Works matching IS 14712164 AND DT 2019 AND VI 20 AND IP 1

Results: 916

Genetic dissection of canine hip dysplasia phenotypes and osteoarthritis reveals three novel loci.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6422-6

By:

Mikkola, Lea;
Holopainen, Saila;
Pessa-Morikawa, Tiina;
Lappalainen, Anu K.;
Hytönen, Marjo K.;
Lohi, Hannes;
Iivanainen, Antti

Publication type:

Article

Genomic selection for non-key traits in radiata pine when the documented pedigree is corrected using DNA marker information.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6420-8

By:

Li, Yongjun;
Klápště, Jaroslav;
Telfer, Emily;
Wilcox, Phillip;
Graham, Natalie;
Macdonald, Lucy;
Dungey, Heidi S.

Publication type:

Article

Full-length transcriptome sequences of Agropyron cristatum facilitate the prediction of putative genes for thousand-grain weight in a wheat-A. cristatum translocation line.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6416-4

By:

Zhou, Shenghui;
Zhang, Jinpeng;
Han, Haiming;
Zhang, Jing;
Ma, Huihui;
Zhang, Zhi;
Lu, Yuqing;
Liu, Weihua;
Yang, Xinming;
Li, Xiuquan;
Li, Lihui

Publication type:

Article

Putative biomarkers for predicting tumor sample purity based on gene expression data.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6412-8

By:

Li, Yuanyuan;
Umbach, David M.;
Bingham, Adrienna;
Li, Qi-Jing;
Zhuang, Yuan;
Li, Leping

Publication type:

Article

Effect of growth rate on transcriptomic responses to immune stimulation in wild-type, domesticated, and GH-transgenic coho salmon.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6408-4

By:

Kim, Jin-Hyoung;
Macqueen, Daniel J.;
Winton, James R.;
Hansen, John D.;
Park, Hyun;
Devlin, Robert H.

Publication type:

Article

Investigating host-bacterial interactions among enteric pathogens.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6398-2

By:

Bose, Tungadri;
Venkatesh, K. V.;
Mande, Sharmila S.

Publication type:

Article

A ligation-based single-stranded library preparation method to analyze cell-free DNA and synthetic oligos.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6355-0

By:

Troll, Christopher J.;
Kapp, Joshua;
Rao, Varsha;
Harkins, Kelly M.;
Cole, Charles;
Naughton, Colin;
Morgan, Jessica M.;
Shapiro, Beth;
Green, Richard E.

Publication type:

Article

A computational method to predict topologically associating domain boundaries combining histone Marks and sequence information.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6303-z

By:

Gan, Wei;
Luo, Juan;
Li, Yi Zhou;
Guo, Jia Li;
Zhu, Min;
Li, Meng Long

Publication type:

Article

A novel algorithm for alignment of multiple PPI networks based on simulated annealing.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6302-0

By:

Hu, Jialu;
He, Junhao;
Li, Jing;
Gao, Yiqun;
Zheng, Yan;
Shang, Xuequn

Publication type:

Article

Identification of self-interacting proteins by integrating random projection classifier and finite impulse response filter.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6301-1

By:

Chen, Zhan-Heng;
You, Zhu-Hong;
Li, Li-Ping;
Wang, Yan-Bin;
Qiu, Yu;
Hu, Peng-Wei

Publication type:

Article

An efficient simulated annealing algorithm for the RNA secondary structure prediction with Pseudoknots.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6300-2

By:

Kai, Zhang;
Yuting, Wang;
Yulin, Lv;
Jun, Liu;
Juanjuan, He

Publication type:

Article

A generative model for constructing nucleic acid sequences binding to a protein.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6299-4

By:

Im, Jinho;
Park, Byungkyu;
Han, Kyungsook

Publication type:

Article

D3GRN: a data driven dynamic network construction method to infer gene regulatory networks.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6298-5

By:

Chen, Xiang;
Li, Min;
Zheng, Ruiqing;
Wu, Fang-Xiang;
Wang, Jianxin

Publication type:

Article

Network analysis exposes core functions in major lifestyles of fungal and oomycete plant pathogens.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6409-3

By:

Pandaranayaka, Eswari PJ;
Frenkel, Omer;
Elad, Yigal;
Prusky, Dov;
Harel, Arye

Publication type:

Article

Archaic mitochondrial DNA inserts in modern day nuclear genomes.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6392-8

By:

Bücking, Robert;
Cox, Murray P;
Hudjashov, Georgi;
Saag, Lauri;
Sudoyo, Herawati;
Stoneking, Mark

Publication type:

Article

Different transcriptional response between susceptible and resistant common carp (Cyprinus carpio) fish hints on the mechanism of CyHV-3 disease resistance.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6391-9

By:

Tadmor-Levi, Roni;
Doron-Faigenboim, Adi;
Marcos-Hadad, Evgeniya;
Petit, Jules;
Hulata, Gideon;
Forlenza, Maria;
Wiegertjes, Geert F.;
David, Lior

Publication type:

Article

Transcriptome analysis of the fungal pathogen Rosellinia necatrix during infection of a susceptible avocado rootstock identifies potential mechanisms of pathogenesis.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6387-5

By:

Zumaquero, A.;
Kanematsu, S.;
Nakayashiki, H.;
Matas, A.;
Martínez-Ferri, E.;
Barceló-Muñóz, A.;
Pliego-Alfaro, F.;
López-Herrera, C.;
Cazorla, F. M.;
Pliego, C.

Publication type:

Article

PaCBAM: fast and scalable processing of whole exome and targeted sequencing data.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6386-6

By:

Valentini, Samuel;
Fedrizzi, Tarcisio;
Demichelis, Francesca;
Romanel, Alessandro

Publication type:

Article

Exploring the changing landscape of cell-to-cell variation after CTCF knockdown via single cell RNA-seq.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6379-5

By:

Wang, Wei;
Ren, Gang;
Hong, Ni;
Jin, Wenfei

Publication type:

Article

Host plant adaptation in the polyphagous whitefly, Trialeurodes vaporariorum, is associated with transcriptional plasticity and altered sensitivity to insecticides.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6397-3

By:

Pym, Adam;
Singh, Kumar Saurabh;
Nordgren, Åsa;
Davies, T. G. Emyr;
Zimmer, Christoph T.;
Elias, Jan;
Slater, Russell;
Bass, Chris

Publication type:

Article

Tissue-specific transposon-associated small RNAs in the gymnosperm tree, Norway spruce.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6385-7

By:

Nakamura, Miyuki;
Köhler, Claudia;
Hennig, Lars

Publication type:

Article

RNA-seq, de novo transcriptome assembly and flavonoid gene analysis in 13 wild and cultivated berry fruit species with high content of phenolics.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6183-2

By:

Thole, Vera;
Bassard, Jean-Etienne;
Ramírez-González, Ricardo;
Trick, Martin;
Ghasemi Afshar, Bijan;
Breitel, Dario;
Hill, Lionel;
Foito, Alexandre;
Shepherd, Louise;
Freitag, Sabine;
Nunes dos Santos, Cláudia;
Menezes, Regina;
Bañados, Pilar;
Naesby, Michael;
Wang, Liangsheng;
Sorokin, Artem;
Tikhonova, Olga;
Shelenga, Tatiana;
Stewart, Derek;
Vain, Philippe

Publication type:

Article

New insights into mammalian sex chromosome structure and evolution using high-quality sequences from bovine X and Y chromosomes.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6364-z

By:

Liu, Ruijie;
Low, Wai Yee;
Tearle, Rick;
Koren, Sergey;
Ghurye, Jay;
Rhie, Arang;
Phillippy, Adam M.;
Rosen, Benjamin D.;
Bickhart, Derek M.;
Smith, Timothy P. L.;
Hiendleder, Stefan;
Williams, John L.

Publication type:

Article

Network analysis uncovers putative genes affecting resistance to tick infestation in Braford cattle skin.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6360-3

By:

Moré, Daniela D.;
Cardoso, Fernando F.;
Mudadu, Maurício A.;
Malagó-Jr, Wilson;
Gulias-Gomes, Claudia C.;
Sollero, Bruna P.;
Ibelli, Adriana M. G.;
Coutinho, Luiz L.;
Regitano, Luciana C. A.

Publication type:

Article

Genome-wide analysis and characterization of F-box gene family in Gossypium hirsutum L.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6280-2

By:

Zhang, Shulin;
Tian, Zailong;
Li, Haipeng;
Guo, Yutao;
Zhang, Yanqi;
Roberts, Jeremy A.;
Zhang, Xuebin;
Miao, Yuchen

Publication type:

Article

Complete genome sequences of Streptomyces spp. isolated from disease-suppressive soils.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6279-8

By:

Heinsch, Stephen C.;
Hsu, Szu-Yi;
Otto-Hanson, Lindsey;
Kinkel, Linda;
Smanski, Michael J.

Publication type:

Article

Combining transcriptomics and metabolomics to reveal the underlying molecular mechanism of ergosterol biosynthesis during the fruiting process of Flammulina velutipes.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6370-1

By:

Wang, Ruihong;
Ma, Pengda;
Li, Chen;
Xiao, Lingang;
Liang, Zongsuo;
Dong, Juane

Publication type:

Article

Transcriptome analysis reveals plasticity in gene regulation due to environmental cues in Primula sikkimensis, a high altitude plant species.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6354-1

By:

Gurung, Priya Darshini;
Upadhyay, Atul Kumar;
Bhardwaj, Pardeep Kumar;
Sowdhamini, Ramanathan;
Ramakrishnan, Uma

Publication type:

Article

Protein expression profiles in Meishan and Duroc sows during mid-gestation reveal differences affecting uterine capacity, endometrial receptivity, and the maternal–fetal Interface.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6353-2

By:

Wang, Kejun;
Yang, Kaijie;
Xu, Qiao;
Liu, Yufang;
Li, Wenting;
Bai, Ying;
Wang, Jve;
Ding, Cui;
Liu, Ximing;
Tang, Qiguo;
Luo, Yabiao;
Zheng, Jie;
Wu, Keliang;
Fang, Meiying

Publication type:

Article

Comparative transcriptomic analysis of surf clams (Paphia undulate) infected with two strains of Vibrio spp. reveals the identity of key immune genes involved in host defense.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6351-4

By:

Yu, Mingjia;
Zheng, Lin;
Wang, Xiaobo;
Wu, Minfu;
Qi, Ming;
Fu, Wandong;
Zhang, Yang

Publication type:

Article

Molecular evolution and expression of opsin genes in Hydra vulgaris.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6349-y

By:

Macias-Muñoz, Aide;
Murad, Rabi;
Mortazavi, Ali

Publication type:

Article

NaCl-responsive ROS scavenging and energy supply in alkaligrass callus revealed from proteomic analysis.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6325-6

By:

Zhang, Yongxue;
Zhang, Yue;
Yu, Juanjuan;
Zhang, Heng;
Wang, Liyue;
Wang, Sining;
Guo, Siyi;
Miao, Yuchen;
Chen, Sixue;
Li, Ying;
Dai, Shaojun

Publication type:

Article

Genome-wide identification and expression profiling of glutathione transferase gene family under multiple stresses and hormone treatments in wheat (Triticum aestivum L.).

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6374-x

By:

Wang, Ruibin;
Ma, Jingfei;
Zhang, Qian;
Wu, Chunlai;
Zhao, Hongyan;
Wu, Yanan;
Yang, Guangxiao;
He, Guangyuan

Publication type:

Article

Transcriptome-wide association study identifies putative elicitors/suppressor of Puccinia graminis f. sp. tritici that modulate barley rpg4-mediated stem rust resistance.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6369-7

By:

Sharma Poudel, Roshan;
Richards, Jonathan;
Shrestha, Subidhya;
Solanki, Shyam;
Brueggeman, Robert

Publication type:

Article

Genetic deletion of Sphk2 confers protection against Pseudomonas aeruginosa mediated differential expression of genes related to virulent infection and inflammation in mouse lung.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6367-9

By:

Ebenezer, David L.;
Fu, Panfeng;
Krishnan, Yashaswin;
Maienschein-Cline, Mark;
Hu, Hong;
Jung, Segun;
Madduri, Ravi;
Arbieva, Zarema;
Harijith, Anantha;
Natarajan, Viswanathan

Publication type:

Article

A phenomics-based approach for the detection and interpretation of shared genetic influences on 29 biochemical indices in southern Chinese men.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6363-0

By:

Hu, Yanling;
Tan, Aihua;
Yu, Lei;
Hou, Chenyang;
Kuang, Haofa;
Wu, Qunying;
Su, Jinghan;
Zhou, Qingniao;
Zhu, Yuanyuan;
Zhang, Chenqi;
Wei, Wei;
Li, Lianfeng;
Li, Weidong;
Huang, Yuanjie;
Huang, Hongli;
Xie, Xing;
Lu, Tingxi;
Zhang, Haiying;
Yang, Xiaobo;
Gao, Yong

Publication type:

Article

Ectopic expression of Medicago truncatula homeodomain finger protein, MtPHD6, enhances drought tolerance in Arabidopsis.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6350-5

By:

Quan, Wenli;
Liu, Xun;
Wang, Lihua;
Yin, Mingzhu;
Yang, Li;
Chan, Zhulong

Publication type:

Article

Identification of genetic loci and candidate genes related to soybean flowering through genome wide association study.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6324-7

By:

Li, Minmin;
Liu, Ying;
Tao, Yahan;
Xu, Chongjing;
Li, Xin;
Zhang, Xiaoming;
Han, Yingpeng;
Yang, Xue;
Sun, Jingzhe;
Li, Wenbin;
Li, Dongmei;
Zhao, Xue;
Zhao, Lin

Publication type:

Article

ReVac: a reverse vaccinology computational pipeline for prioritization of prokaryotic protein vaccine candidates.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6195-y

By:

D'Mello, Adonis;
Ahearn, Christian P.;
Murphy, Timothy F.;
Tettelin, Hervé

Publication type:

Article

Convergent degeneration of olfactory receptor gene repertoires in marine mammals.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6290-0

By:

Ake Liu;
Funan He;
Libing Shen;
Ruixiang Liu;
Zhijun Wang;
Jingqi Zhou

Publication type:

Article

Transcriptome sequencing of Saccharina japonica sporophytes during whole developmental periods reveals regulatory networks underlying alginate and mannitol biosynthesis.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6366-x

By:

Shao, Zhanru;
Zhang, Pengyan;
Lu, Chang;
Li, Shaoxuan;
Chen, Zhihang;
Wang, Xiuliang;
Duan, Delin

Publication type:

Article

Genomes and secretomes of Ascomycota fungi reveal diverse functions in plant biomass decomposition and pathogenesis.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6358-x

By:

Challacombe, Jean F.;
Hesse, Cedar N.;
Bramer, Lisa M.;
McCue, Lee Ann;
Lipton, Mary;
Purvine, Samuel;
Nicora, Carrie;
Gallegos-Graves, La Verne;
Porras-Alfaro, Andrea;
Kuske, Cheryl R.

Publication type:

Article

From bud formation to flowering: transcriptomic state defines the cherry developmental phases of sweet cherry bud dormancy.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6348-z

By:

Vimont, Noémie;
Fouché, Mathieu;
Campoy, José Antonio;
Tong, Meixuezi;
Arkoun, Mustapha;
Yvin, Jean-Claude;
Wigge, Philip A.;
Dirlewanger, Elisabeth;
Cortijo, Sandra;
Wenden, Bénédicte

Publication type:

Article

Transcriptome analysis reveals mechanism underlying the differential intestinal functionality of laying hens in the late phase and peak phase of production.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6320-y

By:

Wang, Wei-wei;
Wang, Jing;
Zhang, Hai-jun;
Wu, Shu-geng;
Qi, Guang-hai

Publication type:

Article

The genomic diversification of grapevine clones.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6211-2

By:

Vondras, Amanda M.;
Minio, Andrea;
Blanco-Ulate, Barbara;
Figueroa-Balderas, Rosa;
Penn, Michael A.;
Zhou, Yongfeng;
Seymour, Danelle;
Ye, Zirou;
Liang, Dingren;
Espinoza, Lucero K.;
Anderson, Michael M.;
Walker, M. Andrew;
Gaut, Brandon;
Cantu, Dario

Publication type:

Article

Transcriptomic analyses reveal physiological changes in sweet orange roots affected by citrus blight.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6339-0

By:

Fu, Shimin;
Shao, Jonathan;
Roy, Avijit;
Brlansky, Ronald H.;
Zhou, Changyong;
Hartung, John S.

Publication type:

Article

BaRTv1.0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6243-7

By:

Rapazote-Flores, Paulo;
Bayer, Micha;
Milne, Linda;
Mayer, Claus-Dieter;
Fuller, John;
Guo, Wenbin;
Hedley, Pete E.;
Morris, Jenny;
Halpin, Claire;
Kam, Jason;
McKim, Sarah M.;
Zwirek, Monika;
Casao, M. Cristina;
Barakate, Abdellah;
Schreiber, Miriam;
Stephen, Gordon;
Zhang, Runxuan;
Brown, John W. S.;
Waugh, Robbie;
Simpson, Craig G.

Publication type:

Article

Characterization of a wheat–tetraploid Thinopyrum elongatum 1E(1D) substitution line K17–841-1 by cytological and phenotypic analysis and developed molecular markers.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6359-9

By:

Li, Daiyan;
Zhang, Juwei;
Liu, Haijiao;
Tan, Binwen;
Zhu, Wei;
Xu, Lili;
Wang, Yi;
Zeng, Jian;
Fan, Xing;
Sha, Lina;
Zhang, Haiqin;
Ma, Jian;
Chen, Guoyue;
Zhou, Yonghong;
Kang, Houyang

Publication type:

Article

miR-380-3p regulates melanogenesis by targeting SOX6 in melanocytes from alpacas (Vicugna pacos).

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6343-4

By:

Liu, Xuexian;
Du, Bin;
Zhang, Pengqian;
Zhang, Junzhen;
Zhu, Zhiwei;
Liu, Bo;
Fan, Ruiwen

Publication type:

Article

Mating precedes selective immune priming which is maintained throughout bumblebee queen diapause.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6314-9

By:

Colgan, Thomas J.;
Finlay, Sive;
Brown, Mark J. F.;
Carolan, James C.

Publication type:

Article