Works matching IS 14712164 AND DT 2022

Results: 882

Identification and integrated analysis of lncRNAs and miRNAs in IPEC-J2 cells provide novel insight into the regulation of the innate immune response by PDCoV infection.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08722-2

By:

Jiang, Shan;
Chen, Jianfei;
Li, Xiuli;
Ren, Weike;
Li, Fengxiang;
Wang, Ting;
Li, Cheng;
Dong, Zhimin;
Tian, Xiangxue;
Zhang, Li;
Wang, Lili;
lu, Chao;
Chi, Jingjing;
Feng, Li;
Yan, Minghua

Publication type:

Article

The effects of sequencing depth on the assembly of coding and noncoding transcripts in the human genome.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08717-z

By:

Babarinde, Isaac Adeyemi;
Hutchins, Andrew Paul

Publication type:

Article

Equus roundworms (Parascaris univalens) are undergoing rapid divergence while genes involved in metabolic as well as anthelminic resistance are under positive selection.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08702-6

By:

Han, Lei;
Lan, Tianming;
Lu, Yaxian;
Zhou, Mengchao;
Li, Haimeng;
Lu, Haorong;
Wang, Qing;
Li, Xiuyun;
Du, Shan;
Guan, Chunyu;
Zhang, Yong;
Sahu, Sunil Kumar;
Qian, Puyi;
Zhang, Shaofang;
Zhou, Hongcheng;
Guo, Wei;
Chai, Hongliang;
Wang, Sibo;
Liu, Quan;
Liu, Huan

Publication type:

Article

Genomic analysis of Listeria monocytogenes from US food processing environments reveals a high prevalence of QAC efflux genes but limited evidence of their contribution to environmental persistence.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08695-2

By:

Daeschel, Devin;
Pettengill, James B.;
Wang, Yu;
Chen, Yi;
Allard, Marc;
Snyder, Abigail B.

Publication type:

Article

Transcriptome changes associated with apple (Malus domestica) root defense response after Fusarium proliferatum f. sp. malus domestica infection.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08721-3

By:

Duan, Yanan;
Ma, Shurui;
Chen, Xuesen;
Shen, Xiang;
Yin, Chengmiao;
Mao, Zhiquan

Publication type:

Article

The role of ZNF143 overexpression in rat liver cell proliferation.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08714-2

By:

Ye, Bingyu;
Shen, Wenlong;
Zhang, Chunyan;
Yu, Mengli;
Ding, Xinru;
Yin, Man;
Wang, Yahao;
Guo, Xinjie;
Bai, Ge;
Lin, Kailin;
Shi, Shu;
Li, Ping;
Zhang, Yan;
Yu, Guoying;
Zhao, Zhihu

Publication type:

Article

Marine gregarine genomes reveal the breadth of apicomplexan diversity with a partially conserved glideosome machinery.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08700-8

By:

Boisard, Julie;
Duvernois-Berthet, Evelyne;
Duval, Linda;
Schrével, Joseph;
Guillou, Laure;
Labat, Amandine;
Le Panse, Sophie;
Prensier, Gérard;
Ponger, Loïc;
Florent, Isabelle

Publication type:

Article

Transcriptome analysis of the response to low temperature acclimation in Calliptamus italicus eggs.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08705-3

By:

Liu, Qian;
Luo, Di;
Wang, Mengjia;
Song, Xingmin;
Ye, Xiaofang;
Jashenko, Roman;
Ji, Rong

Publication type:

Article

In silico characterization, molecular phylogeny, and expression profiling of genes encoding legume lectin-like proteins under various abiotic stresses in Arabidopsis thaliana.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08708-0

By:

Biswas, Subhankar;
Mondal, Raju;
Srivastava, Akanksha;
Trivedi, Maitri;
Singh, Sunil Kumar;
Mishra, Yogesh

Publication type:

Article

The complete mitochondrial genome of okra (Abelmoschus esculentus): using nanopore long reads to investigate gene transfer from chloroplast genomes and rearrangements of mitochondrial DNA molecules.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08706-2

By:

Li, Jihan;
Li, Jingling;
Ma, Yubo;
Kou, Lu;
Wei, Juanjuan;
Wang, Weixing

Publication type:

Article

Transcriptome analysis of SerpinB2-deficient breast tumors provides insight into deciphering SerpinB2-mediated roles in breast cancer progression.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08704-4

By:

Piao, Yin Ji;
Kim, Hoe Suk;
Han, Wonshik;
Moon, Woo Kyung

Publication type:

Article

Genome-scale metabolic network model of Eriocheir sinensis icrab4665 and nutritional requirement analysis.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08698-z

By:

Li, Jingjing;
Gou, Yifei;
Yang, Jiarui;
Zhao, Lingxuan;
Wang, Bin;
Hao, Tong;
Sun, Jinsheng

Publication type:

Article

Along the Bos taurus genome, uncover candidate imprinting control regions.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08694-3

By:

Wyss, Phillip;
Song, Carol;
Bina, Minou

Publication type:

Article

Manipulating base quality scores enables variant calling from bisulfite sequencing alignments using conventional bayesian approaches.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08691-6

By:

Nunn, Adam;
Otto, Christian;
Fasold, Mario;
Stadler, Peter F;
Langenberger, David

Publication type:

Article

eQTLs are key players in the integration of genomic and transcriptomic data for phenotype prediction.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08690-7

By:

Wade, Abdou Rahmane;
Duruflé, Harold;
Sanchez, Leopoldo;
Segura, Vincent

Publication type:

Article

Advances in understanding Norway spruce natural resistance to needle bladder rust infection: transcriptional and secondary metabolites profiling.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08661-y

By:

Trujillo-Moya, Carlos;
Ganthaler, Andrea;
Stöggl, Wolfgang;
Arc, Erwann;
Kranner, Ilse;
Schueler, Silvio;
Ertl, Reinhard;
Espinosa-Ruiz, Ana;
Martínez-Godoy, Maria Ángeles;
George, Jan-Peter;
Mayr, Stefan

Publication type:

Article

VisProDom: an interactive Shiny/R application for displaying protein domains with transcriptional features.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08713-3

By:

Wang, Hongwei;
Zhang, Xiaotian;
Ding, Shuangcheng;
Huang, Yujie;
Wang, Shengyong;
Chen, Huili;
Chen, Yuhang;
Li, Yuting

Publication type:

Article

SDNN-PPI: self-attention with deep neural network effect on protein-protein interaction prediction.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08687-2

By:

Li, Xue;
Han, Peifu;
Wang, Gan;
Chen, Wenqi;
Wang, Shuang;
Song, Tao

Publication type:

Article

Transcriptomic analysis of tuberous root in two sweet potato varieties reveals the important genes and regulatory pathways in tuberous root development.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08670-x

By:

Cai, Zhaoqin;
Cai, Zhipeng;
Huang, Jingli;
Wang, Aiqin;
Ntambiyukuri, Aaron;
Chen, Bimei;
Zheng, Ganghui;
Li, Huifeng;
Huang, Yongmei;
Zhan, Jie;
Xiao, Dong;
He, Longfei

Publication type:

Article

Comparative genomics analysis and virulence-related factors in novel Aliarcobacter faecis and Aliarcobacter lanthieri species identified as potential opportunistic pathogens.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08663-w

By:

Chuan, Jiacheng;
Belov, Anatoly;
Cloutier, Michel;
Li, Xiang;
Khan, Izhar U. H.;
Chen, Wen

Publication type:

Article

Genomic characterization of Streptococcus parasuis, a close relative of Streptococcus suis and also a potential opportunistic zoonotic pathogen.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08710-6

By:

Guo, Genglin;
Wang, Zhuohao;
Li, Quan;
Yu, Yanfei;
Li, Yubao;
Tan, Zhongming;
Zhang, Wei

Publication type:

Article

Accurate recombination estimation from pooled genotyping and sequencing: a case study on barley.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08701-7

By:

Schneider, Michael;
Casale, Federico;
Stich, Benjamin

Publication type:

Article

Cultivar-specific markers, mutations, and chimerisim of Cavendish banana somaclonal variants resistant to Fusarium oxysporum f. sp. cubense tropical race 4.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08692-5

By:

Hou, Bo-Han;
Tsai, Yi-Heng;
Chiang, Ming-Hau;
Tsao, Shu-Ming;
Huang, Shih-Hung;
Chao, Chih-Ping;
Chen, Ho-Ming

Publication type:

Article

Whole genome sequencing analysis to evaluate the influence of T2DM on polymorphisms associated with drug resistance in M. tuberculosis.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08709-z

By:

Bermudez-Hernández, Gustavo Adolfo;
Pérez-Martínez, Damián Eduardo;
Madrazo-Moya, Carlos Francisco;
Cancino-Muñoz, Irving;
Comas, Iñaki;
Zenteno-Cuevas, Roberto

Publication type:

Article

Adaptation insights from comparative transcriptome analysis of two Opisthopappus species in the Taihang mountains.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08703-5

By:

Chen, Ning;
Zhang, Hao;
Zang, En;
Liu, Zhi-Xia;
Lan, Ya-Fei;
Hao, Wei-Li;
He, Shan;
Fan, Xing;
Sun, Gen-Lou;
Wang, Yi-Ling

Publication type:

Article

Ectopic expression of a combination of 5 genes detects high risk forms of T-cell acute lymphoblastic leukemia.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08688-1

By:

Peng, Li-Jun;
Zhou, Yue-Bo;
Geng, Mei;
Bourova-Flin, Ekaterina;
Chuffart, Florent;
Zhang, Wei-Na;
Wang, Tao;
Gao, Meng-Qing;
Xi, Meng-Ping;
Cheng, Zhong-Yi;
Zhang, Jiao-Jiao;
Liu, Yuan-Fang;
Chen, Bing;
Khochbin, Saadi;
Wang, Jin;
Rousseaux, Sophie;
Mi, Jian-Qing

Publication type:

Article

Correction: Alternative splicing plays key roles in response to stress across different stages of fighting in the fish Betta splendens.

Published in:

2022

By:

Vu, Trieu-Duc;
Oshima, Kenshiro;
Matsumura, Kenya;
Iwasaki, Yuki;
Chiu, Ming-Tzu;
Nikaido, Masato;
Okada, Norihiro

Publication type:

Correction Notice

Transcriptome of the synganglion in the tick Ixodes ricinus and evolution of the cys-loop ligand-gated ion channel family in ticks.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08669-4

By:

Rispe, Claude;
Hervet, Caroline;
de la Cotte, Nathalie;
Daveu, Romain;
Labadie, Karine;
Noel, Benjamin;
Aury, Jean-Marc;
Thany, Steeve;
Taillebois, Emiliane;
Cartereau, Alison;
Le Mauff, Anaïs;
Charvet, Claude L.;
Auger, Clément;
Courtot, Elise;
Neveu, Cédric;
Plantard, Olivier

Publication type:

Article

Genomic analysis provides novel insights into diversification and taxonomy of Allorhizobium vitis (i.e. Agrobacterium vitis).

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08662-x

By:

Kuzmanović, Nemanja;
Biondi, Enrico;
Overmann, Jörg;
Puławska, Joanna;
Verbarg, Susanne;
Smalla, Kornelia;
Lassalle, Florent

Publication type:

Article

Antennal transcriptome analysis of olfactory genes and tissue expression profiling of odorant binding proteins in Semanotus bifasciatus (cerambycidae: coleoptera).

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08655-w

By:

Li, Han;
Hao, Enhua;
Li, Yini;
Yang, Huan;
Sun, Piao;
Lu, Pengfei;
Qiao, Haili

Publication type:

Article

Correction: Evolution and dispersal of mitochondrial DNA haplogroup U5 in Northern Europe: insights from an unsupervised learning approach to phylogeography.

Published in:

2022

By:

Kristjansson, Dana;
Bohlin, Jon;
Nguyen, Truc Trung;
Jugessur, Astanand;
Schurr, Theodore G.

Publication type:

Correction Notice

The GALNS p.P77R variant is a probable Gujarati-Indian founder mutation causing Mucopolysaccharidosis IVA syndrome.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08693-4

By:

Sheth, Harsh;
Naik, Premal;
Shah, Maulin;
Bhavsar, Riddhi;
Nair, Aadhira;
Sheth, Frenny;
Sheth, Jayesh

Publication type:

Article

Transcriptome study digs out BMP2 involved in adipogenesis in sheep tails.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08657-8

By:

Jin, Meilin;
Fei, Xiaojuan;
Li, Taotao;
Lu, Zengkui;
Chu, Mingxing;
Di, Ran;
He, Xiaoyun;
Wang, Xiangyu;
Wei, Caihong

Publication type:

Article

Assessing genomic diversity and signatures of selection in Pinan cattle using whole-genome sequencing data.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08645-y

By:

Zhang, Shunjin;
Yao, Zhi;
Li, Xinmiao;
Zhang, Zijing;
Liu, Xian;
Yang, Peng;
Chen, Ningbo;
Xia, Xiaoting;
Lyu, Shijie;
Shi, Qiaoting;
Wang, Eryao;
Ru, Baorui;
Jiang, Yu;
Lei, Chuzhao;
Chen, Hong;
Huang, Yongzhen

Publication type:

Article

Evolution and dispersal of mitochondrial DNA haplogroup U5 in Northern Europe: insights from an unsupervised learning approach to phylogeography.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08572-y

By:

Kristjansson, Dana;
Bohlin, Jon;
Nguyen, Truc Trung;
Jugessur, Astanand;
Schurr, Theodore G.

Publication type:

Article

HLA-E restricted cytomegalovirus UL40 peptide polymorphism may represent a risk factor following congenital infection.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08689-0

By:

Tarragó, David;
González, Irene;
González-Escribano, Maria Francisca

Publication type:

Article

Transcriptional changes in the peripheral blood leukocytes from Brangus cattle before and after tick challenge with Rhipicephalus australis.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08686-3

By:

Mantilla Valdivieso, Emily F.;
Ross, Elizabeth M.;
Raza, Ali;
Naseem, Muhammad Noman;
Kamran, Muhammad;
Hayes, Ben J.;
Jonsson, Nicholas N.;
James, Peter;
Tabor, Ala E.

Publication type:

Article

Genome-wide identification and expression analysis reveals spinach brassinosteroid-signaling kinase (BSK) gene family functions in temperature stress response.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08684-5

By:

Li, Yang;
Zhang, Heng;
Zhang, Yongxue;
Liu, Yanshuang;
Li, Yueyue;
Tian, Haodong;
Guo, Siyi;
Sun, Meihong;
Qin, Zhi;
Dai, Shaojun

Publication type:

Article

HLA-A, -B, -C, -DRB1 and -DQB1 allele and haplotype frequencies in Lebanese and their relatedness to neighboring and distant populations.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08682-7

By:

Almawi, Wassim Y.;
Nemr, Rita;
Finan, Ramzi R.;
Saldhana, F. Lisa;
Hajjej, Abdelhafidh

Publication type:

Article

Identification, characterization and functional analysis of gonadal long noncoding RNAs in a protogynous hermaphroditic teleost fish, the ricefield eel (Monopterus albus).

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08679-2

By:

He, Zhi;
Ye, Lijuan;
Yang, Deying;
Ma, Zhijun;
Deng, Faqiang;
He, Zhide;
Hu, Jiaxiang;
Chen, Hongjun;
Zheng, Li;
Pu, Yong;
Jiao, Yuanyuan;
Chen, Qiqi;
Gao, Kuo;
Xiong, Jinxin;
Lai, Bolin;
Gu, Xiaobin;
Huang, Xiaoli;
Yang, Shiyong;
Zhang, Mingwang;
Yan, Taiming

Publication type:

Article

From a large-scale genomic analysis of insertion sequences to insights into their regulatory roles in prokaryotes.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08678-3

By:

Tempel, Sebastien;
Bedo, Justin;
Talla, Emmanuel

Publication type:

Article

A transcriptome software comparison for the analyses of treatments expected to give subtle gene expression responses.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08673-8

By:

Thawng, Cung Nawl;
Smith, Geoffrey Battle

Publication type:

Article

Transcriptome study digs out BMP2 involved in adipogenesis in sheep tails.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08657-8

By:

Jin, Meilin;
Fei, Xiaojuan;
Li, Taotao;
Lu, Zengkui;
Chu, Mingxing;
Di, Ran;
He, Xiaoyun;
Wang, Xiangyu;
Wei, Caihong

Publication type:

Article

Sequence-based drug-target affinity prediction using weighted graph neural networks.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08648-9

By:

Jiang, Mingjian;
Wang, Shuang;
Zhang, Shugang;
Zhou, Wei;
Zhang, Yuanyuan;
Li, Zhen

Publication type:

Article

The extensive transgenerational transcriptomic effects of ocean acidification on the olfactory epithelium of a marine fish are associated with a better viral resistance.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08647-w

By:

Cohen-Rengifo, Mishal;
Danion, Morgane;
Gonzalez, Anne-Alicia;
Bégout, Marie-Laure;
Cormier, Alexandre;
Noël, Cyril;
Cabon, Joëlle;
Vitré, Thomas;
Mark, Felix C.;
Mazurais, David

Publication type:

Article

Genome-wide alternative splicing profile in the posterior kidney of brown trout (Salmo trutta) during proliferative kidney disease.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08685-4

By:

Sudhagar, Arun;
El-Matbouli, Mansour;
Kumar, Gokhlesh

Publication type:

Article

Identification of the CIPK-CBL family gene and functional characterization of CqCIPK14 gene under drought stress in quinoa.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08683-6

By:

Xiaolin, Zhu;
Baoqiang, Wang;
Xian, Wang;
Xiaohong, Wei

Publication type:

Article

Influence of Agaricus bisporus establishment and fungicidal treatments on casing soil metataxonomy during mushroom cultivation.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08638-x

By:

Tello Martín, Maria Luisa;
Lavega, Rebeca;
Carrasco, Jaime Carrasco;
Pérez, Margarita;
Pérez-Pulido, Antonio J.;
Thon, Michael;
Pérez Benito, Ernesto

Publication type:

Article

Genetic architecture of end-use quality traits in soft white winter wheat.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08676-5

By:

Aoun, Meriem;
Carter, Arron H.;
Morris, Craig F.;
Kiszonas, Alecia M.

Publication type:

Article

Genome-wide identification of R2R3-MYB gene family and association with anthocyanin biosynthesis in Brassica species.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08666-7

By:

Chen, Daozong;
Chen, Haidong;
Dai, Guoqiang;
Zhang, Haimei;
Liu, Yi;
Shen, Wenjie;
Zhu, Bo;
Cui, Cheng;
Tan, Chen

Publication type:

Article