Works matching IS 14726807 AND DT 2013 AND VI 13

Results: 44

Structure of the S100A4/myosin-IIA complex.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-31

By:

Ramagopal, Udupi A.;
Dulyaninova, Natalya G.;
Varney, Kristen M.;
Wilder, Paul T.;
Nallamsetty, Sridevi;
Brenowitz, Michael;
Weber, David J.;
Almo, Steven C.;
Bresnick, Anne R.

Publication type:

Article

Crystal structure of the γ-hydroxymuconic semialdehyde dehydrogenase from Pseudomonas sp. strain WBC-3, a key enzyme involved in para- Nitrophenol degradation.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-30

By:

Jing Su;
Cong Zhang;
Jun-Jie Zhang;
Tiandi Wei;
Deyu Zhu;
Ning-Yi Zhou;
Li chuan Gu

Publication type:

Article

Effect of intracellular loop 3 on intrinsic dynamics of human β<sub>2</sub>-adrenergic receptor.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-29

By:

Ozcan, Ozer;
Uyar, Arzu;
Doruker, Pemra;
Akten, Ebru Demet

Publication type:

Article

The crystal structures of the tri-functional Chloroflexus aurantiacus and bi-functional Rhodobacter sphaeroides malyl-CoA lyases and comparison with CitE-like superfamily enzymes and malate synthases.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-28

By:

Zarzycki, Jan;
Kerfeld, Cheryl A.

Publication type:

Article

Structural insights into Resveratrol's antagonist and partial agonist actions on estrogen receptor alpha.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-27

By:

Chakraborty, Sandipan;
Levenson, Anait S.;
Biswas, Pradip K.

Publication type:

Article

Type I pyridoxal 5[prime]-phosphate dependent enzymatic domains embedded within multimodular nonribosomal peptide synthetase and polyketide synthase assembly lines.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-26

By:

Milano, Teresa;
Paiardini, Alessandro;
Grgurina, Ingeborg;
Pascarella, Stefano

Publication type:

Article

gEMpicker: A Highly Parallel GPU-Accelerated Particle Picking Tool for Cryo-Electron Microscopy.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-25

By:

Thai V. Hoang;
Xavier Cavin;
Schultz, Patrick;
Ritchie, David W.

Publication type:

Article

Quantification of the impact of PSI:Biology according to the annotations of the determined structures.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-24

By:

DePietro, Paul J.;
Julfayev, Elchin S.;
McLaughlin, William A.

Publication type:

Article

Structural and biochemical characterization of the essential DsbA-like disulfide bond forming protein from Mycobacterium tuberculosis.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-23

By:

Chim, Nicholas;
Harmston, Christine A.;
Guzman, David J.;
Goulding, Celia W.

Publication type:

Article

Structural and functional characterisation of the methionine adenosyltransferase from Thermococcus kodakarensis.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-22

By:

Schlesier, Julia;
Siegrist, Jutta;
Gerhardt, Stefan;
Erb, Annette;
Blaesi, Simone;
Richte, Michael;
Einsle, Oliver;
Andexer, Jennifer N.

Publication type:

Article

An analysis of oligomerization interfaces in transmembrane proteins.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-21

By:

Duarte, Jose M.;
Biyani, Nikhil;
Baskaran, Kumaran;
Capitani, Guido

Publication type:

Article

Defining structural and evolutionary modules in proteins: a community detection approach to explore sub-domain architecture.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-20

By:

Hleap, Jose Sergio;
Susko, Edward;
Blouin, Christian

Publication type:

Article

Crystal structure of c5321: a protective antigen present in uropathogenic Escherichia coli strains displaying an SLR fold.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-19

By:

Urosev, Dunja;
Ferrer-Navarro, Mario;
Pastorello, Ilaria;
Cartocci, Elena;
Costenaro, Lionel;
Zhulenkovs, Dmitrijs;
Maréchal, Jean-Didier;
Leonchiks, Ainars;
Reverter, David;
Serino, Laura;
Soriani, Marco;
Daura, Xavier

Publication type:

Article

Short tandem repeats in the inhibitory domain of the mineralocorticoid receptor: prediction of a β-solenoid structure.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-17

By:

Vlassi, Metaxia;
Brauns, Katharina;
Andrade-Navarro, Miguel A.

Publication type:

Article

Molecular details of ligand selectivity determinants in a promiscuous β-glucan periplasmic binding protein.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-18

By:

Munshi, Parthapratim;
Stanley, Christopher B.;
Ghimire-Rijal, Sudipa;
Xun Lu;
Myles, Dean A.;
Cuneo, Matthew J.

Publication type:

Article

Detection of persistent organic pollutants binding modes with androgen receptor ligand binding domain by docking and molecular dynamics.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-16

By:

Xian Jin Xu;
Ji Guo Su;
Bizzarri, Anna Rita;
Cannistraro, Salvatore;
Ming Liu;
Yi Zeng;
Wei Zu Chen;
Cun Xin Wang

Publication type:

Article

Molecular dynamics simulations on the Tre1 G protein-coupled receptor: exploring the role of the arginine of the NRY motif in Tre1 structure.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-15

By:

Pruitt, Margaret M.;
Lamm, Monica H.;
Coffman, Clark R.

Publication type:

Article

Crosslinking and mass spectrometry suggest that the isolated NTD domain dimer of Moloney murine leukemia virus integrase adopts a parallel arrangement in solution.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-14

By:

Henriquez, Daniel R.;
Caifeng Zhao;
Haiyan Zheng;
Arbildua, José J.;
Acevedo, Mónica L.;
Roth, Monica J.;
Leon, Oscar

Publication type:

Article

Crystal structure of signal regulatory protein gamma (SIRPγ) in complex with an antibody Fab fragment.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-13

By:

Nettleship, Joanne E.;
Ren, Jingshan;
Scott, David J.;
Rahman, Nahid;
Hatherley, Deborah;
Yuguang Zhao;
Stuart, David I.;
Barclay, A. Neil;
Owens, Raymond J.

Publication type:

Article

The UmuC subunit of the E. coli DNA polymerase V shows a unique interaction with the β-clamp processivity factor.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-12

By:

Patoli, Atif A.;
Winter, Jody A.;
Bunting, Karen A.

Publication type:

Article

Crystal structure of the C-terminal globular domain of the third paralog of the Archaeoglobus fulgidus oligosaccharyltransferases.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-11

By:

Matsumoto, Shunsuke;
Shimada, Atsushi;
Kohda, Daisuke

Publication type:

Article

Crystal structure of putative CbiT from Methanocaldococcus jannaschii: an intermediate enzyme activity in cobalamin (vitamin B<sub>12</sub>) biosynthesis.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-10

By:

Padmanabhan, Balasundaram;
Yokoyama, Shigeyuki;
Bessho, Yoshitaka

Publication type:

Article

Helical ambivalency induced by point mutations.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-9

By:

Bhattacharjee, Nicholus;
Biswas, Parbati

Publication type:

Article

A structural role for the PHP domain in E. coli DNA polymerase III.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-8

By:

Barros, Tiago;
Guenther, Joel;
Kelch, Brian;
Anaya, Jordan;
Prabhakar, Arjun;
O'Donnell, Mike;
Kuriyan, John;
Lamers, Meindert H.

Publication type:

Article

Localization of putative binding sites for cyclic guanosine monophosphate and the anti-cancer drug 5-fluoro-2'-deoxyuridine-5'-monophosphate on ABCC11 in silico models.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-7

By:

Honorat, Mylène;
Terreux, Raphaël;
Falson, Pierre;
Di Pietro, Attilio;
Dumontet, Charles;
Payen, Lea

Publication type:

Article

Structural and functional studies of S-adenosyl-L-methionine binding proteins: a ligand-centric approach.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-6

By:

Gana, Rajaram;
Rao, Shruti;
Huang, Hongzhan;
Cathy Wu;
Vasudevan, Sona

Publication type:

Article

Structural basis for hypermodification of the wobble uridine in tRNA by bifunctional enzyme MnmC.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-5

By:

Kim, Jungwook;
Almo, Steven C.

Publication type:

Article

Disturbance of DNA conformation by the binding of testosterone-based platinum drugs via groove-face and intercalative interactions: a molecular dynamics simulation study.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-4

By:

Shanshan Cui;
Yan Wang;
Guangju Chen

Publication type:

Article

The role of Cysteine 6.47 in class A GPCRs.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-3

By:

Olivella, Mireia;
Caltabiano, Gianluigi;
Cordomí, Arnau

Publication type:

Article

Designing and benchmarking the MULTICOM protein structure prediction system.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-2

By:

Jilong Li;
Xin Deng;
Eickholt, Jesse;
Jianlin Cheng

Publication type:

Article

Annual acknowledgement of manuscript reviewers.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-1

By:

Harold, Simon

Publication type:

Article

BioSuper: A web tool for the superimposition of biomolecules and assemblies with rotational symmetry.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-32

By:

Rueda, Manuel;
Orozco, Modesto;
Totrov, Maxim;
Abagyan, Ruben

Publication type:

Article

Unbiased, scalable sampling of protein loop conformations from probabilistic priors.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-S1-S9

By:

Yajia Zhang;
Hauser, Kris

Publication type:

Article

Elucidating the ensemble of functionally-relevant transitions in protein systems with a robotics-inspired method.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-S1-S8

By:

Molloy, Kevin;
Shehu, Amarda

Publication type:

Article

A conservation and biophysics guided stochastic approach to refining docked multimeric proteins.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-S1-S7

By:

Akbal-Delibas, Bahar;
Haspel, Nurit

Publication type:

Article

A conservation and rigidity based method for detecting critical protein residues.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-S1-S6

By:

Akbal-Delibas, Bahar;
Jagodzinski, Filip;
Haspel, Nurit

Publication type:

Article

Estimating loop length from CryoEM images at medium resolutions.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-S1-S5

By:

McKnight, Andrew;
Dong Si;
Al Nasr, Kamal;
Chernikov, Andrey;
Chrisochoides, Nikos;
Jing He

Publication type:

Article

A population-based evolutionary search approach to the multiple minima problem in de novo protein structure prediction.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-S1-S4

By:

Saleh, Sameh;
Olson, Brian;
Shehu, Amarda

Publication type:

Article

Modeling protein conformational transitions by a combination of coarse-grained normal mode analysis and robotics-inspired methods.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-S1-S2

By:

Al-Bluwi, Ibrahim;
Vaisset, Marc;
Siméon, Thierry;
Cortés, Juan

Publication type:

Article

An aggregate analysis of many predicted structures to reduce errors in protein structure comparison caused by conformational flexibility.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-S1-S10

By:

Godshall, Brian G.;
Yisheng Tang;
Wenjie Yang;
Chen, Brian Y.

Publication type:

Article

Four-body atomic potential for modeling protein-ligand binding affinity: application to enzyme-inhibitor binding energy prediction.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-S1-S1

By:

Masso, Majid

Publication type:

Article

The 6th Computational Structural Bioinformatics Workshop.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-S1-I1

By:

Jing He;
Shehu, Amarda;
Haspel, Nurit;
Brian Chen

Publication type:

Article

Enhancement of accuracy and efficiency for RNA secondary structure prediction by sequence segmentation and MapReduce.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-S1-S3

By:

Boyu Zhang;
Yehdego, Daniel T.;
Johnson, Kyle L.;
Ming-Ying Leung;
Taufer, Michela

Publication type:

Article

DINC: A new AutoDock-based protocol for docking large ligands.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-S1-S11

By:

Dhanik, Ankur;
McMurray, John S.;
Kavraki, Lydia E.

Publication type:

Article