Works matching IS 14712164 AND DT 2020 AND VI 21

Results: 906

Construction of a high-density genetic map and mapping of growth related QTLs in the grass carp (Ctenopharyngodon idellus).

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6730-x

By:

Huang, Xiaoli;
Jiang, Yanxin;
Zhang, Wanting;
Cheng, Yingyin;
Wang, Yaping;
Ma, Xiaocui;
Duan, You;
Xia, Lei;
Chen, Yaxin;
Wu, Nan;
Shi, Mijuan;
Xia, Xiao-Qin

Publication type:

Article

Protein changes as robust signatures of fish chronic stress: a proteomics approach to fish welfare research.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6728-4

By:

Raposo de Magalhães, Cláudia;
Schrama, Denise;
Farinha, Ana Paula;
Revets, Dominique;
Kuehn, Annette;
Planchon, Sébastien;
Rodrigues, Pedro Miguel;
Cerqueira, Marco

Publication type:

Article

Genome of extreme halophyte Puccinellia tenuiflora.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6727-5

By:

Guo, Rui;
Zhao, Long;
Zhang, Kaijian;
Gao, Dan;
Yang, Chunwu

Publication type:

Article

On the utility of RNA sample pooling to optimize cost and statistical power in RNA sequencing experiments.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6721-y

By:

Assefa, Alemu Takele;
Vandesompele, Jo;
Thas, Olivier

Publication type:

Article

DolphinNext: a distributed data processing platform for high throughput genomics.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6714-x

By:

Yukselen, Onur;
Turkyilmaz, Osman;
Ozturk, Ahmet Rasit;
Garber, Manuel;
Kucukural, Alper

Publication type:

Article

Campylobacter jejuni and Campylobacter coli autotransporter genes exhibit lineage-associated distribution and decay.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6704-z

By:

Mehat, Jai W.;
La Ragione, Roberto M.;
van Vliet, Arnoud H. M.

Publication type:

Article

Genome-wide analysis of the citrus B3 superfamily and their association with somatic embryogenesis.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6715-9

By:

Liu, Zheng;
Ge, Xiao-Xia;
Wu, Xiao-Meng;
Xu, Qiang;
Atkinson, Ross G.;
Guo, Wen-Wu

Publication type:

Article

Modern human changes in regulatory regions implicated in cortical development.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6706-x

By:

Moriano, Juan;
Boeckx, Cedric

Publication type:

Article

Whole-genome genotyping and resequencing reveal the association of a deletion in the complex interferon alpha gene cluster with hypothyroidism in dogs.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6700-3

By:

Bianchi, Matteo;
Rafati, Nima;
Karlsson, Åsa;
Murén, Eva;
Rubin, Carl-Johan;
Sundberg, Katarina;
Andersson, Göran;
Kämpe, Olle;
Hedhammar, Åke;
Lindblad-Toh, Kerstin;
Rosengren Pielberg, Gerli

Publication type:

Article

Transcriptomic analysis of sea cucumber (Holothuria leucospilota) coelomocytes revealed the echinoderm cytokine response during immune challenge.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6698-6

By:

Wu, Xiaofen;
Chen, Ting;
Huo, Da;
Yu, Zonghe;
Ruan, Yao;
Cheng, Chuhang;
Jiang, Xiao;
Ren, Chunhua

Publication type:

Article

Operon-based approach for the inference of rRNA and tRNA evolutionary histories in bacteria.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6612-2

By:

Pawliszak, Tomasz;
Chua, Meghan;
Leung, Carson K.;
Tremblay-Savard, Olivier

Publication type:

Article

Comparing copy-number profiles under multi-copy amplifications and deletions.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6611-3

By:

Cordonnier, Garance;
Lafond, Manuel

Publication type:

Article

Getting insight into the pan-genome structure with PangTree.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6610-4

By:

Dziadkiewicz, Paulina;
Dojer, Norbert

Publication type:

Article

Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6609-x

By:

Rubert, Diego P.;
Martinez, Fábio V.;
Stoye, Jens;
Doerr, Daniel

Publication type:

Article

Integrated likelihood for phylogenomics under a no-common-mechanism model.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6608-y

By:

Tidwell, Hunter;
Nakhleh, Luay

Publication type:

Article

Forcing external constraints on tree inference using ASTRAL.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6607-z

By:

Rabiee, Maryam;
Mirarab, Siavash

Publication type:

Article

Epigenetic pacemaker: closed form algebraic solutions.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6606-0

By:

Snir, Sagi

Publication type:

Article

Unblended disjoint tree merging using GTM improves species tree estimation.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6605-1

By:

Smirnov, Vladimir;
Warnow, Tandy

Publication type:

Article

Assessing breed integrity of Göttingen Minipigs.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6590-4

By:

Reimer, Christian;
Ha, Ngoc-Thuy;
Sharifi, Ahmad Reza;
Geibel, Johannes;
Mikkelsen, Lars Friis;
Schlather, Martin;
Weigend, Steffen;
Simianer, Henner

Publication type:

Article

Genomic characterization of an emerging Enterobacteriaceae species: the first case of co-infection with a typical pathogen in a human patient.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6720-z

By:

Zhang, Zhao;
Li, Daixi;
Shi, Xing;
Zhai, Yao;
Guo, Yatao;
Zheng, Yali;
Zhao, Lili;
He, Yukun;
Chen, Yusheng;
Wang, Zhanwei;
Su, Jianrong;
Kang, Yu;
Gao, Zhancheng

Publication type:

Article

Being red, blue and green: the genetic basis of coloration differences in the strawberry poison frog (Oophaga pumilio).

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6719-5

By:

Rodríguez, Ariel;
Mundy, Nicholas I.;
Ibáñez, Roberto;
Pröhl, Heike

Publication type:

Article

Identification and analysis of the FAD gene family in walnuts (Juglans regia L.) based on transcriptome data.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6692-z

By:

Liu, Kai;
Zhao, Shugang;
Wang, Shuang;
Wang, Hongxia;
Zhang, Zhihua

Publication type:

Article

Transcriptomic diversity in seedling roots of European flint maize in response to cold.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6682-1

By:

Frey, Felix P.;
Pitz, Marion;
Schön, Chris-Carolin;
Hochholdinger, Frank

Publication type:

Article

microRNA profiling in the Weddell seal suggests novel regulatory mechanisms contributing to diving adaptation.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6675-0

By:

Penso-Dolfin, Luca;
Haerty, Wilfried;
Hindle, Allyson;
Di Palma, Federica

Publication type:

Article

Identification and application of piwi-interacting RNAs from seminal plasma exosomes in Cynoglossus semilaevis.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6660-7

By:

Zhang, Bo;
Zhao, Na;
Jia, Lei;
Che, Jinyuan;
He, Xiaoxu;
Liu, Kefeng;
Bao, Baolong

Publication type:

Article

Automation of Spatial Transcriptomics library preparation to enable rapid and robust insights into spatial organization of tissues.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6631-z

By:

Berglund, Emelie;
Saarenpää, Sami;
Jemt, Anders;
Gruselius, Joel;
Larsson, Ludvig;
Bergenstråhle, Ludvig;
Lundeberg, Joakim;
Giacomello, Stefania

Publication type:

Article

Genome wide screening and comparative genome analysis for Meta-QTLs, ortho-MQTLs and candidate genes controlling yield and yield-related traits in rice.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6702-1

By:

Khahani, Bahman;
Tavakol, Elahe;
Shariati, Vahid;
Fornara, Fabio

Publication type:

Article

Comparative transcriptomic analysis of global gene expression mediated by (p) ppGpp reveals common regulatory networks in Pseudomonas syringae.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6701-2

By:

Liu, Jun;
Yu, Menghao;
Chatnaparat, Tiyakhon;
Lee, Jae Hoon;
Tian, Yanli;
Hu, Baishi;
Zhao, Youfu

Publication type:

Article

Copy number variation in human genomes from three major ethno-linguistic groups in Africa.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6669-y

By:

Nyangiri, Oscar A.;
Noyes, Harry;
Mulindwa, Julius;
Ilboudo, Hamidou;
Kabore, Justin Windingoudi;
Ahouty, Bernardin;
Koffi, Mathurin;
Asina, Olivier Fataki;
Mumba, Dieudonne;
Ofon, Elvis;
Simo, Gustave;
Kimuda, Magambo Phillip;
Enyaru, John;
Alibu, Vincent Pius;
Kamoto, Kelita;
Chisi, John;
Simuunza, Martin;
Camara, Mamadou;
Sidibe, Issa;
MacLeod, Annette

Publication type:

Article

Comparative transcriptome analysis of two contrasting wolfberry genotypes during fruit development and ripening and characterization of the LrMYB1 transcription factor that regulates flavonoid biosynthesis.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6663-4

By:

Wang, Cuiping;
Dong, Yan;
Zhu, Lizhen;
Wang, Libin;
Yan, Li;
Wang, Mengze;
Zhu, Qiang;
Nan, Xiongxiong;
Li, Yonghua;
Li, Jian

Publication type:

Article

Identification of key genes and pathways associated with feed efficiency of native chickens based on transcriptome data via bioinformatics analysis.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6713-y

By:

Yang, Lei;
He, Tingting;
Xiong, Fengliang;
Chen, Xianzhen;
Fan, Xinfeng;
Jin, Sihua;
Geng, Zhaoyu

Publication type:

Article

Lung transcriptomic clock predicts premature aging in cigarette smoke-exposed mice.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6712-z

By:

Choukrallah, Mohamed-Amin;
Hoeng, Julia;
Peitsch, Manuel C.;
Martin, Florian

Publication type:

Article

A benchmark study of ab initio gene prediction methods in diverse eukaryotic organisms.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6707-9

By:

Scalzitti, Nicolas;
Jeannin-Girardon, Anne;
Collet, Pierre;
Poch, Olivier;
Thompson, Julie D.

Publication type:

Article

Gene expression profiling identifies pathways involved in seed maturation of Jatropha curcas.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6666-1

By:

Maghuly, Fatemeh;
Deák, Tamás;
Vierlinger, Klemens;
Pabinger, Stephan;
Tafer, Hakim;
Laimer, Margit

Publication type:

Article

Using multiple reference genomes to identify and resolve annotation inconsistencies.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6696-8

By:

Monnahan, Patrick J.;
Michno, Jean-Michel;
O'Connor, Christine;
Brohammer, Alex B.;
Springer, Nathan M.;
McGaugh, Suzanne E.;
Hirsch, Candice N.

Publication type:

Article

Gut microbiota in children with juvenile idiopathic arthritis: characteristics, biomarker identification, and usefulness in clinical prediction.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6703-0

By:

Qian, Xubo;
Liu, Yong-Xin;
Ye, Xiaohong;
Zheng, Wenjie;
Lv, Shaoxia;
Mo, Miaojun;
Lin, Jinjing;
Wang, Wenqin;
Wang, Weihan;
Zhang, Xianning;
Lu, Meiping

Publication type:

Article

Genome-wide identification and expression analysis of the NAC transcription factor family in tomato (Solanum lycopersicum) during aluminum stress.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6689-7

By:

Jin, Jian Feng;
Wang, Zhan Qi;
He, Qi Yu;
Wang, Jia Yi;
Li, Peng Fei;
Xu, Ji Ming;
Zheng, Shao Jian;
Fan, Wei;
Yang, Jian Li

Publication type:

Article

Stable intronic sequence RNAs (sisRNAs) are selected regions in introns with distinct properties.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6687-9

By:

Jin, Jing;
He, Ximiao;
Silva, Elena

Publication type:

Article

Genome-wide analysis of Myo-inositol oxygenase gene family in tomato reveals their involvement in ascorbic acid accumulation.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6708-8

By:

Munir, Shoaib;
Mumtaz, Muhammad Ali;
Ahiakpa, John Kojo;
Liu, Genzhong;
Chen, Weifang;
Zhou, Guolin;
Zheng, Wei;
Ye, Zhibiao;
Zhang, Yuyang

Publication type:

Article

Assessing graph-based read mappers against a baseline approach highlights strengths and weaknesses of current methods.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6685-y

By:

Grytten, Ivar;
Rand, Knut D.;
Nederbragt, Alexander J.;
Sandve, Geir K.

Publication type:

Article

A qualitative transcriptional signature to reclassify histological grade of ER-positive breast cancer patients.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6659-0

By:

Li, Jing;
Jiang, Wenbin;
Liang, Qirui;
Liu, Guanghao;
Dai, Yupeng;
Zheng, Hailong;
Yang, Jing;
Cai, Hao;
Zheng, Guo

Publication type:

Article

Complete genome sequence and annotation of the laboratory reference strain Shigella flexneri serotype 5a M90T and genome-wide transcriptional start site determination.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6565-5

By:

Cervantes-Rivera, Ramón;
Tronnet, Sophie;
Puhar, Andrea

Publication type:

Article

Label free proteomics and systematic analysis of secretome reveals effector candidates regulated by SGE1 and FTF1 in the plant pathogen Fusarium oxysporum f. sp. cubense tropical race 4.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6695-9

By:

Zhao, Shixue;
An, Bang;
Guo, Yanhua;
Hou, Xingrong;
Luo, Hongli;
He, Chaozu;
Wang, Qiannan

Publication type:

Article

Genome-wide analysis of wheat DNA-binding with one finger (Dof) transcription factor genes: evolutionary characteristics and diverse abiotic stress responses.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6691-0

By:

Liu, Yue;
Liu, Nannan;
Deng, Xiong;
Liu, Dongmiao;
Li, Mengfei;
Cui, Dada;
Hu, Yingkao;
Yan, Yueming

Publication type:

Article

Re-annotation of the Theileria parva genome refines 53% of the proteome and uncovers essential components of N-glycosylation, a conserved pathway in many organisms.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6683-0

By:

Tretina, Kyle;
Pelle, Roger;
Orvis, Joshua;
Gotia, Hanzel T.;
Ifeonu, Olukemi O.;
Kumari, Priti;
Palmateer, Nicholas C.;
Iqbal, Shaikh B. A.;
Fry, Lindsay M.;
Nene, Vishvanath M.;
Daubenberger, Claudia A.;
Bishop, Richard P.;
Silva, Joana C.

Publication type:

Article

Entropy based analysis of vertebrate sperm protamines sequences: evidence of potential dityrosine and cysteine-tyrosine cross-linking in sperm protamines.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6681-2

By:

Powell, Christian D.;
Kirchoff, Daniel C.;
DeRouchey, Jason E.;
Moseley, Hunter N. B.

Publication type:

Article

Fine mapping of a Phytophthora-resistance locus RpsGZ in soybean using genotyping-by-sequencing.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6668-z

By:

Jiang, Bingzhi;
Cheng, Yanbo;
Cai, Zhandong;
Li, Mu;
Jiang, Ze;
Ma, Ruirui;
Yuan, Yeshan;
Xia, Qiuju;
Nian, Hai

Publication type:

Article

ddRADseq-assisted construction of a high-density SNP genetic map and QTL fine mapping for growth-related traits in the spotted scat (Scatophagus argus).

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6658-1

By:

Yang, Wei;
Wang, Yaorong;
Jiang, Dongneng;
Tian, Changxu;
Zhu, Chunhua;
Li, Guangli;
Chen, Huapu

Publication type:

Article

An improved de novo genome assembly of the common marmoset genome yields improved contiguity and increased mapping rates of sequence data.

Published in:

BMC Genomics, 2020, v. 21, p. 1, doi. 10.1186/s12864-020-6657-2

By:

Jayakumar, Vasanthan;
Ishii, Hiromi;
Seki, Misato;
Kumita, Wakako;
Inoue, Takashi;
Hase, Sumitaka;
Sato, Kengo;
Okano, Hideyuki;
Sasaki, Erika;
Sakakibara, Yasubumi

Publication type:

Article

EpiMOLAS: an intuitive web-based framework for genome-wide DNA methylation analysis.

Published in:

BMC Genomics, 2020, v. 21, p. 1, doi. 10.1186/s12864-019-6404-8

By:

Su, Sheng-Yao;
Lu, I-Hsuan;
Cheng, Wen-Chih;
Chung, Wei-Chun;
Chen, Pao-Yang;
Ho, Jan-Ming;
Chen, Shu-Hwa;
Lin, Chung-Yen

Publication type:

Article