Works matching IS 14712164 AND DT 2022

Results: 882

Integrative analysis of transcriptome and metabolism reveals potential roles of carbon fixation and photorespiratory metabolism in response to drought in Shanlan upland rice.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09094-3

By:

Zhou, Shubo;
He, Lijing;
Lin, Wei;
Su, Yi;
Liu, Qing;
Qu, Mingnan;
Xiao, Langtao

Publication type:

Article

Comparative epigenomics by machine learning approach for neuroblastoma.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09061-y

By:

Sugino, Ryuichi P.;
Ohira, Miki;
Mansai, Sayaka P.;
Kamijo, Takehiko

Publication type:

Article

The antennal transcriptome of Triatoma infestans reveals substantial expression changes triggered by a blood meal.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09059-6

By:

Latorre Estivalis, Jose Manuel;
Traverso, Lucila;
Pontes, Gina;
Lorenzo, Marcelo Gustavo

Publication type:

Article

New insights into genome annotation in Podospora anserina through re-exploiting multiple RNA-seq data.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09085-4

By:

Lelandais, Gaëlle;
Remy, Damien;
Malagnac, Fabienne;
Grognet, Pierre

Publication type:

Article

Molecular machineries of ciliogenesis, cell survival, and vasculogenesis are differentially expressed during regeneration in explants of the demosponge Halichondria panicea.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09035-0

By:

Riesgo, Ana;
Santodomingo, Nadia;
Koutsouveli, Vasiliki;
Kumala, Lars;
Leger, Michelle M.;
Leys, Sally P.;
Funch, Peter

Publication type:

Article

Benchmarking full-length transcript single cell mRNA sequencing protocols.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09014-5

By:

Probst, Victoria;
Simonyan, Arman;
Pacheco, Felix;
Guo, Yuliu;
Nielsen, Finn Cilius;
Bagger, Frederik Otzen

Publication type:

Article

Identification of highly variable sequence fragments in unmapped reads for rapid bacterial genotyping.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08550-4

By:

Nykrynova, Marketa;
Barton, Vojtech;
Bezdicek, Matej;
Lengerova, Martina;
Skutkova, Helena

Publication type:

Article

Single-cell RNA sequencing revealed the liver heterogeneity between egg-laying duck and ceased-laying duck.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09089-0

By:

Du, Xue;
Lai, Shujing;
Zhao, Wanqiu;
Xu, Xiaoqin;
Xu, Wenwu;
Zeng, Tao;
Tian, Yong;
Lu, Lizhi

Publication type:

Article

Comparative epigenomics by machine learning approach for neuroblastoma.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09061-y

By:

Sugino, Ryuichi P.;
Ohira, Miki;
Mansai, Sayaka P.;
Kamijo, Takehiko

Publication type:

Article

Machine learning framework for gut microbiome biomarkers discovery and modulation analysis in large-scale obese population.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09087-2

By:

Liu, Yaoliang;
Zhu, Jinlin;
Wang, Hongchao;
Lu, Wenwei;
LEE, Yuan Kun;
Zhao, Jianxin;
Zhang, Hao

Publication type:

Article

Non-negative low-rank representation based on dictionary learning for single-cell RNA-sequencing data analysis.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09027-0

By:

Wang, Juan;
Zhang, Nana;
Yuan, Shasha;
Shang, Junliang;
Dai, Lingyun;
Li, Feng;
Liu, Jinxing

Publication type:

Article

NSD1 gene evolves under episodic selection within primates and mutations of specific exons in humans cause Sotos syndrome.

Published in:

2022

By:

Romero, Vanessa I.;
Arias-Almeida, Benjamin;
Aguiar, Stefanie A.

Publication type:

Literature Review

Gut microbiota profiling variated during colorectal cancer development in mouse.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09008-3

By:

Liu, Jingjing;
Dong, Wei;
Zhao, Jian;
Wu, Jing;
Xia, Jinqiang;
Xie, Shaofei;
Song, Xiaofeng

Publication type:

Article

Differential miRNA expression profiles in the bone marrow of Beagle dogs at different stages of Toxocara canis infection.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09081-8

By:

Gao, Jin;
Zou, Yang;
Wu, Xiao-Jing;
Xu, Yue;
Zhu, Xing-Quan;
Zheng, Wen-Bin

Publication type:

Article

Transcriptome analysis and identification of chemosensory genes in the larvae of Plagiodera versicolora.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09079-2

By:

Wu, Zhe-Ran;
Fan, Jian-Ting;
Tong, Na;
Guo, Jin-Meng;
Li, Yang;
Lu, Min;
Liu, Xiao-Long

Publication type:

Article

Transcriptomic analysis reveals the formation mechanism of anemone-type flower in chrysanthemum.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09078-3

By:

Fan, Jiawei;
Huang, Jialu;
Pu, Ya;
Niu, Yajing;
Zhang, Mengmeng;
Dai, Silan;
Huang, He

Publication type:

Article

Differential miRNA expression profiles in the bone marrow of Beagle dogs at different stages of Toxocara canis infection.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09081-8

By:

Gao, Jin;
Zou, Yang;
Wu, Xiao-Jing;
Xu, Yue;
Zhu, Xing-Quan;
Zheng, Wen-Bin

Publication type:

Article

Transcriptome analysis and identification of chemosensory genes in the larvae of Plagiodera versicolora.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09079-2

By:

Wu, Zhe-Ran;
Fan, Jian-Ting;
Tong, Na;
Guo, Jin-Meng;
Li, Yang;
Lu, Min;
Liu, Xiao-Long

Publication type:

Article

Transcriptomic analysis reveals the formation mechanism of anemone-type flower in chrysanthemum.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09078-3

By:

Fan, Jiawei;
Huang, Jialu;
Pu, Ya;
Niu, Yajing;
Zhang, Mengmeng;
Dai, Silan;
Huang, He

Publication type:

Article

Comparative genomics of drug-resistant strains of Mycobacterium tuberculosis in Ecuador.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09042-1

By:

Morey-León, Gabriel;
Andrade-Molina, Derly;
Fernández-Cadena, Juan Carlos;
Berná, Luisa

Publication type:

Article

Inferring regulatory element landscapes and gene regulatory networks from integrated analysis in eight hulless barley varieties under abiotic stress.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09070-x

By:

Xu, Qijun;
Huang, Shunmou;
Guo, Ganggang;
Yang, Chunbao;
Wang, Mu;
Zeng, Xingquan;
Wang, Yulin

Publication type:

Article

A role for worm cutl-24 in background- and parent-of-origin-dependent ER stress resistance.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09063-w

By:

Wang, Wenke;
Flury, Anna G.;
Rodriguez, Andrew T.;
Garrison, Jennifer L.;
Brem, Rachel B.

Publication type:

Article

Genome-wide characterization of the Triplophysa dalaica slc4 gene family and expression profiles in response to salinity changes.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09057-8

By:

Zhou, Chuanjiang;
Hu, Bo;
Tang, Yongtao;
Chen, Xin;
Ma, Zhigang;
Ding, Qiqi;
Nie, Guoxing

Publication type:

Article

XCVATR: detection and characterization of variant impact on the Embeddings of single -cell and bulk RNA-sequencing samples.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09004-7

By:

Harmanci, Arif;
Harmanci, Akdes Serin;
Klisch, Tiemo J.;
Patel, Akash J.

Publication type:

Article

In the battle of the disease: a transcriptomic analysis of European foulbrood-diseased larvae of the Western honey bee (Apis mellifera).

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09075-6

By:

Lewkowski, Oleg;
Poehlein, Anja;
Daniel, Rolf;
Erler, Silvio

Publication type:

Article

Comparative genomic analysis of Citrobacter sp. XT1-2-2 reveals insights into the molecular mechanism of microbial immobilization of heavy metals.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09069-4

By:

Shan, Shiping;
Cheng, Wei;
Li, Yilu;
Zhang, Min;
Liu, Zhudong;
Wang, Yushuang;
Wei, Xiaowu;
Fu, Zujiao;
Wu, Shandong;
Du, Dongxia;
Guo, Zhaohui

Publication type:

Article

Genome-wide association study identifies novel loci associated with skin autofluorescence in individuals without diabetes.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09062-x

By:

Vollenbrock, Charlotte E.;
Roshandel, Delnaz;
van der Klauw, Melanie M.;
Wolffenbuttel, Bruce H. R.;
Paterson, Andrew D.

Publication type:

Article

Deregulated RNAs involved in sympathetic regulation of sepsis-induced acute lung injury based on whole transcriptome sequencing.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09073-8

By:

Zhang, Jia;
Zhang, Zhao;
Nie, Xinran;
Liu, Yingli;
Qi, Yong;
Wang, Jing

Publication type:

Article

The proteomic analysis of bovine embryos developed in vivo or in vitro reveals the contribution of the maternal environment to early embryo.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09076-5

By:

Banliat, Charles;
Mahé, Coline;
Lavigne, Régis;
Com, Emmanuelle;
Pineau, Charles;
Labas, Valérie;
Guyonnet, Benoit;
Mermillod, Pascal;
Saint-Dizier, Marie

Publication type:

Article

Genomic diversity and comprehensive taxonomical classification of 61 Bacillus subtilis group member infecting bacteriophages, and the identification of ortholog taxonomic signature genes.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09055-w

By:

Abraha, Haftom Baraki;
Lee, Jae-Won;
Kim, Gayeong;
Ferdiansyah, Mokhammad Khoiron;
Ramesha, Rathnayaka Mudiyanselage;
Kim, Kwang-Pyo

Publication type:

Article

Genome-wide identification of SNPs associated with body weight in yak.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09077-4

By:

Jiang, Hui;
Chai, Zhi-Xin;
Cao, Han-Wen;
Zhang, Cheng-Fu;
Zhu, Yong;
Zhang, Qiang;
Xin, Jin-Wei

Publication type:

Article

Chromosome-level genome sequence of the Genetically Improved Farmed Tilapia (GIFT, Oreochromis niloticus) highlights regions of introgression with O. mossambicus.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09065-8

By:

Etherington, G. J.;
Nash, W.;
Ciezarek, A.;
Mehta, T. K.;
Barria, A.;
Peñaloza, C.;
Khan, M. G. Q.;
Durrant, A.;
Forrester, N.;
Fraser, F.;
Irish, N.;
Kaithakottil, G. G.;
Lipscombe, J.;
Trong, T.;
Watkins, C.;
Swarbreck, D.;
Angiolini, E.;
Cnaani, A.;
Gharbi, K.;
Houston, R. D.

Publication type:

Article

Genome-wide association mapping and genomic prediction of agronomical traits and breeding values in Iranian wheat under rain-fed and well-watered conditions.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08968-w

By:

Rabieyan, Ehsan;
Bihamta, Mohammad Reza;
Moghaddam, Mohsen Esmaeilzadeh;
Mohammadi, Valiollah;
Alipour, Hadi

Publication type:

Article

Comparison of structural variants detected by PacBio-CLR and ONT sequencing in pear.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09074-7

By:

Liu, Yueyuan;
Zhang, Mingyue;
Wang, Runze;
Li, Benping;
Jiang, Yafei;
Sun, Manyi;
Chang, Yaojun;
Wu, Jun

Publication type:

Article

The alteration of N6-methyladenosine (m6A) modification at the transcriptome-wide level in response of heat stress in bovine mammary epithelial cells.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09067-6

By:

Qi, Ying;
Zhang, Yiming;
Zhang, Jing;
Wang, Jing;
Li, Qiuling

Publication type:

Article

Transcriptome analysis of gene expression profiling from the deep sea in situ to the laboratory for the cold seep mussel Gigantidas haimaensis.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09064-9

By:

Zhang, Hua;
Yao, Gaoyou;
He, Maoxian

Publication type:

Article

eSMC: a statistical model to infer admixture events from individual genomics data.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09033-2

By:

Wang, Yonghui;
Zhao, Zicheng;
Miao, Xinyao;
Wang, Yinan;
Qian, Xiaobo;
Chen, Lingxi;
Wang, Changfa;
Li, Shuaicheng

Publication type:

Article

Genome-wide characterization of the Triplophysa dalaica slc4 gene family and expression profiles in response to salinity changes.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09057-8

By:

Zhou, Chuanjiang;
Hu, Bo;
Tang, Yongtao;
Chen, Xin;
Ma, Zhigang;
Ding, Qiqi;
Nie, Guoxing

Publication type:

Article

Transcriptomic analysis reveals the dynamic changes of transcription factors during early development of chicken embryo.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09054-x

By:

Liao, Liqin;
Yao, Ziqi;
Kong, Jie;
Zhang, Xinheng;
Li, Hongxin;
Chen, Weiguo;
Xie, Qingmei

Publication type:

Article

Identification and characterization of non-coding RNA networks in infected macrophages revealing the pathogenesis of F. nucleatum-associated diseases.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09052-z

By:

Zhou, Jieyu;
Liu, Lin;
Wu, Peiyao;
Zhao, Lei;
Wu, Yafei

Publication type:

Article

Maternal dietary methionine restriction alters hepatic expression of one-carbon metabolism and epigenetic mechanism genes in the ducklings.

Published in:

BMC Genomics, 2022, v. 23, p. 1, doi. 10.1186/s12864-022-09066-7

By:

Sécula, Aurélie;
Bluy, Lisa E.;
Chapuis, Hervé;
Bonnet, Agnès;
Collin, Anne;
Gress, Laure;
Cornuez, Alexis;
Martin, Xavier;
Bodin, Loys;
Bonnefont, Cécile M. D.;
Morisson, Mireille

Publication type:

Article

Genetic analysis of the ATP11B gene in Chinese Han population with cerebral small vessel disease.

Published in:

BMC Genomics, 2022, v. 23, p. 1, doi. 10.1186/s12864-022-09051-0

By:

Yu, Wen-Kai;
Wang, Yun-Chao;
Gao, Yuan;
Shi, Chang-He;
Fan, Yu;
Yu, Lu-Lu;
Zhao, Zi-Chen;
Li, Shan-Shan;
Xu, Yu-Ming;
Li, Yu-Sheng

Publication type:

Article

Alternative splicing induces sample-level variation in gene–gene correlations.

Published in:

BMC Genomics, 2022, v. 23, n. 4, p. 1, doi. 10.1186/s12864-024-11118-z

By:

Lu, Yihao;
Pierce, Brandon L.;
Wang, Pei;
Yang, Fan;
Chen, Lin S.

Publication type:

Article

Assisted clustering of gene expression data using regulatory data from partially overlapping sets of individuals.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09026-1

By:

Jiang, Wenqing;
Joehanes, Roby;
Levy, Daniel;
O'Connor, George T;
Dupuis, Josée

Publication type:

Article

amica: an interactive and user-friendly web-platform for the analysis of proteomics data.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09058-7

By:

Didusch, Sebastian;
Madern, Moritz;
Hartl, Markus;
Baccarini, Manuela

Publication type:

Article

Pangenome and genomic taxonomy analyses of Leuconostoc gelidum and Leuconostoc gasicomitatum.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09032-3

By:

Johansson, Per;
Säde, Elina;
Hultman, Jenni;
Auvinen, Petri;
Björkroth, Johanna

Publication type:

Article

Impacts of multiple anthropogenic stressors on the transcriptional response of Gammarus fossarum in a mesocosm field experiment.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09050-1

By:

Brasseur, Marie V.;
Beermann, Arne J.;
Elbrecht, Vasco;
Grabner, Daniel;
Peinert-Voss, Bianca;
Salis, Romana;
Weiss, Martina;
Mayer, Christoph;
Leese, Florian

Publication type:

Article

A comparative transcriptomic analysis reveals a coordinated mechanism activated in response to cold acclimation in common vetch (Viciasativa L.).

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09039-w

By:

Dong, Rui;
Luo, Ben;
Tang, Li;
Wang, Qiu-xia;
Lu, Zhong-Jie;
Chen, Chao;
Yang, Feng;
Wang, Song;
He, Jin

Publication type:

Article

Construction of transcriptome atlas of white yak hair follicle during anagen and catagen using single-cell RNA sequencing.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09003-8

By:

Zheng, Qingbo;
Ye, Na;
Bao, Pengjia;
Zhang, Xiaolan;
Wang, Fubin;
Ma, Lanhua;
Chu, Min;
Guo, Xian;
Liang, Chunnian;
Pan, Heping;
Yan, Ping

Publication type:

Article

Genetic variation in histone modifications and gene expression identifies regulatory variants in the mammary gland of cattle.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-09002-9

By:

Prowse-Wilkins, Claire P.;
Lopdell, Thomas J.;
Xiang, Ruidong;
Vander Jagt, Christy J.;
Littlejohn, Mathew D.;
Chamberlain, Amanda J.;
Goddard, Michael E.

Publication type:

Article