Works matching IS 14747596 AND DT 2014 AND VI 15 AND IP 1

Results: 45

A CRISPR design for next-generation antimicrobials.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 516, doi. 10.1186/s13059-014-0516-x

By:

Beisel, Chase L;
Gomaa, Ahmed A;
Barrangou, Rodolphe

Publication type:

Article

The RBPome: where the brains meet the brawn.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 402, doi. 10.1186/gb4153

By:

Attar, Naomi

Publication type:

Article

Next-generation plant science: putting big data to work.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 301, doi. 10.1186/gb4149

By:

Brauer, Elizabeth K;
Singh, Dharmendra K;
Popescu, Sorina C

Publication type:

Article

RNase-mediated protein footprint sequencing reveals protein-binding sites throughout the human transcriptome.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. R3, doi. 10.1186/gb-2014-15-1-r3

By:

Silverman, Ian M;
Fan Li;
Alexander, Anissa;
Goff, Loyal;
Trapnell, Cole;
Rinn, John L;
Gregory, Brian D

Publication type:

Article

RIP-seq analysis of eukaryotic Sm proteins identifies three major categories of Sm-containing ribonucleoproteins.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. R7, doi. 10.1186/gb-2014-15-1-r7

By:

Lu, Zhipeng;
Guan, Xiaojun;
Schmidt, Casey A;
Matera, A Gregory

Publication type:

Article

PAR-CLIP data indicate that Nrd1-Nab3-dependent transcription termination regulates expression of hundreds of protein coding genes in yeast.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. R8, doi. 10.1186/gb-2014-15-1-r8

By:

Webb, Shaun;
Hector, Ralph D;
Kudla, Grzegorz;
Granneman, Sander

Publication type:

Article

Mammalian conserved ADAR targets comprise only a small fragment of the human editosome.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. R5, doi. 10.1186/gb-2014-15-1-r5

By:

Pinto, Yishay;
Cohen, Haim Y;
Levanon, Erez Y

Publication type:

Article

Methods for comprehensive experimental identification of RNA-protein interactions.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 203, doi. 10.1186/gb4152

By:

McHugh, Colleen A;
Russell, Pamela;
Guttman, Mitchell

Publication type:

Article

Of RNA-binding proteins and their targets: interaction determines expression.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 102, doi. 10.1186/gb4155

By:

Zagrovic, Bojan

Publication type:

Article

Smaug destroys a huge treasure.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 101, doi. 10.1186/gb4156

By:

Götze, Michael;
Wahle, Elmar

Publication type:

Article

Global regulation of mRNA translation and stability in the early Drosophila embryo by the Smaug RNA-binding protein.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. R4, doi. 10.1186/gb-2014-15-1-r4

By:

Chen, Linan;
Dumelie, Jason G;
Li, Xiao;
Cheng, Matthew HK;
Yang, Zhiyong;
Laver, John D;
Siddiqui, Najeeb U;
Westwood, J Timothy;
Morris, Quaid;
Lipshitz, Howard D;
Smibert, Craig A

Publication type:

Article

‘Oming in on RNA–protein interactions.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 401, doi. 10.1186/gb4158

By:

Rinn, John L;
Ule, Jernej

Publication type:

Article

Extensive localization of long noncoding RNAs to the cytosol and mono- and polyribosomal complexes.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. R6, doi. 10.1186/gb-2014-15-1-r6

By:

van Heesch, Sebastiaan;
van Iterson, Maarten;
Jacobi, Jetse;
Boymans, Sander;
Essers, Paul B;
de Bruijn, Ewart;
Hao, Wensi;
MacInnes, Alyson W;
Cuppen, Edwin;
Simonis, Marieke

Publication type:

Article

Dynamic regulation of genome-wide pre-mRNA splicing and stress tolerance by the Sm-like protein LSm5 in Arabidopsis.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. R1, doi. 10.1186/gb-2014-15-1-r1

By:

Cui, Peng;
Zhang, Shoudong;
Ding, Feng;
Ali, Shahjahan;
Xiong, Liming

Publication type:

Article

Advancing the functional utility of PAR-CLIP by quantifying background binding to mRNAs and lncRNAs.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. R2, doi. 10.1186/gb-2014-15-1-r2

By:

Friedersdorf, Matthew B;
Keene, Jack D

Publication type:

Article

Identification of evolutionarily meaningful information within the mammalian RNA editing landscape.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 103, doi. 10.1186/gb4157

By:

Savva, Yiannis A;
Reenan, Robert A

Publication type:

Article

To be or not to be a piRNA: genomic origin and processing of piRNAs.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 204, doi. 10.1186/gb4154

By:

Le Thomas, Adrien;
Tóth, Katalin Fejes;
Aravin, Alexei A

Publication type:

Article

Exon identity crisis: disease-causing mutations that disrupt the splicing code.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 201, doi. 10.1186/gb4150

By:

Sterne-Weiler, Timothy;
Sanford, Jeremy R

Publication type:

Article

Seq and CLIP through the miRNA world.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 202, doi. 10.1186/gb4151

By:

Mittal, Nitish;
Zavolan, Mihaela

Publication type:

Article

Dissemination of scientific software with Galaxy ToolShed.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. R403, doi. 10.1186/gb4161

By:

Blankenberg, Daniel;
Von Kuster, Gregory;
Bouvier, Emil;
Baker, Dannon;
Afgan, Enis;
Stoler, Nicholas;
Taylor, James;
Nekrutenko, Anton

Publication type:

Article

Correction: The genome sequence of the ground tit Pseudopodoces humilis provides insights into its adaptation to high altitude.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. R33, doi. 10.1186/gb-2014-15-2-r33

By:

Qingle Cai;
Xiaoju Qian;
Yongshan Lang;
Yadan Luo;
Jiaohui Xu;
Shengkai Pan;
Yuanyuan Hui;
Caiyun Gou;
Yue Cai;
Meirong Hao;
Jinyang Zhao;
Songbo Wang;
Zhaobao Wang;
Xinming Zhang;
Rongjun He;
Jinchao Liu;
Longhai Luo;
Yingrui Li;
Jun Wang

Publication type:

Article

Aging of blood can be tracked by DNA methylation changes at just three CpG sites.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. R24, doi. 10.1186/gb-2014-15-2-r24

By:

Weidner, Carola Ingrid;
Qiong Lin;
Koch, Carmen Maike;
Eisele, Lewin;
Beier, Fabian;
Ziegler, Patrick;
Bauerschlag, Dirk Olaf;
Jöckel, Karl-Heinz;
Erbel, Raimund;
Mühleisen, Thomas Walter;
Zenke, Martin;
Brümmendorf, Tim Henrik;
Wagner, Wolfgang

Publication type:

Article

Genetic ancestry of participants in the National Children's Study.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. R22, doi. 10.1186/gb-2014-15-2-r22

By:

Smith, Erin N.;
Jepsen, Kristen;
Arias, Angelo D.;
Shepard, Peter J.;
Chambers, Christina D.;
Frazer, Kelly A.

Publication type:

Article

Genome-wide co-localization of Polycomb orthologs and their effects on gene expression in human fibroblasts.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. R23, doi. 10.1186/gb-2014-15-2-r23

By:

Pemberton, Helen;
Anderton, Emma;
Patel, Harshil;
Brookes, Sharon;
Chandler, Hollie;
Palermo, Richard;
Stock, Julie;
Rodriguez-Niedenführ, Marc;
Racek, Tomas;
de Breed, Lucas;
Stewart, Aengus;
Matthews, Nik;
Peters, Gordon

Publication type:

Article

Genome-wide analysis links emerin to neuromuscular junction activity in Caenorhabditis elegans.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. R21, doi. 10.1186/gb-2014-15-2-r21

By:

González-Aguilera, Cristina;
Ikegami, Kohta;
Ayuso, Cristina;
de Luis, Alberto;
Íñiguez, María;
Cabello, Juan;
Lieb, Jason D.;
Askjaer, Peter

Publication type:

Article

BayMeth: improved DNA methylation quantification for affinity capture sequencing data using a flexible Bayesian approach.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 1, doi. 10.1186/gb-2014-15-2-r35

By:

Riebler, Andrea;
Menigatti, Mirco;
Song, Jenny Z.;
Statham, Aaron L.;
Stirzaker, Clare;
Mahmud, Nadiya;
Mein, Charles A.;
Clark, Susan J.;
Robinson, Mark D.

Publication type:

Article

A multi-split mapping algorithm for circular RNA, splicing, trans-splicing, and fusion detection.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 1, doi. 10.1186/gb-2014-15-2-r34

By:

Hoffmann, Steve;
Otto, Christian;
Doose, Gero;
Tanzer, Andrea;
Langenberger, David;
Christ, Sabina;
Kunz, Manfred;
Holdt, Lesca;
Teupser, Daniel;
Hackermüeller, Jöerg;
Stadler, Peter F.

Publication type:

Article

KDM5B focuses H3K4 methylation near promoters and enhancers during embryonic stem cell self-renewal and differentiation.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 1, doi. 10.1186/gb-2014-15-2-r32

By:

Kidder, Benjamin L.;
Gangqing Hu;
Keji Zhao

Publication type:

Article

Accounting for cellular heterogeneity is critical in epigenome-wide association studies.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 1, doi. 10.1186/gb-2014-15-2-r31

By:

Jaffe, Andrew E.;
Irizarry, Rafael A.

Publication type:

Article

Using high-density DNA methylation arrays to profile copy number alterations.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 1

By:

Feber, Andrew;
Guilhamon, Paul;
Lechner, Matthias;
Fenton, Tim;
Wilson, Gareth A.;
Thirlwell, Christina;
Morris, Tiffany J.;
Flanagan, Adrienne M.;
Teschendorff, Andrew E.;
Kelly, John D.;
Beck, Stephan

Publication type:

Article

Voom: precision weights unlock linear model analysis tools for RNA-seq read counts.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 1, doi. 10.1186/gb-2014-15-2-r29

By:

Law, Charity W.;
Yunshun Chen;
Wei Shi;
Smyth, Gordon K.

Publication type:

Article

Alu elements shape the primate transcriptome by cis-regulation of RNA editing.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 1, doi. 10.1186/gb-2014-15-2-r28

By:

Daniel, Chammiran;
Silberberg, Gilad;
Behm, Mikaela;
Öhman, Marie

Publication type:

Article

The RNA-binding protein hnRNPLL induces a T cell alternative splicing program delineated by differential intron retention in polyadenylated RNA.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 1, doi. 10.1186/gb-2014-15-1-r26

By:

Cho, Vicky;
Yan Mei;
Sanny, Arleen;
Chan, Stephanie;
Enders, Anselm;
Bertram, Edward M.;
Tan, Andy;
Goodnow, Christopher C.;
Andrews, T. Daniel

Publication type:

Article

RNAmotifs: prediction of multivalent RNA motifs that control alternative splicing.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 1, doi. 10.1186/gb-2014-15-1-r20

By:

Cereda, Matteo;
Pozzoli, Uberto;
Rot, Gregor;
Juvan, Peter;
Schweitzer, Anthony;
Clark, Tyson;
Ule, Jernej

Publication type:

Article

MutPred Splice: machine learning-based prediction of exonic variants that disrupt splicing.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 1, doi. 10.1186/gb-2014-15-1-r19

By:

Mort, Matthew;
Sterne-Weiler, Tim;
Biao Li;
Ball, Edward V.;
Cooper, David N.;
Radivojac, Predrag;
Sanford, Jeremy R.;
Mooney, Sean D.

Publication type:

Article

PIPE-CLIP: a comprehensive online tool for CLIP-seq data analysis.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 1, doi. 10.1186/gb-2014-15-1-r18

By:

Beibei Chen;
Jonghyun Yun;
Min Soo Kim;
Mendell, Joshua T.;
Yang Xie

Publication type:

Article

GraphProt: modeling binding preferences of RNA-binding proteins.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 1, doi. 10.1186/gb-2014-15-1-r17

By:

Maticzka, Daniel;
Lange, Sita J.;
Costa, Fabrizio;
Backofen, Rolf

Publication type:

Article

CapR: revealing structural specificities of RNA-binding protein target recognition using CLIP-seq data.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 1, doi. 10.1186/gb-2014-15-1-r16

By:

Tsukasa Fukunaga;
Haruka Ozaki;
Goro Terai;
Kiyoshi Asai;
Wataru Iwasaki;
Hisanori Kiryu

Publication type:

Article

Differential protein occupancy profiling of the mRNA transcriptome.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 1, doi. 10.1186/gb-2014-15-1-r15

By:

Schueler, Markus;
Munschauer, Mathias;
Gregersen, Lea Haarup;
Finzel, Ana;
Loewer, Alexander;
Wei Chen;
Landthaler, Markus;
Dieterich, Christoph

Publication type:

Article

Dissecting the expression landscape of RNA-binding proteins in human cancers.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 1, doi. 10.1186/gb-2014-15-1-r14

By:

Kechavarzi, Bobak;
Chandra, Sarath

Publication type:

Article

Constitutive patterns of gene expression regulated by RNA-binding proteins.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 1, doi. 10.1186/gb-2014-15-1-r13

By:

Cirillo, Davide;
Marchese, Domenica;
Agostini, Federico;
Livi, Carmen Maria;
Botta-Orfila, Teresa;
Tartaglia, Gian Gaetano

Publication type:

Article

dCLIP: a computational approach for comparative CLIP-seq analyses.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 1, doi. 10.1186/gb-2014-15-1-r11

By:

Tao Wang;
Yang Xie;
Guanghua Xiao

Publication type:

Article

Genome-wide analysis of light-regulated alternative splicing mediated by photoreceptors in Physcomitrella patens.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 1, doi. 10.1186/gb-2014-15-1-r10

By:

Hshin-Ping Wu;
Yi-shin Su;
Hsiu-Chen Chen;
Yu-Rong Chen;
Chia-Chen Wu;
Wen-Dar Lin;
Shih-Long Tu

Publication type:

Article

Identification of distinct miRNA target regulation between breast cancer molecular subtypes using AGO2-PAR-CLIP and patient datasets.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 1, doi. 10.1186/gb-2014-15-1-r9

By:

Farazi, Thalia A.;
Ten Hoev, Jelle J.;
Brown, Miguel;
Mihailovic, Aleksandra;
Horlings, Hugo M.;
Tuschl, Thomas;
Wessels, Lodewyk F. A.;
Van de Vijver, Marc J.

Publication type:

Article

Global target mRNA specification and regulation by the RNA-binding protein ZFP36.

Published in:

Genome Biology, 2014, v. 15, n. 1, p. 1, doi. 10.1186/gb-2014-15-1-r12

By:

Mukherjee, Neelanjan;
Jacobs, Nicholas C.;
Hafner, Markus;
Kennington, Elizabeth A.;
Nusbaum, Jeffrey D.;
Tuschl, Thomas;
Blackshear, Perry J.;
Ohler, Uwe

Publication type:

Article