Works matching IS 14726807 AND DT 2010 AND VI 10

Results: 52

Sequence periodicity in nucleosomal DNA and intrinsic curvature.

Published in:

BMC Structural Biology, 2010, v. 10, p. 1, doi. 10.1186/1472-6807-10-S1-S8

By:

Nair, T. Murlidharan

Publication type:

Article

Protein structure determination via an efficient geometric build-up algorithm.

Published in:

BMC Structural Biology, 2010, v. 10, p. 1, doi. 10.1186/1472-6807-10-S1-S7

By:

Davis, Robert T.;
Ernst, Claus;
Di Wu

Publication type:

Article

Mining for the antibody-antigen interacting associations that predict the B cell epitopes.

Published in:

BMC Structural Biology, 2010, v. 10, p. 1, doi. 10.1186/1472-6807-10-S1-S6

By:

Liang Zhao;
Jinyan Li

Publication type:

Article

Discrimination of thermophilic and mesophilic proteins.

Published in:

BMC Structural Biology, 2010, v. 10, p. 1, doi. 10.1186/1472-6807-10-S1-S5

By:

Taylor, Todd J.;
Vaisman, Iosif I.

Publication type:

Article

Structural interpretation of protein-protein interaction network.

Published in:

BMC Structural Biology, 2010, v. 10, p. 1, doi. 10.1186/1472-6807-10-S1-S4

By:

Katebi, Ataur R.;
Kloczkowski, Andrzej;
Jernigan, Robert L.

Publication type:

Article

Generalized spring tensor models for protein fluctuation dynamics and conformation changes.

Published in:

BMC Structural Biology, 2010, v. 10, p. 1, doi. 10.1186/1472-6807-10-S1-S3

By:

Tu-Liang Lin;
Guang Song

Publication type:

Article

Prediction of protein long-range contacts using an ensemble of genetic algorithm classifiers with sequence profile centers.

Published in:

BMC Structural Biology, 2010, v. 10, p. 1, doi. 10.1186/1472-6807-10-S1-S2

By:

Peng Chen;
Jinyan Li

Publication type:

Article

Tracing conformational changes in proteins.

Published in:

BMC Structural Biology, 2010, v. 10, p. 1, doi. 10.1186/1472-6807-10-S1-S1

By:

Haspel, Nurit;
Moll, Mark;
Baker, Matthew L.;
Chiu, Wah;
Kavraki, Lydia E.

Publication type:

Article

The 3rd Computational Structural Bioinformatics Workshop.

Published in:

BMC Structural Biology, 2010, v. 10, p. 1, doi. 10.1186/1472-6807-10-S1-I1

By:

Jing He;
Di Wu

Publication type:

Article

The maize ALDH protein superfamily: linking structural features to functional specificities.

Published in:

BMC Structural Biology, 2010, v. 10, p. 43, doi. 10.1186/1472-6807-10-43

By:

Jimenez-Lopez, Jose C.;
Gachomo, Emma W.;
Seufferheld, Manfredo J.;
Kotchoni, Simeon O.

Publication type:

Article

Investigating dynamic and energetic determinants of protein nucleic acid recognition: qanalysis of the zinc finger zif268-DNA complexes.

Published in:

BMC Structural Biology, 2010, v. 10, p. 42, doi. 10.1186/1472-6807-10-42

By:

Torella, Rubben;
Moroni, Elisabetta;
Caselle, Michele;
Morra, Giulia;
Colombo, Giorgio

Publication type:

Article

Modulation of inhibitory activity of xylanase - α-amylase inhibitor protein (XAIP): binding studies and crystal structure determination ofXAIP- II from Scadoxus multiflorus at 1.2 Å resolution.

Published in:

BMC Structural Biology, 2010, v. 10, p. 41, doi. 10.1186/1472-6807-10-41

By:

Kumar, Sanjit;
Singh, Nagendra;
Mishra, Biswajit;
Dube, Divya;
Sinha, Mau;
Singh, S. Baskar;
Dey, Sharmistha;
Kaur, Punit;
Sharma, Sujata;
Singh, Tej P.

Publication type:

Article

Designing coarse grained-and atom basedpotentials for protein-protein docking.

Published in:

BMC Structural Biology, 2010, v. 10, p. 40, doi. 10.1186/1472-6807-10-40

By:

Tobi, Dror

Publication type:

Article

CoNSEnsX: an ensemble view of protein structures and NMR-derived experimental data.

Published in:

BMC Structural Biology, 2010, v. 10, p. 39, doi. 10.1186/1472-6807-10-39

By:

Ángyán, Annamária F;
Szappanos, Balázs;
Perczel, András;
Gáspári, Zoltán

Publication type:

Article

New insight into the dynamic properties and the active site architecture of H-Ras p21 revealed by X-ray crystallography at very high resolution.

Published in:

BMC Structural Biology, 2010, v. 10, p. 38, doi. 10.1186/1472-6807-10-38

By:

Klink, Björn U.;
Scheidig, Axel J.

Publication type:

Article

DockAnalyse: an application for the analysis of protein-protein interactions.

Published in:

BMC Structural Biology, 2010, v. 10, p. 37, doi. 10.1186/1472-6807-10-37

By:

Amela, Isaac;
Delicado, Pedro;
Gómez, Antonio;
Bonàs, Sílvia;
Querol, Enrique;
Cedano, Juan

Publication type:

Article

Analysis of binding properties and specificity through identification of the interface forming residues (IFR) for serine proteases in silico docked to different inhibitors.

Published in:

BMC Structural Biology, 2010, v. 10, p. 36, doi. 10.1186/1472-6807-10-36

By:

Ribeiro, Cristina;
Togawa, Roberto C.;
Neshich, Izabella A. P.;
Mazoni, Ivan;
Mancini, Adauto L.;
de Melo Minardi, Raquel C.;
da Silveira, Carlos H.;
Jardine, José G.;
Santoro, Marcelo M.;
Neshich, Goran

Publication type:

Article

Investigation and improvement of DNA cleavage models of polyamide + Cu(II) nuclease + OOH- ligands bound to DNA.

Published in:

BMC Structural Biology, 2010, v. 10, p. 35, doi. 10.1186/1472-6807-10-35

By:

Hongwei Yue;
Yanyan Zhu;
Yan Wang;
Guangju Chen

Publication type:

Article

Prediction and analysis of the modular structure of cytochrome P450 monooxygenases.

Published in:

BMC Structural Biology, 2010, v. 10, p. 34, doi. 10.1186/1472-6807-10-34

By:

Sirim, Demet;
Widmann, Michael;
Wagner, Florian;
Pleiss, Jürgen

Publication type:

Article

A mutational analysis and molecular dynamics simulation of quinolone resistance proteins QnrA1 and QnrC from Proteus mirabilis.

Published in:

BMC Structural Biology, 2010, v. 10, p. 33, doi. 10.1186/1472-6807-10-33

By:

Qinglan Guo;
Jingwei Weng;
Xiaogang Xu;
Minghua Wang;
Xiaoying Wang;
Xinyu Ye;
Wenning Wang;
Minggui Wang

Publication type:

Article

Relating the shape of protein binding sites to binding affinity profiles: is there an association?

Published in:

BMC Structural Biology, 2010, v. 10, p. 32, doi. 10.1186/1472-6807-10-32

By:

Simon, Zoltán;
Vigh-Smeller, Margit;
Peragovics, Ágnes;
Csukly, Gábor;
Zahoránszky-Kőhalmi, Gergely;
Rauscher, Anna Á;
Jelinek, Balázs;
Hári, Péter;
Bitter, István;
Málnási-Csizmadia, András;
Czobor, Pál

Publication type:

Article

The intriguing Cyclophilin A-HIV-1 Vpr interaction: prolyl cis/trans isomerisation catalysis and specific binding.

Published in:

BMC Structural Biology, 2010, v. 10, p. 31, doi. 10.1186/1472-6807-10-31

By:

Solbak, Sara M.;
Reksten, Tove R.;
Wray, Victor;
Bruns, Karsten;
Horvli, Ole;
Raae, Arnt J.;
Henklein, Petra;
Henklein, Peter;
Röder, Rene;
Mitzner, David;
Schubert, Ulrich;
Fossen, Torgils

Publication type:

Article

Molecular determinants of improved cathepsin B inhibition by new cystatins obtained by DNA shuffling.

Published in:

BMC Structural Biology, 2010, v. 10, p. 30, doi. 10.1186/1472-6807-10-30

By:

Valadares, Napoleão F.;
Dellamano, Márcia;
Soares-Costa, Andrea;
Henrique-Silva, Flávio;
Garratt, Richard C.

Publication type:

Article

Position-specific propensities of amino acids in the β-strand.

Published in:

BMC Structural Biology, 2010, v. 10, p. 29, doi. 10.1186/1472-6807-10-29

By:

Bhattacharjee, Nicholus;
Biswas, Parbati

Publication type:

Article

Mechanisms underlying dioxygen reduction in laccases. Structural and modelling studies focusing on proton transfer.

Published in:

BMC Structural Biology, 2010, v. 10, p. 28, doi. 10.1186/1472-6807-10-28

By:

Bento, Isabel;
Silva, Catarina S.;
Zhenjia Chen;
Martins, Lígia O.;
Lindley, Peter F.;
Soares, Cláudio M.

Publication type:

Article

Elucidation of the conformational free energylandscape in H.pylori LuxS and its implications tocatalysis.

Published in:

BMC Structural Biology, 2010, v. 10, p. 27, doi. 10.1186/1472-6807-10-27

By:

Bhattacharyya, Moitrayee;
Vishveshwara, Saraswathi

Publication type:

Article

Comparing interfacial dynamics in protein-proteincomplexes: an elastic network approach.

Published in:

BMC Structural Biology, 2010, v. 10, p. 26, doi. 10.1186/1472-6807-10-26

By:

Zen, Andrea;
Micheletti, Cristian;
Keskin, Ozlem;
Nussinov, Ruth

Publication type:

Article

Molecular basis for defect in Alix-bindingby alternatively spliced isoform of ALG-2(ALG-2<sup>ΔGF122</sup>) and structural roles of F122 in target recognition.

Published in:

BMC Structural Biology, 2010, v. 10, p. 25

By:

Inuzuka, Tatsutoshi;
Suzuki, Hironori;
Kawasaki, Masato;
Shibata, Hideki;
Wakatsuki, Soichi;
Maki, Masatoshi

Publication type:

Article

Systematic analysis of short internal indels andtheir impact on protein folding.

Published in:

BMC Structural Biology, 2010, v. 10, p. 24, doi. 10.1186/1472-6807-10-24

By:

RyangGuk Kim;
Jun-tao Guo

Publication type:

Article

Structural motif screening reveals a novel,conserved carbohydrate-binding surface in thepathogenesis-related protein PR-5d.

Published in:

BMC Structural Biology, 2010, v. 10, p. 23, doi. 10.1186/1472-6807-10-23

By:

Doxey, Andrew C.;
Zhenyu Cheng;
Moffatt, Barbara A.;
McConkey, Brendan J.

Publication type:

Article

Prediction of protein motions from amino acidsequence and its application to protein-proteininteraction.

Published in:

BMC Structural Biology, 2010, v. 10, p. 20, doi. 10.1186/1472-6807-10-20

By:

Hirose, Shuichi;
Yokota, Kiyonobu;
Kuroda, Yutaka;
Wako, Hiroshi;
Endo, Shigeru;
Kanai, Satoru;
Noguchi, Tamotsu

Publication type:

Article

Improving predicted protein loop structure ranking using a Pareto-optimality consensus method.

Published in:

BMC Structural Biology, 2010, v. 10, p. 22, doi. 10.1186/1472-6807-10-22

By:

Yaohang Li;
Rata, Ionel;
See-wing Chiu;
Jakobsson, Eric

Publication type:

Article

Evidence for alternative quaternary structure in a bacterial Type III secretion system chaperone.

Published in:

BMC Structural Biology, 2010, v. 10, p. 21, doi. 10.1186/1472-6807-10-21

By:

Barta, Michael L.;
Lingling Zhang;
Picking, Wendy L.;
Geisbrecht, Brian V.

Publication type:

Article

A kinesin motor in a force-producing conformation.

Published in:

BMC Structural Biology, 2010, v. 10, p. 19, doi. 10.1186/1472-6807-10-19

By:

Heuston, Elisabeth;
Bronner, C. Eric;
Kull, F. Jon;
Endow, Sharyn A.

Publication type:

Article

Novel topological descriptors for analyzing biological networks.

Published in:

BMC Structural Biology, 2010, v. 10, p. 18, doi. 10.1186/1472-6807-10-18

By:

Dehmer, Matthias M.;
Barbarini, Nicola N.;
Varmuza, Kurt K.;
Graber, Armin A.

Publication type:

Article

Prediction of protein-protein interactions in dengue virus coat proteins guided by low resolution cryoEM structures.

Published in:

BMC Structural Biology, 2010, v. 10, p. 17, doi. 10.1186/1472-6807-10-17

By:

Gadkari, Rupali A.;
Srinivasan, Narayanaswamy

Publication type:

Article

Solution structure of the human signaling protein RACK1.

Published in:

BMC Structural Biology, 2010, v. 10, p. 15, doi. 10.1186/1472-6807-10-15

By:

Gonçalves, Kaliandra A.;
Borges, Julio C.;
Silva, Julio C.;
Papa, Priscila F.;
Bressan, Gustavo C.;
Torriani, Iris L.;
Kobarg, Jörg

Publication type:

Article

Active site plasticity revealed from the structure of the enterobacterial N-ribohydrolase RihA bound to a competitive inhibitor.

Published in:

BMC Structural Biology, 2010, v. 10, p. 14, doi. 10.1186/1472-6807-10-14

By:

Garau, Gianpiero;
Muzzolini, Laura;
Tornaghi, Paola;
Degano, Massimo

Publication type:

Article

Structural definition and substrate specificity of theS28 protease family: the crystal structure of humanprolylcarboxypeptidase.

Published in:

BMC Structural Biology, 2010, v. 10, p. 16, doi. 10.1186/1472-6807-10-16

By:

Soisson, Stephen M.;
Patel, Sangita B.;
Abeywickrema, Pravien D.;
Byrne, Noel J.;
Diehl, Ronald E.;
Hall, Dawn L.;
Ford, Rachael E.;
Reid, John C.;
Rickert, Keith W.;
Shipman, Jennifer M.;
harma, Sujata;
Lumb, Kevin J.

Publication type:

Article

Novel structural features in two ZHXhomeodomains derived from a systematic study ofsingle and multiple domains.

Published in:

BMC Structural Biology, 2010, v. 10, p. 13, doi. 10.1186/1472-6807-10-13

By:

Bird, Louise E.;
Ren, Jingshan;
Nettleship, Joanne E.;
Folkers, Gert E.;
Owens, Raymond J.;
Stammers, David K.

Publication type:

Article

Progesterone modulation of transmembranehelix-helix interactions between the α-subunit ofNa/K-ATPase and phospholipidN-methyltransferase in the oocyte plasmamembrane.

Published in:

BMC Structural Biology, 2010, v. 10, p. 12, doi. 10.1186/1472-6807-10-12

By:

Morrill, Gene A.;
Kostellow, Adele B.;
Askari, Amir

Publication type:

Article

Elastic network model of allosteric regulation inprotein kinase PDK1.

Published in:

BMC Structural Biology, 2010, v. 10, p. 11, doi. 10.1186/1472-6807-10-11

By:

Williams, Gareth

Publication type:

Article

The structure of a reduced form of OxyR fromNeisseria meningitidis.

Published in:

BMC Structural Biology, 2010, v. 10, p. 10, doi. 10.1186/1472-6807-10-10

By:

Sainsbury, Sarah;
Ren, Jingshan;
Nettleship, Joanne E.;
Saunders, Nigel J.;
Stuart, David I.;
Owens, Raymond J.

Publication type:

Article

Assessing the structural conservation of protein pockets to study functional and allosteric sites: implications for drug discovery.

Published in:

BMC Structural Biology, 2010, v. 10, p. 9, doi. 10.1186/1472-6807-10-9

By:

Panjkovich, Alejandro;
Daura, Xavier

Publication type:

Article

Forced unbinding of GPR17 ligands from wild type and R255I mutant receptor models through a computational approach.

Published in:

BMC Structural Biology, 2010, v. 10, p. 8, doi. 10.1186/1472-6807-10-8

By:

Parravicini, Chiara;
Abbracchio, Maria P.;
Fantucci, Piercarlo;
Ranghino, Graziella

Publication type:

Article

Structural investigation of zymogenic and activated forms of human blood coagulation factor VIII: a computational molecular dynamics study.

Published in:

BMC Structural Biology, 2010, v. 10, p. 7, doi. 10.1186/1472-6807-10-7

By:

Venkateswarlu, Divi

Publication type:

Article

Computational analysis and determination of a highly conserved surface exposed segment in H5N1 avian flu and H1N1 swine fluneuraminidase.

Published in:

BMC Structural Biology, 2010, v. 10, p. 6, doi. 10.1186/1472-6807-10-6

By:

Ghosh, Ambarnil;
Nandy, Ashesh;
Nandy, Papiya

Publication type:

Article

Modeling of loops in proteins: a multi-method approach.

Published in:

BMC Structural Biology, 2010, v. 10, p. 5, doi. 10.1186/1472-6807-10-5

By:

Jamroz, Michal;
Kolinski, Andrzej

Publication type:

Article

Identification of recurring protein structure microenvironments and discovery of novel functional sites around CYS residues.

Published in:

BMC Structural Biology, 2010, v. 10, p. 4, doi. 10.1186/1472-6807-10-4

By:

Shirley Wu;
Tianyun Liu;
Altman, Russ B.

Publication type:

Article

Molecular modeling of the reductase domain to elucidate the reaction mechanism of reduction of peptidyl thioester into its corresponding alcohol in non-ribosomal peptide synthetases.

Published in:

BMC Structural Biology, 2010, v. 10, p. 1, doi. 10.1186/1472-6807-10-1

By:

Manavalan, Balachandran;
Murugapiran, Senthil K.;
Gwang Lee;
Sangdun Choi

Publication type:

Article