Works matching IS 14712164 AND DT 2019 AND VI 20

Results: 1033

MS2CNN: predicting MS/MS spectrum based on protein sequence using deep convolutional neural networks.

Published in:

BMC Genomics, 2019, v. 20, n. 9, p. 1, doi. 10.1186/s12864-019-6297-6

By:

Yang-Ming Lin;
Ching-Tai Chen;
Jia-Ming Chang

Publication type:

Article

Genome-wide identification, phylogeny, and expression analysis of the SBP-box gene family in Euphorbiaceae.

Published in:

BMC Genomics, 2019, v. 20, n. 9, p. 1, doi. 10.1186/s12864-019-6319-4

By:

Jing Li;
Xiaoyang Gao;
Shiye Sang;
Changning Liu

Publication type:

Article

JCDB: a comprehensive knowledge base for Jatropha curcas, an emerging model for woody energy plants.

Published in:

BMC Genomics, 2019, v. 20, n. 9, p. 1, doi. 10.1186/s12864-019-6356-z

By:

Zhang, Xuan;
Pan, Bang-Zhen;
Chen, Maosheng;
Chen, Wen;
Li, Jing;
Xu, Zeng-Fu;
Liu, Changning

Publication type:

Article

Refining modules to determine functionally significant clusters in molecular networks.

Published in:

BMC Genomics, 2019, v. 20, n. 9, p. 1, doi. 10.1186/s12864-019-6294-9

By:

Kaalia, Rama;
Rajapakse, Jagath C.

Publication type:

Article

iEnhancer-ECNN: identifying enhancers and their strength using ensembles of convolutional neural networks.

Published in:

BMC Genomics, 2019, v. 20, n. 9, p. 1, doi. 10.1186/s12864-019-6336-3

By:

Nguyen, Quang H.;
Nguyen-Vo, Thanh-Hoang;
Le, Nguyen Quoc Khanh;
Do, Trang T.T.;
Rahardja, Susanto;
Nguyen, Binh P.

Publication type:

Article

The transcriptome variations of Panaxnotoginseng roots treated with different forms of nitrogen fertilizers.

Published in:

BMC Genomics, 2019, v. 20, n. 9, p. 1, doi. 10.1186/s12864-019-6340-7

By:

Ou, Xiaohong;
Li, Shipeng;
Liao, Peiran;
Cui, Xiuming;
Zheng, Binglian;
Yang, Ye;
Liu, Dahui;
Zheng, Yun

Publication type:

Article

Rule-based meta-analysis reveals the major role of PB2 in influencing influenza A virus virulence in mice.

Published in:

BMC Genomics, 2019, v. 20, n. 9, p. 1, doi. 10.1186/s12864-019-6295-8

By:

Ivan, Fransiskus Xaverius;
Chee Keong Kwoh

Publication type:

Article

Classification of adaptor proteins using recurrent neural networks and PSSM profiles.

Published in:

BMC Genomics, 2019, v. 20, n. 9, p. 1, doi. 10.1186/s12864-019-6335-4

By:

Khanh Le, Nguyen Quoc;
Nguyen, Quang H.;
Chen, Xuan;
Rahardja, Susanto;
Nguyen, Binh P.

Publication type:

Article

Construction of competing endogenous RNA networks from paired RNA-seq data sets by pointwise mutual information.

Published in:

BMC Genomics, 2019, v. 20, n. 9, p. 1, doi. 10.1186/s12864-019-6321-x

By:

Lan, Chaowang;
Peng, Hui;
Hutvagner, Gyorgy;
Li, Jinyan

Publication type:

Article

Identification of highly conserved, serotype-specific dengue virus sequences: implications for vaccine design.

Published in:

BMC Genomics, 2019, v. 20, n. 9, p. 1, doi. 10.1186/s12864-019-6311-z

By:

Chong, Li Chuin;
Khan, Asif M.

Publication type:

Article

scReClassify: post hoc cell type classification of single-cell rNA-seq data.

Published in:

BMC Genomics, 2019, v. 20, n. 9, p. 1, doi. 10.1186/s12864-019-6305-x

By:

Kim, Taiyun;
Lo, Kitty;
Geddes, Thomas A.;
Kim, Hani Jieun;
Yang, Jean Yee Hwa;
Yang, Pengyi

Publication type:

Article

Performance of rotation forest ensemble classifier and feature extractor in predicting protein interactions using amino acid sequences.

Published in:

BMC Genomics, 2019, v. 20, n. 9, p. 1, doi. 10.1186/s12864-019-6304-y

By:

Bustamam, Alhadi;
Musti, Mohamad I. S.;
Hartomo, Susilo;
Aprilia, Shirley;
Tampubolon, Patuan P.;
Lestari, Dian

Publication type:

Article

Improving CRISPR guide design with consensus approaches.

Published in:

BMC Genomics, 2019, v. 20, n. 9, p. 1, doi. 10.1186/s12864-019-6291-z

By:

Bradford, Jacob;
Perrin, Dimitri

Publication type:

Article

GO2Vec: transforming GO terms and proteins to vector representations via graph embeddings.

Published in:

BMC Genomics, 2019, v. 20, n. 9, p. 1, doi. 10.1186/s12864-019-6272-2

By:

Zhong, Xiaoshi;
Kaalia, Rama;
Rajapakse, Jagath C.

Publication type:

Article

LePrimAlign: local entropy-based alignment of PPI networks to predict conserved modules.

Published in:

BMC Genomics, 2019, v. 20, n. 9, p. 1, doi. 10.1186/s12864-019-6271-3

By:

Maskey, Sawal;
Cho, Young-Rae

Publication type:

Article

Genomic dissection of the most prevalent Listeria monocytogenes clone, sequence type ST87, in China.

Published in:

BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6399-1

By:

Wang, Yan;
Luo, Lijuan;
Li, Qun;
Wang, Hong;
Wang, Yiqian;
Sun, Hui;
Xu, Jianguo;
Lan, Ruiting;
Ye, Changyun

Publication type:

Article

Pesticide application has little influence on coding and non-coding gene expressions in rice.

Published in:

BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6381-y

By:

Muhammad, Sajid;
Tan, Jingai;
Deng, Pingchuan;
Li, Tingting;
He, Haohua;
Bian, Jianmin;
Wu, Liang

Publication type:

Article

An improved catalogue of putative synaptic genes defined exclusively by temporal transcription profiles through an ensemble machine learning approach.

Published in:

BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6380-z

By:

Pazos Obregón, Flavio;
Palazzo, Martín;
Soto, Pablo;
Guerberoff, Gustavo;
Yankilevich, Patricio;
Cantera, Rafael

Publication type:

Article

Genomewide analysis of circular RNA in pituitaries of normal and heat-stressed sows.

Published in:

BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6377-7

By:

Zhang, Haojie;
Hu, Baoyu;
Xiong, Jiali;
Chen, Ting;
Xi, Qianyun;
Luo, Junyi;
Jiang, Qingyan;
Sun, Jiajie;
Zhang, Yongliang

Publication type:

Article

Hypothesis: protein and RNA attributes are continuously optimized over time.

Published in:

BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6371-0

By:

Cambridge, Sidney B.

Publication type:

Article

Parallel selection on ecologically relevant gene functions in the transcriptomes of highly diversifying salmonids.

Published in:

BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6361-2

By:

Schneider, Kevin;
Adams, Colin E.;
Elmer, Kathryn R.

Publication type:

Article

The transcriptome of the rumen ciliate Entodinium caudatum reveals some of its metabolic features.

Published in:

BMC Genomics, 2019, v. 20, p. 1, doi. 10.1186/s12864-019-6382-x

By:

Wang, Lingling;
Abu-Doleh, Anas;
Plank, Johanna;
Catalyurek, Umit V.;
Firkins, Jeffrey L.;
Yu, Zhongtang

Publication type:

Article

A novel graph theoretical approach for modeling microbiomes and inferring microbial ecological relationships.

Published in:

BMC Genomics, 2019, v. 20, n. 11, p. 1, doi. 10.1186/s12864-019-6288-7

By:

Kim, Suyeon;
Thapa, Ishwor;
Zhang, Ling;
Ali, Hesham

Publication type:

Article

Knowledge Base Commons (KBCommons) v1.1: a universal framework for multi-omics data integration and biological discoveries.

Published in:

BMC Genomics, 2019, v. 20, n. 11, p. 1, doi. 10.1186/s12864-019-6287-8

By:

Zeng, Shuai;
Lyu, Zhen;
Narisetti, Siva Ratna Kumari;
Xu, Dong;
Joshi, Trupti

Publication type:

Article

A hybrid and scalable error correction algorithm for indel and substitution errors of long reads.

Published in:

BMC Genomics, 2019, v. 20, n. 11, p. 1, doi. 10.1186/s12864-019-6286-9

By:

Das, Arghya Kusum;
Goswami, Sayan;
Lee, Kisung;
Park, Seung-Jong

Publication type:

Article

Integrate multi-omics data with biological interaction networks using Multi-view Factorization AutoEncoder (MAE).

Published in:

BMC Genomics, 2019, v. 20, n. 11, p. 1, doi. 10.1186/s12864-019-6285-x

By:

Ma, Tianle;
Zhang, Aidong

Publication type:

Article

LncRNA-miRNA interaction prediction through sequence-derived linear neighborhood propagation method with information combination.

Published in:

BMC Genomics, 2019, v. 20, n. 11, p. 1, doi. 10.1186/s12864-019-6284-y

By:

Zhang, Wen;
Tang, Guifeng;
Zhou, Shuang;
Niu, Yanqing

Publication type:

Article

StressGenePred: a twin prediction model architecture for classifying the stress types of samples and discovering stress-related genes in arabidopsis.

Published in:

BMC Genomics, 2019, v. 20, n. 11, p. 1, doi. 10.1186/s12864-019-6283-z

By:

Kang, Dongwon;
Ahn, Hongryul;
Lee, Sangseon;
Lee, Chai-Jin;
Hur, Jihye;
Jung, Woosuk;
Kim, Sun

Publication type:

Article

Host plant adaptation in the polyphagous whitefly, Trialeurodes vaporariorum, is associated with transcriptional plasticity and altered sensitivity to insecticides.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6397-3

By:

Pym, Adam;
Singh, Kumar Saurabh;
Nordgren, Åsa;
Davies, T. G. Emyr;
Zimmer, Christoph T.;
Elias, Jan;
Slater, Russell;
Bass, Chris

Publication type:

Article

Tissue-specific transposon-associated small RNAs in the gymnosperm tree, Norway spruce.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6385-7

By:

Nakamura, Miyuki;
Köhler, Claudia;
Hennig, Lars

Publication type:

Article

Combining transcriptomics and metabolomics to reveal the underlying molecular mechanism of ergosterol biosynthesis during the fruiting process of Flammulina velutipes.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6370-1

By:

Wang, Ruihong;
Ma, Pengda;
Li, Chen;
Xiao, Lingang;
Liang, Zongsuo;
Dong, Juane

Publication type:

Article

Protein expression profiles in Meishan and Duroc sows during mid-gestation reveal differences affecting uterine capacity, endometrial receptivity, and the maternal–fetal Interface.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6353-2

By:

Wang, Kejun;
Yang, Kaijie;
Xu, Qiao;
Liu, Yufang;
Li, Wenting;
Bai, Ying;
Wang, Jve;
Ding, Cui;
Liu, Ximing;
Tang, Qiguo;
Luo, Yabiao;
Zheng, Jie;
Wu, Keliang;
Fang, Meiying

Publication type:

Article

Comparative transcriptomic analysis of surf clams (Paphia undulate) infected with two strains of Vibrio spp. reveals the identity of key immune genes involved in host defense.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6351-4

By:

Yu, Mingjia;
Zheng, Lin;
Wang, Xiaobo;
Wu, Minfu;
Qi, Ming;
Fu, Wandong;
Zhang, Yang

Publication type:

Article

Molecular evolution and expression of opsin genes in Hydra vulgaris.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6349-y

By:

Macias-Muñoz, Aide;
Murad, Rabi;
Mortazavi, Ali

Publication type:

Article

NaCl-responsive ROS scavenging and energy supply in alkaligrass callus revealed from proteomic analysis.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6325-6

By:

Zhang, Yongxue;
Zhang, Yue;
Yu, Juanjuan;
Zhang, Heng;
Wang, Liyue;
Wang, Sining;
Guo, Siyi;
Miao, Yuchen;
Chen, Sixue;
Li, Ying;
Dai, Shaojun

Publication type:

Article

New insights into mammalian sex chromosome structure and evolution using high-quality sequences from bovine X and Y chromosomes.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6364-z

By:

Liu, Ruijie;
Low, Wai Yee;
Tearle, Rick;
Koren, Sergey;
Ghurye, Jay;
Rhie, Arang;
Phillippy, Adam M.;
Rosen, Benjamin D.;
Bickhart, Derek M.;
Smith, Timothy P. L.;
Hiendleder, Stefan;
Williams, John L.

Publication type:

Article

Transcriptome analysis reveals plasticity in gene regulation due to environmental cues in Primula sikkimensis, a high altitude plant species.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6354-1

By:

Gurung, Priya Darshini;
Upadhyay, Atul Kumar;
Bhardwaj, Pardeep Kumar;
Sowdhamini, Ramanathan;
Ramakrishnan, Uma

Publication type:

Article

Network analysis uncovers putative genes affecting resistance to tick infestation in Braford cattle skin.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6360-3

By:

Moré, Daniela D.;
Cardoso, Fernando F.;
Mudadu, Maurício A.;
Malagó-Jr, Wilson;
Gulias-Gomes, Claudia C.;
Sollero, Bruna P.;
Ibelli, Adriana M. G.;
Coutinho, Luiz L.;
Regitano, Luciana C. A.

Publication type:

Article

Genome-wide analysis and characterization of F-box gene family in Gossypium hirsutum L.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6280-2

By:

Zhang, Shulin;
Tian, Zailong;
Li, Haipeng;
Guo, Yutao;
Zhang, Yanqi;
Roberts, Jeremy A.;
Zhang, Xuebin;
Miao, Yuchen

Publication type:

Article

Complete genome sequences of Streptomyces spp. isolated from disease-suppressive soils.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6279-8

By:

Heinsch, Stephen C.;
Hsu, Szu-Yi;
Otto-Hanson, Lindsey;
Kinkel, Linda;
Smanski, Michael J.

Publication type:

Article

RNA-seq, de novo transcriptome assembly and flavonoid gene analysis in 13 wild and cultivated berry fruit species with high content of phenolics.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6183-2

By:

Thole, Vera;
Bassard, Jean-Etienne;
Ramírez-González, Ricardo;
Trick, Martin;
Ghasemi Afshar, Bijan;
Breitel, Dario;
Hill, Lionel;
Foito, Alexandre;
Shepherd, Louise;
Freitag, Sabine;
Nunes dos Santos, Cláudia;
Menezes, Regina;
Bañados, Pilar;
Naesby, Michael;
Wang, Liangsheng;
Sorokin, Artem;
Tikhonova, Olga;
Shelenga, Tatiana;
Stewart, Derek;
Vain, Philippe

Publication type:

Article

Genome-wide identification and expression profiling of glutathione transferase gene family under multiple stresses and hormone treatments in wheat (Triticum aestivum L.).

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6374-x

By:

Wang, Ruibin;
Ma, Jingfei;
Zhang, Qian;
Wu, Chunlai;
Zhao, Hongyan;
Wu, Yanan;
Yang, Guangxiao;
He, Guangyuan

Publication type:

Article

Transcriptome-wide association study identifies putative elicitors/suppressor of Puccinia graminis f. sp. tritici that modulate barley rpg4-mediated stem rust resistance.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6369-7

By:

Sharma Poudel, Roshan;
Richards, Jonathan;
Shrestha, Subidhya;
Solanki, Shyam;
Brueggeman, Robert

Publication type:

Article

Genetic deletion of Sphk2 confers protection against Pseudomonas aeruginosa mediated differential expression of genes related to virulent infection and inflammation in mouse lung.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6367-9

By:

Ebenezer, David L.;
Fu, Panfeng;
Krishnan, Yashaswin;
Maienschein-Cline, Mark;
Hu, Hong;
Jung, Segun;
Madduri, Ravi;
Arbieva, Zarema;
Harijith, Anantha;
Natarajan, Viswanathan

Publication type:

Article

A phenomics-based approach for the detection and interpretation of shared genetic influences on 29 biochemical indices in southern Chinese men.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6363-0

By:

Hu, Yanling;
Tan, Aihua;
Yu, Lei;
Hou, Chenyang;
Kuang, Haofa;
Wu, Qunying;
Su, Jinghan;
Zhou, Qingniao;
Zhu, Yuanyuan;
Zhang, Chenqi;
Wei, Wei;
Li, Lianfeng;
Li, Weidong;
Huang, Yuanjie;
Huang, Hongli;
Xie, Xing;
Lu, Tingxi;
Zhang, Haiying;
Yang, Xiaobo;
Gao, Yong

Publication type:

Article

Ectopic expression of Medicago truncatula homeodomain finger protein, MtPHD6, enhances drought tolerance in Arabidopsis.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6350-5

By:

Quan, Wenli;
Liu, Xun;
Wang, Lihua;
Yin, Mingzhu;
Yang, Li;
Chan, Zhulong

Publication type:

Article

Identification of genetic loci and candidate genes related to soybean flowering through genome wide association study.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6324-7

By:

Li, Minmin;
Liu, Ying;
Tao, Yahan;
Xu, Chongjing;
Li, Xin;
Zhang, Xiaoming;
Han, Yingpeng;
Yang, Xue;
Sun, Jingzhe;
Li, Wenbin;
Li, Dongmei;
Zhao, Xue;
Zhao, Lin

Publication type:

Article

ReVac: a reverse vaccinology computational pipeline for prioritization of prokaryotic protein vaccine candidates.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6195-y

By:

D'Mello, Adonis;
Ahearn, Christian P.;
Murphy, Timothy F.;
Tettelin, Hervé

Publication type:

Article

Convergent degeneration of olfactory receptor gene repertoires in marine mammals.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6290-0

By:

Ake Liu;
Funan He;
Libing Shen;
Ruixiang Liu;
Zhijun Wang;
Jingqi Zhou

Publication type:

Article

Transcriptome sequencing of Saccharina japonica sporophytes during whole developmental periods reveals regulatory networks underlying alginate and mannitol biosynthesis.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6366-x

By:

Shao, Zhanru;
Zhang, Pengyan;
Lu, Chang;
Li, Shaoxuan;
Chen, Zhihang;
Wang, Xiuliang;
Duan, Delin

Publication type:

Article