-1

By:

Janes, Kevin A;
Chun-Chao Wang

Publication type:

Article

Chipping away at major depressive disorder.

Published in:

Genome Biology, 2014, v. 15, n. 7, p. 421, doi. 10.1186/s13059-014-0421-3

By:

Rucker, James JH;
McGuffin, Peter

Publication type:

Article

Broadening horizons: holistic viewpoints from the Biology of Genomes.

Published in:

Genome Biology, 2014, v. 15, n. 7, p. 416, doi. 10.1186/s13059-014-0416-0

By:

Carr, Ambrose;
Pe’er, Dana

Publication type:

Article

DNMT inhibitors reverse a specific signature of aberrant promoter DNA methylation and associated gene silencing in AML.

Published in:

Genome Biology, 2014, v. 15, n. 7, p. 406, doi. 10.1186/s13059-014-0406-2

By:

Lund, Kirstin;
Cole, John J.;
VanderKraats, Nathan D.;
McBryan, Tony;
Pchelintsev, Nikolay A.;
Clark, William;
Copland, Mhairi;
Edwards, John R.;
Adams, Peter D.

Publication type:

Article

GoIFISH: a system for the quantification of single cell heterogeneity from IFISH images.

Published in:

Genome Biology, 2014, v. 15, n. 7, p. 442, doi. 10.1186/s13059-014-0442-y

By:

Trinh, Anne;
Rye, Inga H.;
Almendro, Vanessa;
Helland, Åslaug;
Russnes, Hege G.;
Markowetz, Florian

Publication type:

Article

The RNA editing enzyme APOBEC1 induces somatic mutations and a compatible mutational signature is present in esophageal adenocarcinomas.

Published in:

Genome Biology, 2014, v. 15, n. 7, p. 1, doi. 10.1186/s13059-014-0417-z

By:

Saraconi, Giulia;
Severi, Francesco;
Sala, Cesare;
Mattiuz, Giorgio;
Conticello, Silvestro G.

Publication type:

Article

Comparative population genomics reveals the domestication history of the peach, Prunus persica, and human influences on perennial fruit crops.

Published in:

Genome Biology, 2014, v. 15, n. 7, p. 1, doi. 10.1186/s13059-014-0415-1

By:

Ke Cao;
Zhijun Zheng;
Lirong Wang;
Xin Liu;
Gengrui Zhu;
Weichao Fang;
Shifeng Cheng;
Peng Zeng;
Changwen Chen;
Xinwei Wang;
Min Xie;
Xiao Zhong;
Xiaoli Wang;
Pei Zhao;
Chao Bian;
Yinling Zhu;
Jiahui Zhang;
Guosheng Ma;
Chengxuan Chen;
Yanjun Li

Publication type:

Article

Building a data sharing model for global genomic research.

Published in:

Genome Biology, 2014, v. 15, n. 7, p. 430, doi. 10.1186/s13059-014-0430-2

By:

Kosseim, Patricia;
Dove, Edward S.;
Baggaley, Carman;
Meslin, Eric M.;
Cate, Fred H.;
Kaye, Jane;
Harris, Jennifer R.;
Knoppers, Bartha M.

Publication type:

Article

Metastatic tumor evolution and organoid modeling implicate TGFBR2 as a cancer driver in diffuse gastric cancer.

Published in:

Genome Biology, 2014, v. 15, n. 7, p. 28, doi. 10.1186/s13059-014-0428-9

By:

Nadauld, Lincoln D.;
Garcia, Sarah;
Natsoulis, Georges;
Bell, John M.;
Miotke, Laura;
Hopmans, Erik S.;
Hua Xu;
Pai, Reetesh K.;
Palm, Curt;
Regan, John F.;
Hao Chen;
Flaherty, Patrick;
Ootani, Akifumi;
Zhang, Nancy R.;
Ford, James M.;
Kuo, Calvin J.;
Ji, Hanlee P.

Publication type:

Article

DNA copy number evolution in Drosophila cell lines.

Published in:

Genome Biology, 2014, v. 15, n. 7, p. R70, doi. 10.1186/gb-2014-15-8-r70

By:

Hangnoh Lee;
McManus, C. Joel;
Dong-Yeon Cho;
Eaton, Matthew;
Renda, Fioranna;
Somma, Maria Patrizia;
Cherbas, Lucy;
May, Gemma;
Powell, Sara;
Dayu Zhang;
Lijun Zhan;
Resch, Alissa;
Andrews, Justen;
Celniker, Susan E.;
Cherbas, Peter;
Przytycka, Teresa M.;
Gatti, Maurizio;
Oliver, Brian;
Graveley, Brenton;
MacAlpine, David

Publication type:

Article

MBASED: allele-specific expression detection in cancer tissues and cell lines.

Published in:

Genome Biology, 2014, v. 15, n. 7, p. 405, doi. 10.1186/s13059-014-0405-3

By:

Mayba, Oleg;
Gilbert, Houston N.;
Jinfeng Liu;
Haverty, Peter M.;
Jhunjhunwala, Suchit;
Zhaoshi Jiang;
Watanabe, Colin;
Zemin Zhang

Publication type:

Article

OrthoClust: an orthology-based network framework for clustering data across multiple species.

Published in:

Genome Biology, 2014, v. 15, n. 7, p. R100, doi. 10.1186/gb-2014-15-8-r100

By:

Koon-Kiu Yan;
Daifeng Wang;
Rozowsky, Joel;
Zheng, Henry;
Chao Cheng;
Gerstein, Mark

Publication type:

Article

Deciphering intratumor heterogeneity and temporal acquisition of driver events to refine precision medicine.

Published in:

Genome Biology, 2014, v. 15, n. 7, p. 453, doi. 10.1186/s13059-014-0453-8

By:

Hiley, Crispin;
de Bruin, Elza C.;
McGranahan, Nicholas;
Swanton, Charles

Publication type:

Article

Organizing knowledge to enable personalization of medicine in cancer.

Published in:

Genome Biology, 2014, v. 15, n. 7, p. 438, doi. 10.1186/s13059-014-0438-7

By:

Good, Benjamin M.;
Ainscough, Benjamin J.;
McMichael, Josh F.;
Su, Andrew I.;
Griffith, Obi L.

Publication type:

Article

Cancer genomics: one cell at a time.

Published in:

Genome Biology, 2014, v. 15, n. 7, p. 452, doi. 10.1186/s13059-014-0452-9

By:

Navin, Nicholas E.

Publication type:

Article

Discovery of novel transcripts and gametophytic functions via RNA-seq analysis of maize gametophytic transcriptomes.

Published in:

Genome Biology, 2014, v. 15, n. 7, p. 1, doi. 10.1186/s13059-014-0414-2

By:

Chettoor, Antony M.;
Givan, Scott A.;
Cole, Rex A.;
Coker, Clayton T.;
Unger-Wallace, Erica;
Vejlupkova, Zuzana;
Vollbrecht, Erik;
Fowler, John E.;
Evans, Matthew M. S.

Publication type:

Article

A simple metric of promoter architecture robustly predicts expression breadth of human genes suggesting that most transcription factors are positive regulators.

Published in:

Genome Biology, 2014, v. 15, n. 7, p. 1, doi. 10.1186/s13059-014-0413-3

By:

Hurst, Laurence D.;
Sachenkova, Oxana;
Daub, Carsten;
Forrest, Alistair R. R.;
Huminiecki, Lukasz

Publication type:

Article

Non-targeted transcription factors motifs are a systemic component of ChIP-seq datasets.

Published in:

Genome Biology, 2014, v. 15, n. 7, p. 1, doi. 10.1186/s13059-014-0412-4

By:

Worsley Hunt, Rebecca;
Wasserman, Wyeth W.

Publication type:

Article

Corset: enabling differential gene expression analysis for de novo assembled transcriptomes.

Published in:

Genome Biology, 2014, v. 15, n. 7, p. 1, doi. 10.1186/s13059-014-0410-6

By:

Davidson, Nadia M.;
Oshlack, Alicia

Publication type:

Article

Expanded identification and characterization of mammalian circular RNAs.

Published in:

Genome Biology, 2014, v. 15, n. 7, p. 1, doi. 10.1186/s13059-014-0409-z

By:

Guo, Junjie U.;
Agarwal, Vikram;
Guo, Huili;
Bartel, David P.

Publication type:

Article

Whole-genome bisulfite sequencing of multiple individuals reveals complementary roles of promoter and gene body methylation in transcriptional regulation.

Published in:

Genome Biology, 2014, v. 15, n. 7, p. 1, doi. 10.1186/s13059-014-0408-0

By:

Shaoke Lou;
Heung-Man Lee;
Hao Qin;
Jing-Woei Li;
Zhibo Gao;
Xin Liu;
Chan, Landon L.;
Lam, Vincent K. L.;
Wing-Yee So;
Ying Wang;
Si Lok;
Jun Wang;
Ma, Ronald C. W.;
Kwok-Wing Tsui, Stephen;
Chan, Juliana C. N.;
Ting-Fung Chan;
Yip, Kevin Y.

Publication type:

Article

Nutritional status modulates box C/D snoRNP biogenesis by regulated subcellular relocalization of the R2TP complex.

Published in:

Genome Biology, 2014, v. 15, n. 7, p. 1, doi. 10.1186/s13059-014-0404-4

By:

Yoshito Kakihara;
Taras Makhnevych;
Liang Zhao;
Weiwen Tang;
Houry, Walid A.

Publication type:

Article