Works matching IS 14726807 AND DT 2008 AND VI 8

Results: 55

Analysis on conservation of disulphide bonds and their structural features in homologous protein domain families.

Published in:: BMC Structural Biology, 2008, v. 8, p. 55, doi. 10.1186/1472-6807-8-55
Publication type:: Article

PDBalert: automatic, recurrent remote homology tracking and protein structure prediction.

Published in:: BMC Structural Biology, 2008, v. 8, p. 51, doi. 10.1186/1472-6807-8-51
Publication type:: Article

Ligand-induced conformational changes in a thermophilic ribose-binding protein.

Published in:: BMC Structural Biology, 2008, v. 8, p. 50, doi. 10.1186/1472-6807-8-50
Publication type:: Article

HOLLOW: Generating Accurate Representations of Channel and Interior Surfaces in Molecular Structures.

Published in:: BMC Structural Biology, 2008, v. 8, p. 49, doi. 10.1186/1472-6807-8-49
Publication type:: Article

Type II restriction endonuclease R.Hpy188I belongs to the GIY-YIG nuclease superfamily, but exhibits an unusual active site.

Published in:: BMC Structural Biology, 2008, v. 8, p. 48, doi. 10.1186/1472-6807-8-48
Publication type:: Article

A knowledge-based structure-discriminating function that requires only main-chain atom coordinates.

Published in:: BMC Structural Biology, 2008, v. 8, p. 46, doi. 10.1186/1472-6807-8-46
Publication type:: Article

Protein Functional Surfaces: Global Shape Matching and Local Spatial Alignments of Ligand Binding Sites.

Published in:: BMC Structural Biology, 2008, v. 8, p. 45, doi. 10.1186/1472-6807-8-45
Publication type:: Article

Flanking p10 contribution and sequence bias in matrix based epitope prediction: revisiting the assumption of independent binding pockets.

Published in:: BMC Structural Biology, 2008, v. 8, p. 44, doi. 10.1186/1472-6807-8-44
Publication type:: Article

Quantifying information transfer by protein domains: Analysis of the Fyn SH2 domain structure.

Published in:: BMC Structural Biology, 2008, v. 8, p. 43, doi. 10.1186/1472-6807-8-43
Publication type:: Article

The crystal structure of the catalytic domain of a eukaryotic guanylate cyclase.

Published in:: BMC Structural Biology, 2008, v. 8, p. 42, doi. 10.1186/1472-6807-8-42
Publication type:: Article

A method for probabilistic mapping between protein structure and function taxonomies through cross training.

Published in:: BMC Structural Biology, 2008, v. 8, p. 40, doi. 10.1186/1472-6807-8-40
Publication type:: Article

Knottin cyclization: impact on structure and dynamics.

Published in:: BMC Structural Biology, 2008, v. 8, p. 54, doi. 10.1186/1472-6807-8-54
Publication type:: Article

Residue contact-count potentials are as effective as residue-residue contact-type potentials for ranking protein decoys.

Published in:: BMC Structural Biology, 2008, v. 8, p. 53, doi. 10.1186/1472-6807-8-53
Publication type:: Article

SELECTpro: effective protein model selection using astructure-based energy function resistant to BLUNDERs.

Published in:: BMC Structural Biology, 2008, v. 8, p. 52, doi. 10.1186/1472-6807-8-52
Publication type:: Article

LRRML: a conformational database and an XML description ofleucine-rich repeats (LRRs).

Published in:: BMC Structural Biology, 2008, v. 8, p. 47, doi. 10.1186/1472-6807-8-47
Publication type:: Article

Modeling structure and flexibility of Candida antarctica lipase B in organic solvents.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-9

By:

Trodler, Peter;
Pleiss, Jürgen

Publication type:

Article

Structural basis of GC-1 selectivity for thyroid hormone receptor isoforms.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-8

By:

Bleicher, Lucas;
Aparicio, Ricardo;
Nunes, Fabio M.;
Martinez, Leandro;
Gomes Dias, Sandra M.;
Figueira, Ana Carolina Migliorini;
Santos, Maria Auxiliadora Morim;
Venturelli, Walter H.;
Da Silva, Rosangela;
Donate, Paulo Marcos;
Neves, Francisco A. R.;
Simeoni, Luiz A.;
Baxter, John D.;
Webb, Paul;
Skaf, Munir S.;
Polikarpov, Igor

Publication type:

Article

Comparative modelling by restraint-based conformational sampling.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-7

By:

Furnham, Nicholas;
De Bakker, Paul I. W.;
Gore, Swanand;
Burke, David F.;
Blundell, Tom L.

Publication type:

Article

Crystal structures of a purple acid phosphatase, representing different steps of this enzyme's catalytic cycle.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-6

By:

Schenk, Gerhard;
Elliott, Tristan W.;
Leung, Eleanor;
Carrington, Lyle E.;
Mitić, Nataša;
Gahan, Lawrence R.;
Guddat, Luke W.

Publication type:

Article

Fast dynamics perturbation analysis for prediction of protein functional sites.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1

By:

Dengming Ming;
Cohn, Judith D.;
Wall, Michael E.

Publication type:

Article

Identification of new, well-populated amino-acid sidechain rotamers involving hydroxyl-hydrogen atoms and sulfhydryl-hydrogen atoms.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-41

By:

Ho, Bosco K.;
Agard, David A.

Publication type:

Article

Multiple molecular dynamics simulation of the isoforms of human translation elongation factor 1A reveals reversible fluctuations between "open" and "closed" conformations and suggests specific for eEF1A1 affinity for Ca<sup>2+</sup>-calmodulin.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-4

By:

Kanibolotsky, Dmitry S.;
Novosyl'na, Oleksandra V.;
Abbott, Catherine M.;
Negrutskii, Boris S.;
El'skaya, Anna V.

Publication type:

Article

pi-Turns: types, systematics and the context of their occurrence in protein structures.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-39

By:

Dasgupta, Bhaskar;
Chakrabarti, Pinak

Publication type:

Article

Docking of molecules identified in bioactive medicinal plants extracts into the p50 NF-kappaB transcription factor: correlation with inhibition of NF-kappaB/DNA interactions and inhibitory effects on IL-8 gene expression.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-38

By:

Piccagli, Laura;
Fabbri, Enrica;
Borgatti, Monica;
Bezzerri, Valentino;
Mancini, Irene;
Nicolis, Elena;
Dechecchi, Maria C.;
Lampronti, Ilaria;
Cabrini, Giulio;
Gambari, Roberto

Publication type:

Article

Protein-segment universe exhibiting transitions at intermediate segment length in conformational subspaces.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-37

By:

Ikeda, Kazuyoshi;
Hirokawa, Takatsugu;
Higo, Junichi;
Tomii, Kentaro

Publication type:

Article

Contact prediction in protein modeling: Scoring, folding and refinement of coarse-grained models.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-36

By:

Latek, Dorota;
Kolinski, Andrzej

Publication type:

Article

Statistical analysis of the Bacterial Carbohydrate Structure Data Base (BCSDB): Characteristics and diversity of bacterial carbohydrates in comparison with mammalian glycans.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-35

By:

Herget, Stephan;
Toukach, Philip V.;
Ranzinger, René;
Hull, William E.;
Knirel, Yuriy A.;
Von der Lieth, Claus-Wilhelm

Publication type:

Article

Alternating evolutionary pressure in a genetic algorithm facilitates protein model selection.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-34

By:

Offman, Marc N.;
Tournier, Alexander L.;
Bates, Paul A.

Publication type:

Article

Structural characterization of CA1462, the Candida albicans thiamine pyrophosphokinase.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-33

By:

Santini, Sébastien;
Monchois, Vincent;
Mouz, Nicolas;
Sigoillot, Cécile;
Rousselle, Tristan;
Claverie, Jean-Michel;
Abergel, Chantal

Publication type:

Article

Structural analysis of urate oxidase in complex with its natural substrate inhibited by cyanide: Mechanistic implications.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-32

By:

Gabison, Laure;
Prangé, Thierry;
Colloc'h, Nathalie;
El Hajji, Mohamed;
Castro, Bertrand;
Chiadmi, Mohamed

Publication type:

Article

Systematic analysis of the effect of multiple templates on the accuracy of comparative models of protein structure.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-31

By:

Chakravarty, Suvobrata;
Godbole, Sucheta;
Bing Zhang;
Berger, Seth;
Sanchez, Roberto

Publication type:

Article

Graphical analysis of NMR structural quality and interactive contact map of NOE assignments in ARIA.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-30

By:

Bardiaux, Benjamin;
Bernard, Aymeric;
Rieping, Wolfgang;
Habeck, Michael;
Malliavin, Thérèse E.;
Nilges, Michael

Publication type:

Article

The crystal structure of the putative peptide-binding fragment from the human Hsp40 protein Hdj1.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-3

By:

Junbin Hu;
Yunkun Wu;
Jingzhi Li;
Xinguo Qian;
Zhengqing Fu;
Bingdong Sha

Publication type:

Article

Protecting role of cosolvents in protein denaturation by SDS: a structural study.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-29

By:

Michaux, Catherine;
Pouyez, Jenny;
Wouters, Johan;
Privé, Gilbert G.

Publication type:

Article

CUSP: an algorithm to distinguish structurally conserved and unconserved regions in protein domain alignments and its application in the study of large length variations.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-28

By:

Sandhya, Sankaran;
Pankaj, Barah;
Govind, Madabosse Kande;
Offmann, Bernard;
Srinivasan, Narayanaswamy;
Sowdhamini, Ramanathan

Publication type:

Article

Prediction of structural stability of short beta-hairpin peptides by molecular dynamics and knowledge-based potentials.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-27

By:

Noy, Karin;
Kalisman, Nir;
Keasar, Chen

Publication type:

Article

Interactions between the quality control ubiquitin ligase CHIP and ubiquitin conjugating enzymes.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-26

By:

Zhen Xu;
Kohli, Ekta;
Devlin, Karl I.;
Bold, Michael;
Nix, Jay C.;
Misra, Saurav

Publication type:

Article

K2D2: Estimation of protein secondary structure from circular dichroism spectra.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-25

By:

Perez-Iratxeta, Carolina;
Andrade-Navarro, Miguel A.

Publication type:

Article

Improving the accuracy of template-based predictions by mixing and matching between initial models.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-24

By:

Tianyun Liu;
Guerquin, Michal;
Samudrala, Ram

Publication type:

Article

Exploring allosteric coupling in the α-subunit of Heterotrimeric G proteins using evolutionary and ensemble-based approaches.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-23

By:

Sayar, Kemal;
Uğur, Özlem;
Tong Liu;
Hilser, Vincent J.;
Onaran, Ongun

Publication type:

Article

Structural insights on the pamoic acid and the 8 kDa domain of DNA polymerase beta complex: Towards the design of higher-affinity inhibitors.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-22

By:

Hazan, Corinne;
Boudsocq, François;
Gervais, Virginie;
Saurel, Olivier;
Ciais, Marion;
Cazaux, Christophe;
Czaplicki, Jerzy;
Milon, Alain

Publication type:

Article

PSAIA -- Protein Structure and Interaction Analyzer.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-21

By:

Mihel, Josip;
Šikić, Mile;
Tomić, Sanja;
Jeren, Branko;
Vlahoviček, Kristian

Publication type:

Article

The backbone structure of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein is essentially identical to its mesophilic E. coli homolog.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-20

By:

Cuneo, Matthew J.;
Yaji Tian;
Allert, Malin;
Hellinga, Homme W.

Publication type:

Article

Preservation of protein clefts in comparative models.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-2

By:

Piedra, David;
Lois, Sergi;
De la Cruz, Xavier

Publication type:

Article

Charge environments around phosphorylation sites in proteins.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-19

By:

Kitchen, James;
Saunders, Rebecca E.;
Warwicker, Jim

Publication type:

Article

A multi-template combination algorithm for protein comparative modeling.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-18

By:

Jianlin Cheng

Publication type:

Article

Solution structure of the Legionella pneumophila Mip-rapamycin complex.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-17

By:

Ceymann, Andreas;
Horstmann, Martin;
Ehses, Philipp;
Schweimer, Kristian;
Paschke, Anne-Katrin;
Steinert, Michael;
Faber, Cornelius

Publication type:

Article

Donor substrate recognition in the raffinose-bound E342A mutant of fructosyltransferase Bacillus subtilis levansucrase.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-16

By:

Guoyu Meng;
Fütterer, Klaus

Publication type:

Article

GANDivAWeb: A web server for detecting early folding units ("foldons") from protein 3D structures.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-15

By:

Laborde, Thomas;
Tomita, Masaru;
Krishnan, Arun

Publication type:

Article

"Hot cores" in proteins: Comparative analysis of the apolar contact area in structures from hyper/thermophilic and mesophilic organisms.

Published in:

BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-14

By:

Paiardini, Alessandro;
Sali, Riccardo;
Bossa, Francesco;
Pascarella, Stefano

Publication type:

Article