Works matching IS 14712164 AND DT 2014 AND VI 15

Results: 1300

A hyper-dynamic nature of bivalent promoter states underlies coordinated developmental gene expression modules.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 66, doi. 10.1186/1471-2164-15-1186

By:

Shah, Akshay;
Oldenburg, Anja;
Collas, Philippe

Publication type:

Article

Transcriptomic and proteomic dynamics in the metabolism of a diazotrophic cyanobacterium, Cyanothece sp. PCC 7822 during a diurnal light-dark cycle.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 32, doi. 10.1186/1471-2164-15-1185

By:

Welkie, David;
Xiaohui Zhang;
Markville, Meng Lye;
Taylor, Ronald;
Orr, Galya;
Jacobs, Jon;
Bhide, Ketaki;
Thimmapuram, Jyothi;
Gritsenko, Marina;
Mitchell, Hugh;
Smith, Richard;
Sherman, Louis A.

Publication type:

Article

Erratum: genomic comparison of 83 Bacillus phages reveals 12 clusters, 14 singletons and remarkable diversity.

Published in:

2014

By:

Grose, Julianne H.;
Jensen, Garrett L.;
Burnett, Sandra H.;
Breakwell, Donald P.

Publication type:

Correction Notice

Mathematical model of the Tat-Rev regulation of HIV-1 replication in an activated cell predicts the existence of oscillatory dynamics in the synthesis of viral components.

Published in:

BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-S12-S1

By:

Likhoshvai, Vitaly A.;
Khlebodarova, Tamara M.;
Bazhan, Sergei I.;
Gainova, Irina A.;
Chereshnev, Valery A.;
Bocharov, Gennady A.

Publication type:

Article

Analysis of signaling networks distributed over intracellular compartments based on protein-protein interactions.

Published in:

BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-S12-S7

By:

Popik, Olga Vasil'evna;
Saik, Olga Vladimirovna;
Petrovskiy, Evgeny Dmitrievich;
Sommer, Björn;
Hofestädt, Ralf;
Lavrik, Inna Nikolaevna;
Ivanisenko, Vladimir Aleksandrovich

Publication type:

Article

Shotgun proteomics reveals physiological response to ocean acidification in Crassostrea gigas

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 951, doi. 10.1186/1471-2164-15-951

By:

Timmins-Schiffman, Emma;
Coffey, William D;
Hua, Wilber;
Nunn, Brook L;
Dickinson, Gary H;
Roberts, Steven B

Publication type:

Article

Sequence-based model of gap gene regulatory network.

Published in:

BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-S12-S6

By:

Kozlov, Konstantin;
Gursky, Vitaly;
Kulakovskiy, Ivan;
Samsonova, Maria

Publication type:

Article

Computational analysis of auxin responsive elements in the Arabidopsis thaliana L. genome.

Published in:

BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-S12-S4

By:

Mironova, Victoria V.;
Omelyanchuk, Nadezda A.;
Wiebe, Daniil S.;
Levitsky, Victor G.

Publication type:

Article

Analysis of discordant Affymetrix probesets casts serious doubt on idea of microarray data reutilization.

Published in:

BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-S12-S8

By:

Marakhonov, Andrey;
Sadovskaya, Nataliya;
Antonov, Ivan;
Baranova, Ancha;
Skoblov, Mikhail

Publication type:

Article

Distance-based classifiers as potential diagnostic and prediction tools for human diseases.

Published in:

BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-S12-S10

By:

Veytsman, Boris;
Lei Wang;
Tiange Cui;
Bruskin, Sergey;
Baranova, Ancha

Publication type:

Article

Transcriptome profiling using pyrosequencing shows genes associated with bast fiber development in ramie (Boehmeria nivea L.)

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 919, doi. 10.1186/1471-2164-15-919

By:

Jie Chen;
Zhihua Pei;
Lunjin Dai;
Bo Wang;
Lijun Liu;
Xia An;
Dingxiang Peng

Publication type:

Article

Exhaustive data mining comparison of the effects of low doses of ionizing radiation, formaldehyde and dioxins.

Published in:

BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-S12-S5

By:

Moskalev, Alexey;
Shaposhnikov, Mikhail;
Plyusnina, Ekaterina;
Plyusnin, Sergey;
Shostal, Olga;
Aliper, Alexander;
Zhavoronkov, Alex

Publication type:

Article

Application of quantitative trait locus mapping and transcriptomics to studies of the senescence-accelerated phenotype in rats.

Published in:

BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-S12-S3

By:

Korbolina, Elena E.;
Ershov, Nikita I.;
Bryzgalov, Leonid O.;
Kolosova, Natalia G.

Publication type:

Article

Time-course human urine proteomics in space-flight simulation experiments.

Published in:

BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-S12-S2

By:

Binder, Hans;
Wirth, Henry;
Arakelyan, Arsen;
Lembcke, Kathrin;
Tiys, Evgeny S.;
Ivanisenko, Vladimir A.;
Kolchanov, Nikolay A.;
Kononikhin, Alexey;
Popov, Igor;
Nikolaev, Evgeny N.;
Pastushkova, Lyudmila Kh.;
Larina, Irina M.

Publication type:

Article

Molecular analysis of the benthos microbial community in Zavarzin thermal spring (Uzon Caldera, Kamchatka, Russia).

Published in:

BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-S12-S12

By:

Rozanov, Alexey S.;
Bryanskaya, Alla V.;
Malup, Tatiana K.;
Meshcheryakova, Irina A.;
Lazareva, Elena V.;
Taran, Oksana P.;
Ivanisenko, Timofey V.;
Ivanisenko, Vladimir A.;
Zhmodik, Sergey M.;
Kolchanov, Nikolay A.;
Peltek, Sergey E.

Publication type:

Article

Dynamics of miRNA driven feed-forward loop depends upon miRNA action mechanisms.

Published in:

BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-S12-S9

By:

Duk, Maria A.;
Samsonova, Maria G.;
Samsonov, Alexander M.

Publication type:

Article

Chromatin Interaction Analysis with Paired-End Tag (ChIA-PET) sequencing technology and application.

Published in:

BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-S12-S11

By:

Guoliang Li;
Liuyang Cai;
Huidan Chang;
Ping Hong;
Qiangwei Zhou;
Kulakova, Ekaterina V;
Kolchanov, Nikolay A;
Yijun Ruan

Publication type:

Article

Analysis of the basal chordate Botryllus schlosseri reveals a set of genes associated with fertility.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 3689, doi. 10.1186/1471-2164-15-1183

By:

Rodriguez, Delany;
Sanders, Erin N.;
Farell, Kelsea;
Langenbacher, Adam D.;
Taketa, Daryl A.;
Hopper, Michelle Rae;
Kennedy, Morgan;
Gracey, Andrew;
De Tomaso, Anthony W.

Publication type:

Article

CAGE-defined promoter regions of the genes implicated in Rett Syndrome.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 3494, doi. 10.1186/1471-2164-15-1177

By:

Vitezic, Morana;
Bertin, Nicolas;
Andersson, Robin;
Lipovich, Leonard;
Kawaji, Hideya;
Lassmann, Timo;
Sandelin, Albin;
Heutink, Peter;
Goldowitz, Dan;
Ha, Thomas;
Peter Zhang;
Patrizi, Annarita;
Fagiolini, Michela;
Forrest, Alistair R. R.;
Carninci, Piero;
Saxena, Alka

Publication type:

Article

Reproducibility enhancement and differential expression of non predefined functional gene sets in human genome.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 3629, doi. 10.1186/1471-2164-15-1181

By:

da Silva, Samoel R. M.;
Perrone, Gabriel C.;
Dinis, João;
de Almeida, Rita M. C.

Publication type:

Article

The translation initiation complex eIF3 in trypanosomatids and other pathogenic excavates - identification of conserved and divergent features based on orthologue analysis.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 3423, doi. 10.1186/1471-2164-15-1175

By:

Rezende, Antonio M.;
Assis, Ludmila A.;
Nunes, Eduardo C.;
da Costa Lima, Tamara D.;
Marchini, Fabricio K.;
Freire, Eden R.;
Reis, Christian R. S.;
de Melo Neto, Osvaldo P.

Publication type:

Article

TREC-IN: gene knock-in genetic tool for genomes cloned in yeast.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 3606, doi. 10.1186/1471-2164-15-1180

By:

Chandran, Suchismita;
Noskov, Vladimir N.;
Segall-Shapiro, Thomas H.;
Li Ma;
Whiteis, Caitlin;
Lartigue, Carole;
Jores, Joerg;
Vashee, Sanjay;
Ray-Yuan Chuang

Publication type:

Article

Systematic exploration of autonomous modules in noisy microRNA-target networks for testing the generality of the ceRNA hypothesis.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 3529, doi. 10.1186/1471-2164-15-1178

By:

Danny Kit-Sang Yip;
Pang, Iris K.;
Yip, Kevin Y.

Publication type:

Article

Functional mechanisms of drought tolerance in subtropical maize (Zea mays L.) identified using genome-wide association mapping.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 3661, doi. 10.1186/1471-2164-15-1182

By:

Thirunavukkarasu, Nepolean;
Hossain, Firoz;
Arora, Kanika;
Sharma, Rinku;
Shiriga, Kaliyugam;
Mittal, Swati;
Mohan, Sweta;
Namratha, Pottekatt Mohanlal;
Dogga, Sreelatha;
Rani, Tikka Shobha;
Katragadda, Sumalini;
Rathore, Abhishek;
Shah, Trushar;
Mohapatra, Trilochan;
Gupta, Hari Shankar

Publication type:

Article

Distinct gene signatures in aortic tissue from ApoE<sup>-/-</sup> mice exposed to pathogens or Western diet.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 3459, doi. 10.1186/1471-2164-15-1176

By:

Kramer, Carolyn D.;
Weinberg, Ellen O.;
Gower, Adam C.;
Xianbao He;
Mekasha, Samrawit;
Slocum, Connie;
Beaulieu, Lea M.;
Wetzler, Lee;
Alekseyev, Yuriy;
Gibson III, Frank C.;
Freedman, Jane E.;
Ingalls, Robin R.;
Genco, Caroline A.

Publication type:

Article

Quantification of epigenetic biomarkers: an evaluation of established and emerging methods for DNA methylation analysis.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 3394, doi. 10.1186/1471-2164-15-1174

By:

Redshaw, Nicholas;
Huggett, Jim F.;
Taylor, Martin S.;
Foy, Carole A.;
Devonshire, Alison S.

Publication type:

Article

The use of genome wide association methods to investigate pathogenicity, population structure and serovar in Haemophilus parasuis.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 3567, doi. 10.1186/1471-2164-15-1179

By:

Howell, Kate J.;
Weinert, Lucy A.;
Chaudhuri, Roy R.;
Shi-Lu Luan;
Peters, Sarah E.;
Corander, Jukka;
Harris, David;
Angen, Øystein;
Aragon, Virginia;
Bensaid, Albert;
Williamson, Susanna M.;
Parkhill, Julian;
Langford, Paul R.;
Rycroft, Andrew N.;
Wren, Brendan W.;
Holden, Matthew T. G.;
Tucker, Alexander W.;
Maskell, Duncan J.

Publication type:

Article

Changes in activity of metabolic and regulatory pathways during germination of S. coelicolor.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 3367, doi. 10.1186/1471-2164-15-1173

By:

Bobek, Jan;
Strakova, Eva;
Zikova, Alice;
Vohradsky, Jiri

Publication type:

Article

Are special read alignment strategies necessary and cost-effective when handling sequencing reads from patient-derived tumor xenografts?

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 3340, doi. 10.1186/1471-2164-15-1172

By:

Kai-Yuen Tso;
Sau Dan Lee;
Kwok-Wai Lo;
Yip, Kevin Y.

Publication type:

Article

Genomic prediction of genetic merit using LD-based haplotypes in the Nordic Holstein population.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 3320, doi. 10.1186/1471-2164-15-1171

By:

Cuyabano, Beatriz C. D.;
Guosheng Su;
Lund, Mogens S.

Publication type:

Article

Sub-genomic selection patterns as a signature of breeding in the allopolyploid Brassica napus genome.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 3285, doi. 10.1186/1471-2164-15-1170

By:

Lunwen Qian;
Wei Qian;
Snowdon, Rod J.

Publication type:

Article

Susceptibility loci revealed for bovine respiratory disease complex in pre-weaned holstein calves.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 3086, doi. 10.1186/1471-2164-15-1164

By:

Neibergs, Holly L.;
Seabury, Christopher M.;
Wojtowicz, Andrzej J.;
Zeping Wang;
Scraggs, Erik;
Kiser, Jennifer;
Neupane, Mahesh;
Womack, James E.;
Van Eenennaam, Alison;
Hagevoort, G. Robert;
Lehenbauer, Terry W.;
Aly, Sharif;
Davis, Jessica;
Taylor, Jeremy F.

Publication type:

Article

NextGen sequencing reveals short double crossovers contribute disproportionately to genetic diversity in Toxoplasma gondii.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 3231, doi. 10.1186/1471-2164-15-1168

By:

Khan, Asis;
Shaik, Jahangheer S.;
Behnke, Michael;
Qiuling Wang;
Dubey, J. P.;
Lorenzi, Hernan A.;
Ajioka, James W.;
Rosenthal, Benjamin M.;
Sibley, L. David

Publication type:

Article

Proteome changes underpin improved meat quality and yield of chickens (Gallus gallus) fed the probiotic Enterococcus faecium.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 3198, doi. 10.1186/1471-2164-15-1167

By:

Aijuan Zheng;
Jianjie Luo;
Kun Meng;
Jianke Li;
Shu Zhang;
Ke Li;
Guohua Liu;
Huiyi Cai;
Bryden, Wayne L.;
Bin Yao

Publication type:

Article

Fine mapping of Rcr1 and analyses of its effect on transcriptome patterns during infection by Plasmodiophora brassicae.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 3160, doi. 10.1186/1471-2164-15-1166

By:

Mingguang Chu;
Tao Song;
Falk, Kevin C.;
Xingguo Zhang;
Xunjia Liu;
Adrian Chang;
Lahlali, Rachid;
McGregor, Linda;
Gossen, Bruce D.;
Fengqun Yu;
Gary Peng

Publication type:

Article

The ecological genomic basis of salinity adaptation in Tunisian Medicago truncatula.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 955, doi. 10.1186/1471-2164-15-1160

By:

Friesen, Maren L.;
von Wettberg, Eric J. B.;
Badri, Mounawer;
Moriuchi, Ken S.;
Barhoumi, Fathi;
Chang, Peter L.;
Cuellar-Ortiz, Sonia;
Cordeiro, Matilde A.;
Vu, Wendy T.;
Arraouadi, Soumaya;
Djébali, Naceur;
Zribi, Kais;
Badri, Yazid;
Porter, Stephanie S.;
Aouani, Mohammed Elarbi;
Cook, Douglas R.;
Strauss, Sharon Y.;
Nuzhdin, Sergey V.

Publication type:

Article

Integrative analysis of high-throughput RNAi screen data identifies the FER and CRKL tyrosine kinases as new regulators of the mitogenic ERK-dependent pathways in transformed cells.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 3260, doi. 10.1186/1471-2164-15-1169

By:

Nizard, Philippe;
Ezan, Frédéric;
Bonnier, Dominique;
Le Meur, Nolwenn;
Langouët, Sophie;
Baffet, Georges;
Arlot-Bonnemains, Yannick;
Théret, Nathalie

Publication type:

Article

Comparative genomic analysis of Acinetobacter baumannii clinical isolates reveals extensive genomic variation and diverse antibiotic resistance determinants.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 3058, doi. 10.1186/1471-2164-15-1163

By:

Fei Liu;
Yuying Zhu;
Yong Yi;
Na Lu;
Baoli Zhu;
Yongfei Hu

Publication type:

Article

Simultaneous analysis of large-scale RNAi screens for pathogen entry.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 3021, doi. 10.1186/1471-2164-15-1162

By:

Rämö, Pauli;
Drewek, Anna;
Arrieumerlou, Cécile;
Beerenwinkel, Niko;
Ben-Tekaya, Houchaima;
Cardel, Bettina;
Casanova, Alain;
Conde-Alvarez, Raquel;
Cossart, Pascale;
Csúcs, Gábor;
Eicher, Simone;
Emmenlauer, Mario;
Greber, Urs;
Hardt, Wolf-Dietrich;
Helenius, Ari;
Kasper, Christoph;
Kaufmann, Andreas;
Kreibich, Saskia;
Kühbacher, Andreas;
Kunszt, Peter

Publication type:

Article

Cytokine systems approach demonstrates differences in innate and pro-inflammatory host responses between genetically distinct MERS-CoV isolates.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 993, doi. 10.1186/1471-2164-15-1161

By:

Selinger, Christian;
Tisoncik-Go, Jennifer;
Menachery, Vineet D.;
Agnihothram, Sudhakar;
Law, G. Lynn;
Jean Chang;
Kelly, Sara M.;
Sova, Pavel;
Baric, Ralph S.;
Katze, Michael G.

Publication type:

Article

Proteomics of muscle chronological ageing in post-menopausal women.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 3123, doi. 10.1186/1471-2164-15-1165

By:

Gueugneau, Marine;
Coudy-Gandilhon, Cécile;
Gourbeyre, Ophélie;
Chambon, Christophe;
Combaret, Lydie;
Polge, Cécile;
Taillandier, Daniel;
Attaix, Didier;
Friguet, Bertrand;
Maier, Andrea B.;
Butler-Browne, Gillian;
Béchet, Daniel

Publication type:

Article

Sequence search and analysis of gene products containing RNA recognition motifs in the human genome.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 928, doi. 10.1186/1471-2164-15-1159

By:

Malhotra, Sony;
Sowdhamini, Ramanathan

Publication type:

Article

An SNP-based saturated genetic map and QTL analysis of fruit-related traits in cucumber using specific-length amplified fragment (SLAF) sequencing.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 904, doi. 10.1186/1471-2164-15-1158

By:

Qingzhen Wei;
Yunzhu Wang;
Xiaodong Qin;
Yunxia Zhang;
Zhentao Zhang;
Jing Wang;
Ji Li;
Qunfeng Lou

Publication type:

Article

Complex coding of endogenous siRNA, transcriptional silencing and H3K9 methylation on native targets of germline nuclear RNAi in C. elegans.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 876, doi. 10.1186/1471-2164-15-1157

By:

Zhouli Ni, Julie;
Chen, Esteban;
Guoping Gu, Sam

Publication type:

Article

The compact mitochondrial genome of Zorotypus medoensis provides insights into phylogenetic position of Zoraptera.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 848, doi. 10.1186/1471-2164-15-1156

By:

Chuan Ma;
Yeying Wang;
Chao Wu;
Le Kang;
Chunxiang Liu

Publication type:

Article

Bovine serum albumin in saliva mediates grazing response in Leymus chinensis revealed by RNA sequencing.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 1987, doi. 10.1186/1471-2164-15-1126

By:

Xin Huang;
Xianjun Peng;
Lexin Zhang;
Shuangyan Chen;
Liqin Cheng;
Gongshe Liu

Publication type:

Article

The draft genome of the pest tephritid fruit fly Bactrocera tryoni: resources for the genomic analysis of hybridising species.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 738, doi. 10.1186/1471-2164-15-1153

By:

Gilchrist, Anthony Stuart;
Shearman, Deborah C. A.;
Frommer, Marianne;
Raphael, Kathryn A.;
Deshpande, Nandan P.;
Wilkins, Marc R.;
Sherwin, William B.;
Sved, John A.

Publication type:

Article

Co-acting gene networks predict TRAIL responsiveness of tumour cells with high accuracy.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 504, doi. 10.1186/1471-2164-15-1144

By:

O'Reilly, Paul;
Ortutay, Csaba;
Gernon, Grainne;
O'Connell, Enda;
Seoighe, Cathal;
Boyce, Susan;
Serrano, Luis;
Szegezdi, Eva

Publication type:

Article

Exome sequencing and genome-wide copy number variant mapping reveal novel associations with sensorineural hereditary hearing loss.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 816, doi. 10.1186/1471-2164-15-1155

By:

Haraksingh, Rajini R.;
Jahanbani, Fereshteh;
Rodriguez-Paris, Juan;
Gelernter, Joel;
Nadeau, Kari C.;
Oghalai, John S.;
Schrijver, Iris;
Snyder, Michael P.

Publication type:

Article

Automated genomic context analysis and experimental validation platform for discovery of prokaryote transcriptional regulator functions.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 453, doi. 10.1186/1471-2164-15-1142

By:

Martí-Arbona, Ricardo;
Fangping Mu;
Nowak-Lovato, Kristy L.;
Wren, Melinda S.;
Unkefer, Clifford J.;
Unkefer, Pat J.

Publication type:

Article