Works matching IS 14712164 AND DT 2019 AND VI 20

Results: 1033

An ancestry informative marker panel design for individual ancestry estimation of Hispanic population using whole exome sequencing data.

Published in:

BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6333-6

By:

Wang, Li-Ju;
Zhang, Catherine W.;
Su, Sophia C.;
Chen, Hung-I H.;
Chiu, Yu-Chiao;
Lai, Zhao;
Bouamar, Hakim;
Ramirez, Amelie G.;
Cigarroa, Francisco G.;
Sun, Lu-Zhe;
Chen, Yidong

Publication type:

Article

Investigating the role of super-enhancer RNAs underlying embryonic stem cell differentiation.

Published in:

BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6293-x

By:

Hao-Chun Chang;
Hsuan-Cheng Huang;
Hsueh-Fen Juan;
Chia-Lang Hsu

Publication type:

Article

De novo sequencing of the transcriptome reveals regulators of the floral transition in Fargesia macclureana (Poaceae).

Published in:

BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6418-2

By:

Li, Ying;
Zhang, Chunxia;
Yang, Kebin;
Shi, Jingjing;
Ding, Yulong;
Gao, Zhimin

Publication type:

Article

Genomic identification and characterization of MYC family genes in wheat (Triticum aestivum L.).

Published in:

BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6373-y

By:

Bai, Jian-fang;
Wang, Yu-kun;
Guo, Li-ping;
Guo, Xiao-ming;
Guo, Hao-yu;
Yuan, Shao-hua;
Duan, Wen-jing;
Liu, Zihan;
Zhao, Chang-ping;
Zhang, Feng-ting;
Zhang, Li-ping

Publication type:

Article

The transcriptomic signature of low aggression in honey bees resembles a response to infection.

Published in:

BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6417-3

By:

Rittschof, Clare C.;
Rubin, Benjamin E. R.;
Palmer, Joseph H.

Publication type:

Article

Deep analysis and optimization of CARD antibiotic resistance gene discovery models.

Published in:

BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6318-5

By:

Haobin Yao;
Siu-Ming Yiu

Publication type:

Article

Hydrogen cyanamide induces grape bud endodormancy release through carbohydrate metabolism and plant hormone signaling.

Published in:

BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6368-8

By:

Liang, Dong;
Huang, Xiaojing;
Shen, Yanqiu;
Shen, Tian;
Zhang, Huifen;
Lin, Lijin;
Wang, Jin;
Deng, Qunxian;
Lyu, Xiulan;
Xia, Hui

Publication type:

Article

Comparative genomics of Alternaria species provides insights into the pathogenic lifestyle of Alternaria brassicae – a pathogen of the Brassicaceae family.

Published in:

BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6414-6

By:

Rajarammohan, Sivasubramanian;
Paritosh, Kumar;
Pental, Deepak;
Kaur, Jagreet

Publication type:

Article

Proximal femoral head transcriptome reveals novel candidate genes related to epiphysiolysis in broiler chickens.

Published in:

BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6411-9

By:

de Oliveira Peixoto, Jane;
Savoldi, Igor Ricardo;
Ibelli, Adriana Mércia Guaratini;
Cantão, Maurício Egídio;
Jaenisch, Fátima Regina Ferreira;
Giachetto, Poliana Fernanda;
Settles, Matthew Lee;
Zanella, Ricardo;
Marchesi, Jorge Augusto Petroli;
Pandolfi, José Rodrigo;
Coutinho, Luiz Lehmann;
Ledur, Mônica Corrêa

Publication type:

Article

Cloud accelerated alignment and assembly of full-length single-cell RNA-seq data using Falco.

Published in:

BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6341-6

By:

Yang, Andrian;
Kishore, Abhinav;
Phipps, Benjamin;
Ho, Joshua W. K.

Publication type:

Article

Genome sequencing of Mycobacterium pinnipedii strains: genetic characterization and evidence of superinfection in a South American sea lion (Otaria flavescens).

Published in:

BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6407-5

By:

Silva-Pereira, Taiana T.;
Ikuta, Cássia Y.;
Zimpel, Cristina K.;
Camargo, Naila C. S.;
de Souza Filho, Antônio F.;
Ferreira Neto, José S.;
Heinemann, Marcos B.;
Guimarães, Ana M. S.

Publication type:

Article

Chicken adaptive response to low energy diet: main role of the hypothalamic lipid metabolism revealed by a phenotypic and multi-tissue transcriptomic approach.

Published in:

BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6384-8

By:

Jehl, F.;
Désert, C.;
Klopp, C.;
Brenet, M.;
Rau, A.;
Leroux, S.;
Boutin, M.;
Lagoutte, L.;
Muret, K.;
Blum, Y.;
Esquerré, D.;
Gourichon, D.;
Burlot, T.;
Collin, A.;
Pitel, F.;
Benani, A.;
Zerjal, T.;
Lagarrigue, S.

Publication type:

Article

High-level integration of murine intestinal transcriptomics data highlights the importance of the complement system in mucosal homeostasis.

Published in:

BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6390-x

By:

Benis, Nirupama;
Wells, Jerry M.;
Smits, Mari A.;
Kar, Soumya Kanti;
van der Hee, Bart;
dos Santos, Vitor A. P. Martins;
Suarez-Diez, Maria;
Schokker, Dirkjan

Publication type:

Article

normGAM: an R package to remove systematic biases in genome architecture mapping data.

Published in:

BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6331-8

By:

Liu, Tong;
Wang, Zheng

Publication type:

Article

Human protein-RNA interaction network is highly stable across mammals.

Published in:

BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6330-9

By:

Ramakrishnan, Aarthi;
Janga, Sarath Chandra

Publication type:

Article

SMaSH: Sample matching using SNPs in humans.

Published in:

BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6332-7

By:

Westphal, Maximillian;
Frankhouser, David;
Sonzone, Carmine;
Shields, Peter G.;
Yan, Pearlly;
Bundschuh, Ralf

Publication type:

Article

iPseU-NCP: Identifying RNA pseudouridine sites using random forest and NCP-encoded features.

Published in:

BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6357-y

By:

Nguyen-Vo, Thanh-Hoang;
Nguyen, Quang H.;
Do, Trang T.T.;
Nguyen, Thien-Ngan;
Rahardja, Susanto;
Nguyen, Binh P.

Publication type:

Article

Sketch distance-based clustering of chromosomes for large genome database compression.

Published in:

BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6310-0

By:

Tang, Tao;
Liu, Yuansheng;
Zhang, Buzhong;
Su, Benyue;
Li, Jinyan

Publication type:

Article

Different transcriptional response between susceptible and resistant common carp (Cyprinus carpio) fish hints on the mechanism of CyHV-3 disease resistance.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6391-9

By:

Tadmor-Levi, Roni;
Doron-Faigenboim, Adi;
Marcos-Hadad, Evgeniya;
Petit, Jules;
Hulata, Gideon;
Forlenza, Maria;
Wiegertjes, Geert F.;
David, Lior

Publication type:

Article

Capture of complete ciliate chromosomes in single sequencing reads reveals widespread chromosome isoforms.

Published in:

BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6189-9

By:

Lindblad, Kelsi A.;
Pathmanathan, Jananan S.;
Moreira, Sandrine;
Bracht, John R.;
Sebra, Robert P.;
Hutton, Elizabeth R.;
Landweber, Laura F.

Publication type:

Article

A novel algorithm for alignment of multiple PPI networks based on simulated annealing.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6302-0

By:

Hu, Jialu;
He, Junhao;
Li, Jing;
Gao, Yiqun;
Zheng, Yan;
Shang, Xuequn

Publication type:

Article

ManiNetCluster: a novel manifold learning approach to reveal the functional links between gene networks.

Published in:

BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6329-2

By:

Nguyen, Nam D.;
Blaby, Ian K.;
Wang, Daifeng

Publication type:

Article

Archaic mitochondrial DNA inserts in modern day nuclear genomes.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6392-8

By:

Bücking, Robert;
Cox, Murray P;
Hudjashov, Georgi;
Saag, Lauri;
Sudoyo, Herawati;
Stoneking, Mark

Publication type:

Article

Clonal reconstruction from time course genomic sequencing data.

Published in:

BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6328-3

By:

Ismail, Wazim Mohammed;
Tang, Haixu

Publication type:

Article

The International Conference on Intelligent Biology and Medicine 2019 (ICIBM 2019): conference summary and innovations in genomics.

Published in:

2019

By:

Mathé, Ewy;
Zhang, Chi;
Wang, Kai;
Ning, Xia;
Guo, Yan;
Zhao, Zhongming

Publication type:

Editorial

Identification of self-interacting proteins by integrating random projection classifier and finite impulse response filter.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6301-1

By:

Chen, Zhan-Heng;
You, Zhu-Hong;
Li, Li-Ping;
Wang, Yan-Bin;
Qiu, Yu;
Hu, Peng-Wei

Publication type:

Article

Genetic dissection of canine hip dysplasia phenotypes and osteoarthritis reveals three novel loci.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6422-6

By:

Mikkola, Lea;
Holopainen, Saila;
Pessa-Morikawa, Tiina;
Lappalainen, Anu K.;
Hytönen, Marjo K.;
Lohi, Hannes;
Iivanainen, Antti

Publication type:

Article

Genomic selection for non-key traits in radiata pine when the documented pedigree is corrected using DNA marker information.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6420-8

By:

Li, Yongjun;
Klápště, Jaroslav;
Telfer, Emily;
Wilcox, Phillip;
Graham, Natalie;
Macdonald, Lucy;
Dungey, Heidi S.

Publication type:

Article

Full-length transcriptome sequences of Agropyron cristatum facilitate the prediction of putative genes for thousand-grain weight in a wheat-A. cristatum translocation line.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6416-4

By:

Zhou, Shenghui;
Zhang, Jinpeng;
Han, Haiming;
Zhang, Jing;
Ma, Huihui;
Zhang, Zhi;
Lu, Yuqing;
Liu, Weihua;
Yang, Xinming;
Li, Xiuquan;
Li, Lihui

Publication type:

Article

Putative biomarkers for predicting tumor sample purity based on gene expression data.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6412-8

By:

Li, Yuanyuan;
Umbach, David M.;
Bingham, Adrienna;
Li, Qi-Jing;
Zhuang, Yuan;
Li, Leping

Publication type:

Article

Effect of growth rate on transcriptomic responses to immune stimulation in wild-type, domesticated, and GH-transgenic coho salmon.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6408-4

By:

Kim, Jin-Hyoung;
Macqueen, Daniel J.;
Winton, James R.;
Hansen, John D.;
Park, Hyun;
Devlin, Robert H.

Publication type:

Article

A ligation-based single-stranded library preparation method to analyze cell-free DNA and synthetic oligos.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6355-0

By:

Troll, Christopher J.;
Kapp, Joshua;
Rao, Varsha;
Harkins, Kelly M.;
Cole, Charles;
Naughton, Colin;
Morgan, Jessica M.;
Shapiro, Beth;
Green, Richard E.

Publication type:

Article

Investigating host-bacterial interactions among enteric pathogens.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6398-2

By:

Bose, Tungadri;
Venkatesh, K. V.;
Mande, Sharmila S.

Publication type:

Article

A computational method to predict topologically associating domain boundaries combining histone Marks and sequence information.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6303-z

By:

Gan, Wei;
Luo, Juan;
Li, Yi Zhou;
Guo, Jia Li;
Zhu, Min;
Li, Meng Long

Publication type:

Article

An efficient simulated annealing algorithm for the RNA secondary structure prediction with Pseudoknots.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6300-2

By:

Kai, Zhang;
Yuting, Wang;
Yulin, Lv;
Jun, Liu;
Juanjuan, He

Publication type:

Article

Network analysis exposes core functions in major lifestyles of fungal and oomycete plant pathogens.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6409-3

By:

Pandaranayaka, Eswari PJ;
Frenkel, Omer;
Elad, Yigal;
Prusky, Dov;
Harel, Arye

Publication type:

Article

Transcriptome analysis of the fungal pathogen Rosellinia necatrix during infection of a susceptible avocado rootstock identifies potential mechanisms of pathogenesis.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6387-5

By:

Zumaquero, A.;
Kanematsu, S.;
Nakayashiki, H.;
Matas, A.;
Martínez-Ferri, E.;
Barceló-Muñóz, A.;
Pliego-Alfaro, F.;
López-Herrera, C.;
Cazorla, F. M.;
Pliego, C.

Publication type:

Article

A generative model for constructing nucleic acid sequences binding to a protein.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6299-4

By:

Im, Jinho;
Park, Byungkyu;
Han, Kyungsook

Publication type:

Article

PaCBAM: fast and scalable processing of whole exome and targeted sequencing data.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6386-6

By:

Valentini, Samuel;
Fedrizzi, Tarcisio;
Demichelis, Francesca;
Romanel, Alessandro

Publication type:

Article

D3GRN: a data driven dynamic network construction method to infer gene regulatory networks.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6298-5

By:

Chen, Xiang;
Li, Min;
Zheng, Ruiqing;
Wu, Fang-Xiang;
Wang, Jianxin

Publication type:

Article

Exploring the changing landscape of cell-to-cell variation after CTCF knockdown via single cell RNA-seq.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6379-5

By:

Wang, Wei;
Ren, Gang;
Hong, Ni;
Jin, Wenfei

Publication type:

Article

JCDB: a comprehensive knowledge base for Jatropha curcas, an emerging model for woody energy plants.

Published in:

BMC Genomics, 2019, v. 20, n. 9, p. 1, doi. 10.1186/s12864-019-6356-z

By:

Zhang, Xuan;
Pan, Bang-Zhen;
Chen, Maosheng;
Chen, Wen;
Li, Jing;
Xu, Zeng-Fu;
Liu, Changning

Publication type:

Article

iEnhancer-ECNN: identifying enhancers and their strength using ensembles of convolutional neural networks.

Published in:

BMC Genomics, 2019, v. 20, n. 9, p. 1, doi. 10.1186/s12864-019-6336-3

By:

Nguyen, Quang H.;
Nguyen-Vo, Thanh-Hoang;
Le, Nguyen Quoc Khanh;
Do, Trang T.T.;
Rahardja, Susanto;
Nguyen, Binh P.

Publication type:

Article

Classification of adaptor proteins using recurrent neural networks and PSSM profiles.

Published in:

BMC Genomics, 2019, v. 20, n. 9, p. 1, doi. 10.1186/s12864-019-6335-4

By:

Khanh Le, Nguyen Quoc;
Nguyen, Quang H.;
Chen, Xuan;
Rahardja, Susanto;
Nguyen, Binh P.

Publication type:

Article

Construction of competing endogenous RNA networks from paired RNA-seq data sets by pointwise mutual information.

Published in:

BMC Genomics, 2019, v. 20, n. 9, p. 1, doi. 10.1186/s12864-019-6321-x

By:

Lan, Chaowang;
Peng, Hui;
Hutvagner, Gyorgy;
Li, Jinyan

Publication type:

Article

Identification of highly conserved, serotype-specific dengue virus sequences: implications for vaccine design.

Published in:

BMC Genomics, 2019, v. 20, n. 9, p. 1, doi. 10.1186/s12864-019-6311-z

By:

Chong, Li Chuin;
Khan, Asif M.

Publication type:

Article

scReClassify: post hoc cell type classification of single-cell rNA-seq data.

Published in:

BMC Genomics, 2019, v. 20, n. 9, p. 1, doi. 10.1186/s12864-019-6305-x

By:

Kim, Taiyun;
Lo, Kitty;
Geddes, Thomas A.;
Kim, Hani Jieun;
Yang, Jean Yee Hwa;
Yang, Pengyi

Publication type:

Article

Refining modules to determine functionally significant clusters in molecular networks.

Published in:

BMC Genomics, 2019, v. 20, n. 9, p. 1, doi. 10.1186/s12864-019-6294-9

By:

Kaalia, Rama;
Rajapakse, Jagath C.

Publication type:

Article

Rule-based meta-analysis reveals the major role of PB2 in influencing influenza A virus virulence in mice.

Published in:

BMC Genomics, 2019, v. 20, n. 9, p. 1, doi. 10.1186/s12864-019-6295-8

By:

Ivan, Fransiskus Xaverius;
Chee Keong Kwoh

Publication type:

Article

MS2CNN: predicting MS/MS spectrum based on protein sequence using deep convolutional neural networks.

Published in:

BMC Genomics, 2019, v. 20, n. 9, p. 1, doi. 10.1186/s12864-019-6297-6

By:

Yang-Ming Lin;
Ching-Tai Chen;
Jia-Ming Chang

Publication type:

Article