Works matching IS 14712164 AND DT 2013 AND VI 14

Results: 996

Molecular pathway identification using biological network-regularized logistic models.

Published in:

BMC Genomics, 2013, v. 14, p. 1, doi. 10.1186/1471-2164-14-S8-S7

By:

Wen Zhang;
Ying-wooi Wan;
Allen, Genevera I.;
Kaifang Pang;
Anderson, Matthew L.;
Zhandong Liu

Publication type:

Article

Post genome-wide association studies functional characterization of prostate cancer risk loci.

Published in:

BMC Genomics, 2013, v. 14, p. 1, doi. 10.1186/1471-2164-14-S8-S9

By:

Junfeng Jiang;
Weirong Cui;
Wanwipa Vongsangnak;
Guang Hu;
Bairong Shen

Publication type:

Article

The de novo sequence origin of two long non-coding genes from an inter-genic region.

Published in:

BMC Genomics, 2013, v. 14, p. 1, doi. 10.1186/1471-2164-14-S8-S6

By:

Yulin Dai;
Shengdi Li;
Xiao Dong;
Han Sun;
Chao Li;
Zhi Liu;
Beili Ying;
Guohui Ding;
Yixue Li

Publication type:

Article

Identification of gene fusions from human lung cancer mass spectrometry data.

Published in:

BMC Genomics, 2013, v. 14, p. 1, doi. 10.1186/1471-2164-14-S8-S5

By:

Han Sun;
Xiaobin Xing;
Jing Li;
Fengli Zhou;
Yunqin Chen;
Ying He;
Wei Li;
Guangwu Wei;
Xiao Chang;
Jia Jia;
Yixue Li;
Lu Xie

Publication type:

Article

Evaluation of read count based RNAseq analysis methods.

Published in:

BMC Genomics, 2013, v. 14, p. 1, doi. 10.1186/1471-2164-14-S8-S2

By:

Yan Guo;
Chung-I Li;
Fei Ye;
Yu Shyr

Publication type:

Article

Mechanistic insights into mode of action of novel natural cathepsin L inhibitors.

Published in:

BMC Genomics, 2013, v. 14, p. 1, doi. 10.1186/1471-2164-14-S8-S10

By:

Tyagi, Chetna;
Grover, Sonam;
Dhanjal, Jaspreet Kaur;
Goyal, Sukriti;
Goyal, Manisha;
Grover, Abhinav

Publication type:

Article

Simultaneous inferences based on empirical Bayes methods and false discovery rates ineQTL data analysis.

Published in:

BMC Genomics, 2013, v. 14, p. 1, doi. 10.1186/1471-2164-14-S8-S8

By:

Chakraborty, Arindom;
Guanglong Jiang;
Boustani, Malaz;
Yunlong Liu;
Todd Skaar;
Lang Li

Publication type:

Article

MetaID: A novel method for identification and quantification of metagenomic samples.

Published in:

BMC Genomics, 2013, v. 14, p. 1, doi. 10.1186/1471-2164-14-S8-S4

By:

Srinivasan, Satish M.;
Guda, Chittibabu

Publication type:

Article

QChIPat: a quantitative method to identify distinct binding patterns for two biological ChIP-seq samples in different experimental conditions.

Published in:

BMC Genomics, 2013, v. 14, p. 1, doi. 10.1186/1471-2164-14-S8-S3

By:

Bin Liu;
Jimmy Yi;
Aishwarya, S. V.;
Xun Lan;
Yilin Ma;
Huang, Tim H. M.;
Leone, Gustavo;
Jin, Victor X.

Publication type:

Article

Interdisciplinary dialogue for education, collaboration, and innovation: Intelligent Biology and Medicine in and beyond 2013.

Published in:

2013

By:

Bing Zhang;
Yufei Huang;
McDermott, Jason E.;
Posey, Rebecca H.;
Hua Xu;
Zhongming Zhao

Publication type:

Proceeding

Genetic dissection of blood lipid traits by integrating genome-wide association study and gene expression profiling in a porcine model.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-848

By:

Congying Chen;
Bin Yang;
Zhijun Zeng;
Hui Yang;
Chenlong Liu;
Jun Ren;
Lusheng Huang

Publication type:

Article

Transcriptome analysis of the filamentous fungus Aspergillus nidulans directed to the global identification of promoters.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-847

By:

Sibthorp, Christopher;
Huihai Wu;
Cowley, Gwendolyn;
Wong, Prudence W.;
Palaima, Paulius;
Morozov, Igor Y.;
Weedall, Gareth D.;
Caddick, Mark X.

Publication type:

Article

Complex gene expression in the dragline silk producing glands of the Western black widow (Latrodectus hesperus).

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-846

By:

Lane, Amanda Kelly;
Hayashi, Cheryl Y.;
Whitworth, Gregg B.;
Ayoub, Nadia A.

Publication type:

Article

Genome-wide analysis of porcine backfat and intramuscular fat fatty acid composition using highdensity genotyping and expression data.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-845

By:

Muñoz, María;
Rodríguez, M. Carmen;
Alves, Estefania;
Folch, Josep María;
Ibañez-Escriche, Noelia;
Silió, Luis;
Fernández, Ana Isabel

Publication type:

Article

Translational profiling in childhood acute lymphoblastic leukemia: no evidence for glucocorticoid regulation of mRNA translation.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-844

By:

Aneichyk, Tatsiana;
Bindreither, Daniel;
Mantinger, Christine;
Grazio, Daniela;
Goetsch, Katrin;
Kofler, Reinhard;
Rainer, Johannes

Publication type:

Article

Analysis of porcine adipose tissue transcriptome reveals differences in de novo fatty acid synthesis in pigs with divergent muscle fatty acid composition.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-843

By:

Corominas, Jordi;
Ramayo-Caldas, Yuliaxis;
Puig-Oliveras, Anna;
Estellé, Jordi;
Castelló, Anna;
Alves, Estefania;
Pena, Ramona N.;
Ballester, Maria;
Folch, Josep M.

Publication type:

Article

Morphogenesis-regulated localization of protein kinase A to genomic sites in Candida albicans.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-842

By:

Schaekel, Alida;
Desai, Prashant R.;
Ernst, Joachim F.

Publication type:

Article

Comparative transcriptome analysis of tomato (Solanum lycopersicum) in response to exogenous abscisic acid.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-841

By:

Yan Wang;
Xiang Tao;
Xiao-Mei Tang;
Liang Xiao;
Jiao-long Sun;
Xue-Feng Yan;
Dan Li;
Hong-Yuan Deng;
Xin-Rong Ma

Publication type:

Article

Genome-wide analysis of coordinated transcript abundance during seed development in different Brassica rapa morphotypes.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-840

By:

Basnet, Ram Kumar;
Moreno-Pachon, Natalia;
Ke Lin;
Bucher, Johan;
Visser, Richard G.;
Maliepaard, Chris;
Bonnema, Guusje

Publication type:

Article

Phylogenetic and transcriptional analysis of an expanded bZIP transcription factor family in Phytophthora sojae.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-839

By:

Wenwu Ye;
Yang Wang;
Suomeng Dong;
Tyler, Brett M.;
Yuanchao Wang

Publication type:

Article

Genome-wide identification of genes involved in the positive and negative regulation of acetic acid-induced programmed cell death in Saccharomyces cerevisiae.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-838

By:

Sousa, Marlene;
Duarte, Ana Marta;
Fernandes, Tânia R.;
Chaves, Susana R.;
Pacheco, Andreia;
Leão, Cecília;
Côrte-Real, Manuela;
Sousa, Maria João

Publication type:

Article

Genome sequence and analysis of methylotrophic yeast Hansenula polymorpha DL1.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-837

By:

Ravin, Nikolai V.;
Eldarov, Michael A.;
Kadnikov, Vitaly V.;
Beletsky, Alexey V.;
Schneider, Jessica;
Mardanova, Eugenia S.;
Smekalova, Elena M.;
Zvereva, Maria I.;
Dontsova, Olga A.;
Mardanov, Andrey V.;
Skryabin, Konstantin G.

Publication type:

Article

De novo transcriptome sequencing of radish (Raphanus sativus L.) and analysis of major genes involved in glucosinolate metabolism.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-836

By:

Yan Wang;
Yan Pan;
Zhe Liu;
Xianwen Zhu;
Lulu Zhai;
Liang Xu;
Rugang Yu;
Yiqin Gong;
Liwang Liu

Publication type:

Article

SNP genotyping reveals genetic diversity between cultivated landraces and contemporary varieties of tomato.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 2, doi. 10.1186/1471-2164-14-835

By:

Corrado, Giandomenico;
Piffanelli, Pietro;
Caramante, Martina;
Coppola, Mariangela;
Rao, Rosa

Publication type:

Article

Characterising ChIP-seq binding patterns by modelbased peak shape deconvolution.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-834

By:

Mendoza-Parra, Marco-Antonio;
Nowicka, Malgorzata;
Gool, Wouter Van;
Gronemeyer, Hinrich

Publication type:

Article

A transcriptomic approach to elucidate the physiological significance of human cytochrome P450 2S1 in bronchial epithelial cells.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-833

By:

Madanayake, Thushara W.;
Lindquist, Ingrid E.;
Devitt, Nicholas P.;
Mudge, Joann;
Rowland, Aaron M.

Publication type:

Article

Iterative Feature Removal Yields Highly Discriminative Pathways.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-832

By:

O'Hara, Stephen;
Kun Wang;
Slayden, Richard A.;
Schenkel, Alan R.;
Huber, Greg;
O'Hern, Corey S.;
Shattuck, Mark D.;
Kirby, Michael

Publication type:

Article

Clustering of transcriptional profiles identifies changes to insulin signaling as an early event in a mouse model of Alzheimer's disease.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-831

By:

Jackson, Harriet M.;
Soto, Ileana;
Graham, Leah C.;
Carter, Gregory W.;
Howell, Gareth R.

Publication type:

Article

HOXC9 directly regulates distinct sets of genes to coordinate diverse cellular processes during neuronal differentiation.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-830

By:

Xiangwei Wang;
Jeong-Hyeon Choi;
Jane Ding;
Liqun Yang;
Ngoka, Lambert C.;
Lee, Eun J.;
Yunhong Zha;
Ling Mao;
Bilian Jin;
Mingqiang Ren;
Cowell, John;
Shuang Huang;
Huidong Shi;
Hongjuan Cui;
Han-Fei Ding

Publication type:

Article

Draft genome sequence of Xanthomonas fragariae reveals reductive evolution and distinct virulencerelated gene content.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-829

By:

Vandroemme, Joachim;
Cottyn, Bart;
Baeyen, Steve;
De Vos, Paul;
Maes, Martine

Publication type:

Article

The genome-wide binding profile of the Sulfolobus solfataricus transcription factor Ss-LrpB shows binding events beyond direct transcription regulation.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-828

By:

Nguyen-Duc, Trong;
van Oeffelen, Liesbeth;
Song, Ningning;
Hassanzadeh-Ghassabeh, Gholamreza;
Muyldermans, Serge;
Charlier, Daniel;
Peeters, Eveline

Publication type:

Article

De novo characterization of the Anthurium transcriptome and analysis of its digital gene expression under cold stress.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-827

By:

Dan-Qing Tian;
Xiao-Yun Pan;
Yong-Ming Yu;
Wei-Yong Wang;
Fei Zhang;
Ya-Ying Ge;
Xiao-Lan Shen;
Fu-Quan Shen;
Xiao-Jing Liu

Publication type:

Article

MMDiff: quantitative testing for shape changes in ChIP-Seq data sets.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-826

By:

Schweikert, Gabriele;
Cseke, Botond;
Clouaire, Thomas;
Bird, Adrian;
Sanguinetti, Guido

Publication type:

Article

Genome-wide transcriptional analysis of T cell activation reveals differential gene expression associated with psoriasis.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-825

By:

Palau, Nuria;
Julià, Antonio;
Ferrándiz, Carlos;
Puig, Lluís;
Fonseca, Eduardo;
Fernández, Emilia;
López-Lasanta, María;
Tortosa, Raül;
Marsal, Sara

Publication type:

Article

The chromatin modification by SUMO-2/3 but not SUMO-1 prevents the epigenetic activation of key immune-related genes during Kaposi's sarcoma associated herpesvirus reactivation.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-824

By:

Pei-Ching Chang;
Chia-Yang Cheng;
Mel Campbell;
Yi-Cheng Yang;
Hung-Wei Hsu;
Ting-Yu Chang;
Chia-Han Chu;
Yi-Wei Lee;
Chiu-Lien Hung;
Shi-Mei Lai;
Tepper, Clifford G.;
Wen-Ping Hsieh;
Hsei-Wei Wang;
Chuan-Yi Tang;
Wen-Ching Wang;
Hsing-Jien Kung

Publication type:

Article

Transcriptome profiling of fruit development and maturation in Chinese white pear (Pyrus bretschneideri Rehd).

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-823

By:

Min Xie;
Ying Huang;
Yanping Zhang;
Xin Wang;
Hua Yang;
Oliver Yu;
Wenhao Dai;
Congbing Fang

Publication type:

Article

RNA-seq reveals the RNA binding proteins, Hfq and RsmA, play various roles in virulence, antibiotic production and genomic flux in Serratia sp. ATCC 39006.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-822

By:

Wilf, Nabil M.;
Reid, Adam J.;
Ramsay, Joshua P.;
Williamson, Neil R.;
Croucher, Nicholas J.;
Gatto, Laurent;
Hester, Svenja S.;
Goulding, David;
Barquist, Lars;
Lilley, Kathryn S.;
Kingsley, Robert A.;
Dougan, Gordon;
Salmond, George P. C.

Publication type:

Article

Different stress responsive strategies to drought and heat in two durum wheat cultivars with contrasting water use efficiency.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-821

By:

Aprile, Alessio;
Havlickova, Lenka;
Panna, Riccardo;
Marè, Caterina;
Borrelli, Grazia M.;
Marone, Daniela;
Perrotta, Carla;
Rampino, Patrizia;
Bellis, Luigi De;
Curn, Vladislav;
Mastrangelo, Anna M.;
Rizza, Fulvia;
Cattivelli, Luigi

Publication type:

Article

Soil bacterial communities shaped by geochemical factors and land use in a less-explored area, Tibetan Plateau.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-820

By:

Xiangyu Guan;
Jinfeng Wang;
Hui Zhao;
Jianjun Wang;
Ximing Luo;
Fei Liu;
Fangqing Zhao

Publication type:

Article

Efficient generation of recombinant RNA viruses using targeted recombination-mediated mutagenesis of bacterial artificial chromosomes containing full-length cDNA.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-819

By:

Rasmussen, Thomas Bruun;
Risager, Peter Christian;
Fahnøe, Ulrik;
Friis, Martin Barfred;
Belsham, Graham J.;
Höper, Dirk;
Reimann, Ilona;
Beer, Martin

Publication type:

Article

Exploration of the gene fusion landscape of glioblastoma using transcriptome sequencing and copy number data.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-818

By:

Shah, Nameeta;
Lankerovich, Michael;
Hwahyung Lee;
Jae-Geun Yoon;
Schroeder, Brett;
Foltz, Greg

Publication type:

Article

Transcriptional responses to temperature and low oxygen stress in Atlantic salmon studied with next-generation sequencing technology.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-817

By:

Olsvik, Pål A.;
Vikeså, Vibeke;
Lie, Kai K.;
Hevrøy, Ernst M.

Publication type:

Article

Prioritizing genes responsible for host resistance to influenza using network approaches.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-816

By:

Bao, Suying;
Xueya Zhou;
Liangcai Zhang;
Jie Zhou;
Kelvin Kai-Wang To;
Binbin Wang;
Liqiu Wang;
Xuegong Zhang;
You-Qiang Song

Publication type:

Article

Genome wide gene-expression analysis of facultative reproductive diapause in the two-spotted spider mite Tetranychus urticae.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-815

By:

Bryon, Astrid;
Wybouw, Nicky;
Dermauw, Wannes;
Tirry, Luc;
Van Leeuwen, Thomas

Publication type:

Article

A tandem array of CBF/DREB1 genes is located in a major freezing tolerance QTL region on Medicago truncatula chromosome 6.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-814

By:

Tayeh, Nadim;
Bahrman, Nasser;
Sellier, Hélène;
Bluteau, Aurélie;
Blassiau, Christelle;
Joëlle Fourment, Joëlle Fourment;
Bellec, Arnaud;
Debellé, Frédéric;
Lejeune-Hénaut, Isabelle;
Delbreil, Bruno

Publication type:

Article

Clustered regulatory elements at nucleosome-depleted regions punctuate a constant nucleosomal landscape in Schizosaccharomyces pombe.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-813

By:

Soriano, Ignacio;
Quintales, Luis;
Antequera, Francisco

Publication type:

Article

Expression-based segmentation of the Drosophila genome.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-812

By:

Rubin, Alan F.;
Green, Phil

Publication type:

Article

A high-density SNP genetic linkage map for the silver-lipped pearl oyster, Pinctada maxima: a valuable resource for gene localisation and marker-assisted selection.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-810

By:

Jones, David B.;
Jerry, Dean R.;
Khatkar, Mehar S.;
Raadsma, Herman W.;
Zenger, Kyall R.

Publication type:

Article

Accession-specific modifiers act with ZWILLE/ARGONAUTE10 to maintain shoot meristem stem cells during embryogenesis in Arabidopsis.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-809

By:

Tucker, Matthew R.;
Roodbarkelari, Farshad;
Truernit, Elisabeth;
Adamski, Nikolai M.;
Hinze, Annika;
Lohmüller, Barbara;
Würschum, Tobias;
Laux, Thomas

Publication type:

Article

Growth rate-coordinated transcriptome reorganization in bacteria.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-808

By:

Yuki Matsumoto;
Yoshie Murakami;
Saburo Tsuru;
Bei-Wen Ying;
Tetsuya Yomo

Publication type:

Article