Works matching IS 14747596 AND DT 2014 AND VI 15 AND IP 7

Results: 31

Biased estimates of clonal evolution and subclonal heterogeneity can arise from PCR duplicates in deep sequencing experiments.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 1, doi. 10.1186/s13059-014-0420-4
By:
- Smith, Erin N.;
- Jepsen, Kristen;
- Khosroheidari, Mahdieh;
- Rassenti, Laura Z.;
- D'Antonio, Matteo;
- Ghia, Emanuela M.;
- Carson, Dennis A.;
- Jamieson, Catriona H. M.;
- Kipps, Thomas J.;
- Frazer, Kelly F.
Publication type:
Article
An RNA tertiary switch by modifying how helices are tethered.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 425, doi. 10.1186/s13059-014-0425-z
By:
- Ganser, Laura R;
- Mustoe, Anthony M;
- Al-Hashimi, Hashim M
Publication type:
Article
Prediction of LDL cholesterol response to statin using transcriptomic and genetic variation.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 460, doi. 10.1186/s13059-014-0460-9
By:
- Kyungpil Kim;
- Bolotin, Eugene;
- Theusch, Elizabeth;
- Haiyan Huang;
- Medina, Marisa W.;
- Krauss, Ronald M.
Publication type:
Article
The multitude of molecular analyses in cancer: the opening of Pandora's box.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 447, doi. 10.1186/s13059-014-0447-6
By:
- Russnes, Hege G.;
- Lønning, Per E.;
- Børresen-Dale, Anne-Lise;
- Lingjærde, Ole C.
Publication type:
Article
Deletions of chromosomal regulatory boundaries are associated with congenital disease.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 423, doi. 10.1186/s13059-014-0423-1
By:
- Ibn-Salem, Jonas;
- Köhler, Sebastian;
- Love, Michael I.;
- Ho-Ryun Chung;
- Ni Huang;
- Hurles, Matthew E.;
- Haendel, Melissa;
- Washington, Nicole L.;
- Smedley, Damian;
- Mungall, Christopher J.;
- Lewis, Suzanna E.;
- Ott, Claus-Eric;
- Bauer, Sebastian;
- Schofield, Paul N.;
- Mundlos, Stefan;
- Spielmann, Malte;
- Robinson, Peter N.
Publication type:
Article
Cfp1 is required for gene expression-dependent H3K4 trimethylation and H3K9 acetylation in embryonic stem cells.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 451, doi. 10.1186/s13059-014-0451-x
By:
- Clouaire, Thomas;
- Webb, Shaun;
- Bird, Adrian
Publication type:
Article
Checkpoints couple transcription network oscillator dynamics to cell-cycle progression.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 446, doi. 10.1186/s13059-014-0446-7
By:
- Bristow, Sara L.;
- Leman, Adam R.;
- Simmons Kovacs, Laura A.;
- Deckard, Anastasia;
- Harer, John;
- Haase, Steven B.
Publication type:
Article
MethylPurify: tumor purity deconvolution and differential methylation detection from single tumor DNA methylomes.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 1, doi. 10.1186/s13059-014-0419-x
By:
- Xiaoqi Zheng;
- Qian Zhao;
- Hua-Jun Wu;
- Wei Li;
- Haiyun Wang;
- Meyer, Clifford A.;
- Qin, Qian Alvin;
- Han Xu;
- Chongzhi Zang;
- Peng Jiang;
- Fuqiang Li;
- Yong Hou;
- Jianxing He;
- Jun Wang;
- Peng Zhang;
- Yong Zhang;
- Xiaole Shirley Liu
Publication type:
Article
SUMO-specific proteases/isopeptidases: SENPs and beyond
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 422, doi. 10.1186/s13059-014-0422-2
By:
- Nayak, Arnab;
- Müller, Stefan
Publication type:
Article
Bringing systems biology to cancer, immunology and infectious disease.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 407, doi. 10.1186/s13059-014-0407-1
By:
- Janes, Kevin A;
- Chun-Chao Wang
Publication type:
Article
Chipping away at major depressive disorder.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 421, doi. 10.1186/s13059-014-0421-3
By:
- Rucker, James JH;
- McGuffin, Peter
Publication type:
Article
Broadening horizons: holistic viewpoints from the Biology of Genomes.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 416, doi. 10.1186/s13059-014-0416-0
By:
- Carr, Ambrose;
- Pe’er, Dana
Publication type:
Article
DNMT inhibitors reverse a specific signature of aberrant promoter DNA methylation and associated gene silencing in AML.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 406, doi. 10.1186/s13059-014-0406-2
By:
- Lund, Kirstin;
- Cole, John J.;
- VanderKraats, Nathan D.;
- McBryan, Tony;
- Pchelintsev, Nikolay A.;
- Clark, William;
- Copland, Mhairi;
- Edwards, John R.;
- Adams, Peter D.
Publication type:
Article
GoIFISH: a system for the quantification of single cell heterogeneity from IFISH images.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 442, doi. 10.1186/s13059-014-0442-y
By:
- Trinh, Anne;
- Rye, Inga H.;
- Almendro, Vanessa;
- Helland, Åslaug;
- Russnes, Hege G.;
- Markowetz, Florian
Publication type:
Article
The RNA editing enzyme APOBEC1 induces somatic mutations and a compatible mutational signature is present in esophageal adenocarcinomas.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 1, doi. 10.1186/s13059-014-0417-z
By:
- Saraconi, Giulia;
- Severi, Francesco;
- Sala, Cesare;
- Mattiuz, Giorgio;
- Conticello, Silvestro G.
Publication type:
Article
Comparative population genomics reveals the domestication history of the peach, Prunus persica, and human influences on perennial fruit crops.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 1, doi. 10.1186/s13059-014-0415-1
By:
- Ke Cao;
- Zhijun Zheng;
- Lirong Wang;
- Xin Liu;
- Gengrui Zhu;
- Weichao Fang;
- Shifeng Cheng;
- Peng Zeng;
- Changwen Chen;
- Xinwei Wang;
- Min Xie;
- Xiao Zhong;
- Xiaoli Wang;
- Pei Zhao;
- Chao Bian;
- Yinling Zhu;
- Jiahui Zhang;
- Guosheng Ma;
- Chengxuan Chen;
- Yanjun Li
Publication type:
Article
Building a data sharing model for global genomic research.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 430, doi. 10.1186/s13059-014-0430-2
By:
- Kosseim, Patricia;
- Dove, Edward S.;
- Baggaley, Carman;
- Meslin, Eric M.;
- Cate, Fred H.;
- Kaye, Jane;
- Harris, Jennifer R.;
- Knoppers, Bartha M.
Publication type:
Article
Metastatic tumor evolution and organoid modeling implicate TGFBR2 as a cancer driver in diffuse gastric cancer.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 28, doi. 10.1186/s13059-014-0428-9
By:
- Nadauld, Lincoln D.;
- Garcia, Sarah;
- Natsoulis, Georges;
- Bell, John M.;
- Miotke, Laura;
- Hopmans, Erik S.;
- Hua Xu;
- Pai, Reetesh K.;
- Palm, Curt;
- Regan, John F.;
- Hao Chen;
- Flaherty, Patrick;
- Ootani, Akifumi;
- Zhang, Nancy R.;
- Ford, James M.;
- Kuo, Calvin J.;
- Ji, Hanlee P.
Publication type:
Article
DNA copy number evolution in Drosophila cell lines.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. R70, doi. 10.1186/gb-2014-15-8-r70
By:
- Hangnoh Lee;
- McManus, C. Joel;
- Dong-Yeon Cho;
- Eaton, Matthew;
- Renda, Fioranna;
- Somma, Maria Patrizia;
- Cherbas, Lucy;
- May, Gemma;
- Powell, Sara;
- Dayu Zhang;
- Lijun Zhan;
- Resch, Alissa;
- Andrews, Justen;
- Celniker, Susan E.;
- Cherbas, Peter;
- Przytycka, Teresa M.;
- Gatti, Maurizio;
- Oliver, Brian;
- Graveley, Brenton;
- MacAlpine, David
Publication type:
Article
MBASED: allele-specific expression detection in cancer tissues and cell lines.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 405, doi. 10.1186/s13059-014-0405-3
By:
- Mayba, Oleg;
- Gilbert, Houston N.;
- Jinfeng Liu;
- Haverty, Peter M.;
- Jhunjhunwala, Suchit;
- Zhaoshi Jiang;
- Watanabe, Colin;
- Zemin Zhang
Publication type:
Article
OrthoClust: an orthology-based network framework for clustering data across multiple species.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. R100, doi. 10.1186/gb-2014-15-8-r100
By:
- Koon-Kiu Yan;
- Daifeng Wang;
- Rozowsky, Joel;
- Zheng, Henry;
- Chao Cheng;
- Gerstein, Mark
Publication type:
Article
Deciphering intratumor heterogeneity and temporal acquisition of driver events to refine precision medicine.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 453, doi. 10.1186/s13059-014-0453-8
By:
- Hiley, Crispin;
- de Bruin, Elza C.;
- McGranahan, Nicholas;
- Swanton, Charles
Publication type:
Article
Organizing knowledge to enable personalization of medicine in cancer.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 438, doi. 10.1186/s13059-014-0438-7
By:
- Good, Benjamin M.;
- Ainscough, Benjamin J.;
- McMichael, Josh F.;
- Su, Andrew I.;
- Griffith, Obi L.
Publication type:
Article
Cancer genomics: one cell at a time.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 452, doi. 10.1186/s13059-014-0452-9
By:
- Navin, Nicholas E.
Publication type:
Article
Discovery of novel transcripts and gametophytic functions via RNA-seq analysis of maize gametophytic transcriptomes.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 1, doi. 10.1186/s13059-014-0414-2
By:
- Chettoor, Antony M.;
- Givan, Scott A.;
- Cole, Rex A.;
- Coker, Clayton T.;
- Unger-Wallace, Erica;
- Vejlupkova, Zuzana;
- Vollbrecht, Erik;
- Fowler, John E.;
- Evans, Matthew M. S.
Publication type:
Article
A simple metric of promoter architecture robustly predicts expression breadth of human genes suggesting that most transcription factors are positive regulators.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 1, doi. 10.1186/s13059-014-0413-3
By:
- Hurst, Laurence D.;
- Sachenkova, Oxana;
- Daub, Carsten;
- Forrest, Alistair R. R.;
- Huminiecki, Lukasz
Publication type:
Article
Non-targeted transcription factors motifs are a systemic component of ChIP-seq datasets.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 1, doi. 10.1186/s13059-014-0412-4
By:
- Worsley Hunt, Rebecca;
- Wasserman, Wyeth W.
Publication type:
Article
Corset: enabling differential gene expression analysis for de novo assembled transcriptomes.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 1, doi. 10.1186/s13059-014-0410-6
By:
- Davidson, Nadia M.;
- Oshlack, Alicia
Publication type:
Article
Expanded identification and characterization of mammalian circular RNAs.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 1, doi. 10.1186/s13059-014-0409-z
By:
- Guo, Junjie U.;
- Agarwal, Vikram;
- Guo, Huili;
- Bartel, David P.
Publication type:
Article
Whole-genome bisulfite sequencing of multiple individuals reveals complementary roles of promoter and gene body methylation in transcriptional regulation.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 1, doi. 10.1186/s13059-014-0408-0
By:
- Shaoke Lou;
- Heung-Man Lee;
- Hao Qin;
- Jing-Woei Li;
- Zhibo Gao;
- Xin Liu;
- Chan, Landon L.;
- Lam, Vincent K. L.;
- Wing-Yee So;
- Ying Wang;
- Si Lok;
- Jun Wang;
- Ma, Ronald C. W.;
- Kwok-Wing Tsui, Stephen;
- Chan, Juliana C. N.;
- Ting-Fung Chan;
- Yip, Kevin Y.
Publication type:
Article
Nutritional status modulates box C/D snoRNP biogenesis by regulated subcellular relocalization of the R2TP complex.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 1, doi. 10.1186/s13059-014-0404-4
By:
- Yoshito Kakihara;
- Taras Makhnevych;
- Liang Zhao;
- Weiwen Tang;
- Houry, Walid A.
Publication type:
Article