Works matching IS 14747596 AND DT 2014 AND VI 15 AND IP 10

Results: 40

Drug resistance genomics of the antimalarial drug artemisinin.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 544, doi. 10.1186/s13059-014-0544-6

By:

Winzeler, Elizabeth A.;
Manary, Micah J.

Publication type:

Article

Genome-wide RIP-Chip analysis of translational repressor-bound mRNAs in the Plasmodium gametocyte.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 493, doi. 10.1186/s13059-014-0493-0

By:

Guerreiro, Ana;
Deligianni, Elena;
Santos, Jorge M.;
Silva, Patricia A. G. C.;
Louis, Christos;
Pain, Arnab;
Janse, Chris J.;
Franke-Fayard, Blandine;
Carret, Celine K.;
Siden-Kiamos, Inga;
Mair, Gunnar R.

Publication type:

Article

Evolution of extensively drug-resistant Mycobacterium tuberculosis from a susceptible ancestor in a single patient.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 490, doi. 10.1186/s13059-014-0490-3

By:

Eldholm, Vegard;
Norheim, Gunnstein;
von der Lippe, Bent;
Kinander, Wibeke;
Dahle, Ulf R.;
Caugant, Dominique A.;
Mannsåker, Turid;
Torunn Mengshoel, Anne;
Dyrhol-Riise, Anne Ma;
Balloux, Francois

Publication type:

Article

Elucidating variations in the nucleotide sequence of Ebola virus associated with increasing pathogenicity.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 540, doi. 10.1186/s13059-014-0540-x

By:

Dowall, Stuart D.;
Matthews, David A.;
García-Dorival, Isabel;
Taylor, Irene;
Kenny, John;
Hertz-Fowler, Christiane;
Hall, Neil;
Corbin-Lickfett, Kara;
Empig, Cyril;
Schlunegger, Kyle;
Barr, John N.;
Carroll, Miles W.;
Hewson, Roger;
Hiscox, Julian A.

Publication type:

Article

Human infectious diseases in the genomics era: where do we go from here?

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 529, doi. 10.1186/s13059-014-0529-5

By:

Bains, Ripudaman K.

Publication type:

Article

Next-generation pathogen genomics.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 528, doi. 10.1186/s13059-014-0528-6

By:

Weinstock, George M.;
Peacock, Sharon J.

Publication type:

Article

Empowering African genomics for infectious disease control.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 515, doi. 10.1186/s13059-014-0515-y

By:

Folarin1,2, Onikepe A.;
Happi3, Anise N.;
Happi1,2, Christian T.

Publication type:

Article

Erratum: The RNA editing enzyme APOBEC1 induces somatic mutations and a compatible mutational signature is present in esophageal adenocarcinomas.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 497, doi. 10.1186/s13059-014-0497-9

By:

Saraconi, Giulia;
Severi, Francesco;
Sala, Cesare;
Mattiuz, Giorgio;
Conticello, Silvestro G.

Publication type:

Article

Whole genome sequencing of SIV-infected macaques identifies candidate loci that may contribute to host control of virus replication.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 478, doi. 10.1186/s13059-014-0478-z

By:

Ericsen, Adam J.;
Starrett, Gabriel J.;
Greene, Justin M.;
Lauck, Michael;
Raveendran, Muthuswamy;
Rio Deiros, David;
Mohns, Mariel S.;
Vince, Nicolas;
Cain, Brian T.;
Pham, Ngoc H.;
Weinfurter, Jason T.;
Bailey, Adam L.;
Budde, Melisa L.;
Wiseman, Roger W.;
Gibbs, Richard;
Muzny, Donna;
Friedrich, Thomas C.;
Rogers, Jeffrey;
O’Connor, David H.

Publication type:

Article

Proteomics informed by transcriptomics reveals Hendra virus sensitizes bat cells to TRAIL-mediated apoptosis.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 532, doi. 10.1186/s13059-014-0532-x

By:

Wynne, James W.;
Shiell, Brian J.;
Marsh, Glenn A.;
Boyd, Victoria;
Harper, Jennifer A.;
Heesom, Kate;
Monaghan, Paul;
Peng Zhou;
Payne, Jean;
Klein, Reuben;
Todd, Shawn;
Mok, Lawrence;
Green, Diane;
Bingham, John;
Tachedjian, Mary;
Baker, Michelle L.;
Matthews, David;
Lin-Fa Wang

Publication type:

Article

The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 524, doi. 10.1186/s13059-014-0524-x

By:

Treangen, Todd J.;
Ondov, Brian D.;
Koren, Sergey;
Phillippy, Adam M.

Publication type:

Article

Translating genomics research into control of tuberculosis: lessons learned and future prospects.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 514, doi. 10.1186/s13059-014-0514-z

By:

Warner, Digby F.;
Mizrahi, Valerie

Publication type:

Article

BAsE-Seq: a method for obtaining long viral haplotypes from short sequence reads.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 517, doi. 10.1186/s13059-014-0517-9

By:

Hong, Lewis Z.;
Shuzhen Hong;
Han Teng Wong;
Aw, Pauline P. K.;
Yan Cheng;
Wilm, Andreas;
de Sessions, Paola F.;
Seng Gee Lim;
Nagarajan, Niranjan;
Hibberd, Martin L.;
Quake, Stephen R.;
Burkholder, William F.

Publication type:

Article

Enhanced methods for unbiased deep sequencing of Lassa and Ebola RNA viruses from clinical and biological samples.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 519, doi. 10.1186/s13059-014-0519-7

By:

Matranga, Christian B.;
Andersen, Kristian G.;
Winnicki, Sarah;
Busby, Michele;
Gladden, Adrianne D.;
Tewhey, Ryan;
Stremlau, Matthew;
Berlin, Aaron;
Gire, Stephen K.;
England, Eleina;
Moses, Lina M.;
Mikkelsen, Tarjei S.;
Odia, Ikponmwonsa;
Ehiane, Philomena E.;
Folarin, Onikepe;
Goba, Augustine;
Grant, Donald S.;
Honko, Anna;
Hensley, Lisa;
Happi, Christian

Publication type:

Article

The genome of the sparganosis tapeworm Spirometra erinaceieuropaei isolated from the biopsy of a migrating brain lesion.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 510, doi. 10.1186/s13059-014-0510-3

By:

Bennett, Hayley M.;
Hoi Ping Mok;
Gkrania-Klotsas, Effrossyni;
Isheng J Tsai;
Stanley, Eleanor J.;
Antoun, Nagui M.;
Coghlan, Avril;
Harsha, Bhavana;
Traini, Alessandra;
Ribeiro, Diogo M.;
Steinbiss, Sascha;
Lucas, Sebastian B.;
Allinson, Kieren S. J.;
Price, Stephen J.;
Santarius, Thomas S.;
Carmichael, Andrew J.;
Chiodini, Peter L.;
Holroyd, Nancy;
Dean, Andrew F,;
Berriman, Matthew

Publication type:

Article

Lighter: fast and memory-efficient sequencing error correction without counting.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 509, doi. 10.1186/s13059-014-0509-9

By:

Li Song;
Florea, Liliana;
Langmead, Ben

Publication type:

Article

A genomic and evolutionary approach reveals non-genetic drug resistance in malaria.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 511, doi. 10.1186/s13059-014-0511-2

By:

Herman, Jonathan D.;
Rice, Daniel P.;
Ribacke, Ulf;
Silterra, Jacob;
Deik, Amy A.;
Moss, Eli L.;
Broadbent, Kate M.;
Neafsey, Daniel E.;
Desai, Michael M.;
Clish, Clary B.;
Mazitschek, Ralph;
Wirth, Dyann F.

Publication type:

Article

Mapping and manipulating the Mycobacterium tuberculosis transcriptome using a transcription factor overexpression-derived regulatory network.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 502, doi. 10.1186/s13059-014-0502-3

By:

Rustad, Tige R.;
Minch, Kyle J.;
Shuyi Ma;
Winkler, Jessica K.;
Hobbs, Samuel;
Hickey, Mark;
Brabant, William;
Turkarslan, Serdar;
Price, Nathan D.;
Baliga, Nitin S.;
Sherman, David R.

Publication type:

Article

Bayesian transcriptome assembly.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 1, doi. 10.1186/s13059-014-0501-4

By:

Maretty, Lasse;
Sibbesen, Jonas Andreas;
Krogh, Anders

Publication type:

Article

mirMark: a site-level and UTR-level classifier for miRNA target prediction.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 1, doi. 10.1186/s13059-014-0500-5

By:

Menor, Mark;
Ching, Travers;
Xun Zhu;
Garmire, David;
Garmire, Lana X.

Publication type:

Article

Genetic adaptation of the human circadian clock to day-length latitudinal variations and relevance for affective disorders.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 1, doi. 10.1186/s13059-014-0499-7

By:

Forni, Diego;
Pozzoli, Uberto;
Cagliani, Rachele;
Tresoldi, Claudia;
Menozzi, Giorgia;
Riva, Stefania;
Guerini, Franca R.;
Comi, Giacomo P.;
Bolognesi, Elisabetta;
Bresolin, Nereo;
Clerici, Mario;
Sironi, Manuela

Publication type:

Article

Genomic mapping of the MHC transactivator CIITA using an integrated ChIP-seq and genetical genomics approach.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 1, doi. 10.1186/s13059-014-0494-z

By:

Daniel Wong;
Wanseon Lee;
Peter Humburg;
Seiko Makino;
Evelyn Lau;
Vivek Naranbhai;
Fairfax, Benjamin P.;
Kenneth Chan;
Plant, Katharine;
Knight, Julian C.

Publication type:

Article

Transcriptomic analysis reveals tomato genes whose expression is induced specifically during effector-triggered immunity and identifies the Epk1 protein kinase which is required for the host response to three bacterial effector proteins.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 1, doi. 10.1186/s13059-014-0492-1

By:

Pombo, Marina A.;
Yi Zheng;
Fernandez-Pozo, Noe;
Dunham, Diane M.;
Zhangjun Fei;
Martin, Gregory B.

Publication type:

Article

Genome-wide profiling of mouse RNA secondary structures reveals key features of the mammalian transcriptome.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 1, doi. 10.1186/s13059-014-0491-2

By:

Incarnato, Danny;
Neri, Francesco;
Anselmi, Francesca;
Oliviero, Salvatore

Publication type:

Article

MSEA: detection and quantification of mutation hotspots through mutation set enrichment analysis.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 1, doi. 10.1186/s13059-014-0489-9

By:

Peilin Jia;
Quan Wang;
Qingxia Chen;
Hutchinson, Katherine E.;
William Pao;
Zhongming Zhao

Publication type:

Article

Mobster: accurate detection of mobile element insertions in next generation sequencing data.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 2, doi. 10.1186/s13059-014-0488-x

By:

Djie Tjwan Thung;
Ligt, Joep de;
Vissers, Lisenka E. M.;
Steehouwer, Marloes;
Kroon, Mark;
de Vries, Petra;
Slagboom, Eline P.;
Kai Ye;
Veltman, Joris A.;
Hehir-Kwa, Jayne Y.

Publication type:

Article

Improved characterization of medically relevant fungi in the human respiratory tract using next-generation sequencing.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 1, doi. 10.1186/s13059-014-0487-y

By:

Bittinge, Kyle;
Charlson, Emily S.;
Loy, Elizabeth;
Shirley, David J.;
Haas, Andrew R.;
Laughlin, Alice;
Yanjie Yi;
Wu, Gary D.;
Lewis, James D.;
Frank, Ian;
Cantu, Edward;
Diamond, Joshua M.;
Christie, Jason D.;
Collman, Ronald G.;
Bushman, Frederic D.

Publication type:

Article

Topographical transcriptome mapping of the mouse medial ganglionic eminence by spatially-resolved RNA-seq.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 1, doi. 10.1186/s13059-014-0486-z

By:

Zechel, Sabrina;
Zajac, Pawel;
Lönnerberg, Peter;
Ibáñez, Carlos F.;
Linnarsson, Sten

Publication type:

Article

OncoCis: annotation of cis-regulatory mutations in cancer.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 1, doi. 10.1186/s13059-014-0485-0

By:

Perera, Dilmi;
Chacon, Diego;
Thoms, Julie A. I.;
Poulos, Rebecca C.;
Shlien, Adam;
Beck, Dominik;
Campbell, Peter J.;
Pimanda, John E.;
Wong, Jason W. H.

Publication type:

Article

Benchmarking mutation effect prediction algorithms using functionally validated cancer-related missense mutations.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 1, doi. 10.1186/s13059-014-0484-1

By:

Martelotto, Luciano G.;
Ng, Charlotte K. Y.;
De Filippo, Maria R.;
Yan Zhang;
Piscuoglio, Salvatore;
Lim, Raymond;
Ronglai Shen;
Norton, Larry;
Reis-Filho, Jorge S.;
Weigelt, Britta

Publication type:

Article

Methylomic profiling of human brain tissue supports a neurodevelopmental origin for schizophrenia.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 1, doi. 10.1186/s13059-014-0483-2

By:

Pidsley, Ruth;
Viana, Joana;
Hannon, Eilis;
Spiers, Helen H.;
Troakes, Claire;
Al-Saraj, Safa;
Mechawar, Naguib;
Turecki, Gustavo;
Schalkwyk, Leonard C.;
Bray, Nicholas J.;
Mill, Jonathan

Publication type:

Article

\Sequence specificity incompletely defines the genome-wide occupancy of Myc.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 1, doi. 10.1186/s13059-014-0482-3

By:

Jiannan Guo;
Tiandao Li;
Schipper, Joshua;
Nilson, Kyle A.;
Fordjour, Francis K.;
Cooper, Jeffrey J.;
Gordân, Raluca;
Price, David H.

Publication type:

Article

MUSIC: Identification of Enriched Regions in ChIP-Seq Experiments using a Mappability-Corrected Multiscale Signal Processing Framework.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 1, doi. 10.1186/s13059-014-0474-3

By:

Harmanci, Arif;
Rozowsky, Joel;
Gerstein, Mark

Publication type:

Article

Single Cell Genomics meeting in Stockholm: from single cells to cell types.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 496, doi. 10.1186/s13059-014-0496-x

By:

Scialdone, Antonio;
Achim, Kaia;
Marioni, John C

Publication type:

Article

Science is innate!

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 455, doi. 10.1186/s13059-014-0477-0

By:

Gilbert, Jack A

Publication type:

Article

Letting the data speak for themselves: a fully Bayesian approach to transcriptome assembly.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 498, doi. 10.1186/s13059-014-0498-8

By:

Schulz, Marcel H

Publication type:

Article

Crucial timing in schizophrenia: role of DNA methylation in early neurodevelopment

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 495, doi. 10.1186/s13059-014-0495-y

By:

Ryan, Joanne;
Saffery, Richard

Publication type:

Article

A systematic genetic screen identifies new factors influencing centromeric heterochromatin integrity in fission yeast.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 1, doi. 10.1186/s13059-014-0481-4

By:

Bayne, Elizabeth H.;
Bijos, Dominika A.;
White, Sharon A.;
de Lima Alves, Flavia;
Rappsilber, Juri;
Allshire, Robin C.

Publication type:

Article

FunSeq2: A framework for prioritizing noncoding regulatory variants in cancer.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 1, doi. 10.1186/s13059-014-0480-5

By:

Yao Fu;
Zhu Liu;
Shaoke Lou;
Bedford, Jason;
Xinmeng Jasmine Mu;
Yip, Kevin Y.;
Khurana, Ekta;
Gerstein, Mark

Publication type:

Article

Transcriptome-wide characterization of the eIF4A signature highlights plasticity in translation regulation.

Published in:

Genome Biology, 2014, v. 15, n. 10, p. 1, doi. 10.1186/s13059-014-0476-1

By:

Rubio, Claudia A.;
Weisburd, Benjamin;
Holderfield, Matthew;
Arias, Carolina;
Eric Fang;
DeRisi, Joseph L.;
Fanidi, Abdallah

Publication type:

Article