Works matching IS 14712164 AND DT 2010 AND VI 11 AND IP 1

Results: 149

Combining modularity, conservation, and interactions of proteins significantly increases precision and coverage of protein function prediction.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-717

By:

Jaeger, Samira;
Sers, Christine T;
Leser, Ulf

Publication type:

Article

miRNeye: a microRNA expression atlas of the mouse eye.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-715

By:

Karali, Marianthi;
Peluso, Ivana;
Gennarino, Vincenzo A;
Bilio, Marchesa;
Verde, Roberta;
Lago, Giampiero;
Dollé, Pascal;
Banfi, Sandro

Publication type:

Article

Specific patterns of gene space organisation revealed in wheat by using the combination of barley and wheat genomic resources.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-714

By:

Rustenholz, Camille;
Hedley, Pete E;
Morris, Jenny;
Choulet, Frédéric;
Feuillet, Catherine;
Waugh, Robbie;
Paux, Etienne

Publication type:

Article

Genetic and genomic analysis of hyperlipidemia, obesity and diabetes using (C57BL/6J × TALLYHO/JngJ) F2 mice.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-713

By:

Stewart, Taryn P;
Kim, Hyoung Yon;
Saxton, Arnold M;
Kim, Jung Han

Publication type:

Article

A response to Rome: lessons from pre- and post-publication data-sharing in the C. elegans research community.

Published in:

2010

By:

Voell, Matthew R;
Farris, Lily;
Levy, Edwin;
Marden, Emily

Publication type:

Letter

Transcriptome analysis of grain-filling caryopses reveals involvement of multiple regulatory pathways in chalky grain formation in rice.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-730

By:

Liu, Xiaolu;
Guo, Tao;
Wan, Xiangyuan;
Wang, Haiyang;
Zhu, Mingzhu;
Li, Aili;
Su, Ning;
Shen, Yingyue;
Mao, Bigang;
Zhai, Huqu;
Mao, Long;
Wan, Jianmin

Publication type:

Article

The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-728

By:

Trost, Eva;
Ott, Lisa;
Schneider, Jessica;
Schröder, Jasmin;
Jaenicke, Sebastian;
Goesmann, Alexander;
Husemann, Peter;
Stoye, Jens;
Dorella, Fernanda Alves;
Rocha, Flavia Souza;
de Castro Soares, Siomar;
D'Afonseca, Vívian;
Miyoshi, Anderson;
Ruiz, Jeronimo;
Silva, Artur;
Azevedo, Vasco;
Burkovski, Andreas;
Guiso, Nicole;
Join-Lambert, Olivier F;
Kayal, Samer

Publication type:

Article

Population- and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.).

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-727

By:

Chao, Shiaoman;
Dubcovsky, Jorge;
Dvorak, Jan;
Luo, Ming-Cheng;
Baenziger, Stephen P;
Matnyazov, Rustam;
Clark, Dale R;
Talbert, Luther E;
Anderson, James A;
Dreisigacker, Susanne;
Glover, Karl;
Chen, Jianli;
Campbell, Kim;
Bruckner, Phil L;
Rudd, Jackie C;
Haley, Scott;
Carver, Brett F;
Perry, Sid;
Sorrells, Mark E;
Akhunov, Eduard D

Publication type:

Article

De novo assembly and characterization of root transcriptome using Illumina paired-end sequencing and development of cSSR markers in sweetpotato (Ipomoea batatas).

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-726

By:

Wang, Zhangying;
Fang, Boping;
Chen, Jingyi;
Zhang, Xiongjian;
Luo, Zhongxia;
Huang, Lifei;
Chen, Xinliang;
Li, Yujun

Publication type:

Article

Whole genome sequencing of Saccharomyces cerevisiae: from genotype to phenotype for improved metabolic engineering applications.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-723

By:

Otero, José Manuel;
Vongsangnak, Wanwipa;
Asadollahi, Mohammad A;
Olivares-Hernandes, Roberto;
Maury, Jérôme;
Farinelli, Laurent;
Barlocher, Loïc;
Østerås, Magne;
Schalk, Michel;
Clark, Anthony;
Nielsen, Jens

Publication type:

Article

Accounting for multiple comparisons in a genome-wide association study (GWAS).

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-724

By:

Johnson, Randall C;
Nelson, George W;
Troyer, Jennifer L;
Lautenberger, James A;
Kessing, Bailey D;
Winkler, Cheryl A;
O'Brien, Stephen J

Publication type:

Article

Gene expression in Pseudomonas aeruginosa swarming motility.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-587

By:

Tremblay, Julien;
Déziel, Eric

Publication type:

Article

The genetic organisation of prokaryotic two-component system signalling pathways.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-720

By:

Williams, Robert HN;
Whitworth, David E

Publication type:

Article

Genome-wide SNPs and re-sequencing of growth habit and inflorescence genes in barley: implications for association mapping in germplasm arrays varying in size and structure.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-707

By:

Cuesta-Marcos, Alfonso;
Szűcs, Péter;
Close, Timothy J;
Filichkin, Tanya;
Muehlbauer, Gary J;
Smith, Kevin P;
Hayes, Patrick M

Publication type:

Article

Global characterization of the root transcriptome of a wild species of rice, Oryza longistaminata, by deep sequencing.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-705

By:

Yang, Haiyuan;
Hu, Liwei;
Hurek, Thomas;
Reinhold-Hurek, Barbara

Publication type:

Article

DNA methylation in glioblastoma: impact on gene expression and clinical outcome.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-701

By:

Etcheverry, Amandine;
Aubry, Marc;
de Tayrac, Marie;
Vauleon, Elodie;
Boniface, Rachel;
Guenot, Frederique;
Saikali, Stephan;
Hamlat, Abderrahmane;
Riffaud, Laurent;
Menei, Philippe;
Quillien, Veronique;
Mosser, Jean

Publication type:

Article

Human transcriptional interactome of chromatin contribute to gene co-expression.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-704

By:

Dong, Xiao;
Li, Chao;
Chen, Yunqin;
Ding, Guohui;
Li, Yixue

Publication type:

Article

The kinome of Phytophthora infestans reveals oomycete-specific innovations and links to other taxonomic groups.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-700

By:

Judelson, Howard S;
Ah-Fong, Audrey MV

Publication type:

Article

Genomic organisation analysis of novel immunoglobulin-like transcripts in Atlantic salmon (Salmo salar) reveals a tightly clustered and multigene family.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-697

By:

Østergaard, Anders E;
Lubieniecki, Krzysztof P;
Martin, Samuel AM;
Stet, René JM;
Davidson, William S;
Secombes, Christopher J

Publication type:

Article

Transcriptome analyses based on genetic screens for Pax3 myogenic targets in the mouse embryo.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-696

By:

Lagha, Mounia;
Sato, Takahiko;
Regnault, Béatrice;
Cumano, Ana;
Zuniga, Aimée;
Licht, Jonathan;
Relaix, Frédéric;
Buckingham, Margaret

Publication type:

Article

The venom composition of the parasitic wasp Chelonus inanitus resolved by combined expressed sequence tags analysis and proteomic approach.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-693

By:

Vincent, Bruno;
Kaeslin, Martha;
Roth, Thomas;
Heller, Manfred;
Poulain, Julie;
Cousserans, François;
Schaller, Johann;
Poirié, Marylène;
Lanzrein, Beatrice;
Drezen, Jean-Michel;
Moreau, Sébastien JM

Publication type:

Article

Simple sequence repeat variation in the Daphnia pulex genome.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-691

By:

Sung, Way;
Tucker, Abraham;
Bergeron, R Daniel;
Lynch, Michael;
Thomas, W Kelley

Publication type:

Article

Post-transcriptional regulation in the myo1Δ mutant of Saccharomyces cerevisiae.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-690

By:

Rivera-Ruiz, Marielis E;
Rodríguez-Quiñones, José F;
Akamine, Pearl;
Rodríguez-Medina, José R

Publication type:

Article

Perturbation of the yeast N-acetyltransferase NatB induces elevation of protein phosphorylation levels.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-685

By:

Helbig, Andreas O;
Rosati, Sara;
Pijnappel, Pim WWM;
van Breukelen, Bas;
Timmers, Marc HTH;
Mohammed, Shabaz;
Slijper, Monique;
Heck, Albert JR

Publication type:

Article

Evaluation of diversity among common beans (Phaseolus vulgaris L.) from two centers of domestication using 'omics' technologies.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-686

By:

Mensack, Meghan M;
Fitzgerald, Vanessa K;
Ryan, Elizabeth P;
Lewis, Matthew R;
Thompson, Henry J;
Brick, Mark A

Publication type:

Article

Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-688

By:

den Bakker, Henk C;
Cummings, Craig A;
Ferreira, Vania;
Vatta, Paolo;
Orsi, Renato H;
Degoricija, Lovorka;
Barker, Melissa;
Petrauskene, Olga;
Furtado, Manohar R;
Wiedmann, Martin

Publication type:

Article

Genome-wide binding of the orphan nuclear receptor TR4 suggests its general role in fundamental biological processes.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-689

By:

O'Geen, Henriette;
Lin, Yu-Hsuan;
Xu, Xiaoqin;
Echipare, Lorigail;
Komashko, Vitalina M;
He, Daniel;
Frietze, Seth;
Tanabe, Osamu;
Shi, Lihong;
Sartor, Maureen A;
Engel, James D;
Farnham, Peggy J

Publication type:

Article

Massive parallel sequencing of mRNA in identification of unannotated salinity stress-inducible transcripts in rice (Oryza sativa L.).

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-683

By:

Mizuno, Hiroshi;
Kawahara, Yoshihiro;
Sakai, Hiroaki;
Kanamori, Hiroyuki;
Wakimoto, Hironobu;
Yamagata, Harumi;
Oono, Youko;
Wu, Jianzhong;
Ikawa, Hiroshi;
Itoh, Takeshi;
Matsumoto, Takashi

Publication type:

Article

Analysis of transcript and protein overlap in a human osteosarcoma cell line.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-684

By:

Klevebring, Daniel;
Fagerberg, Linn;
Lundberg, Emma;
Emanuelsson, Olof;
Uhlén, Mathias;
Lundeberg, Joakim

Publication type:

Article

Metabolic and evolutionary insights into the closely-related species Streptomyces coelicolor and Streptomyces lividans deduced from high-resolution comparative genomic hybridization.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-682

By:

Lewis, Richard A;
Laing, Emma;
Allenby, Nicholas;
Bucca, Giselda;
Brenner, Volker;
Harrison, Marcus;
Kierzek, Andrzej M;
Smith, Colin P

Publication type:

Article

A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-671

By:

Lenfant, Nicolas;
Polanowska, Jolanta;
Bamps, Sophie;
Omi, Shizue;
Borg, Jean-Paul;
Reboul, Jérôme

Publication type:

Article

The non-clonality of drug resistance in Beijing-genotype isolates of Mycobacterium tuberculosis from the Western Cape of South Africa.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-670

By:

Ioerger, Thomas R;
Feng, Yicheng;
Chen, Xiaohua;
Dobos, Karen M;
Victor, Thomas C;
Streicher, Elizabeth M;
Warren, Robin M;
Gey van Pittius, Nicolaas C;
Van Helden, Paul D;
Sacchettini, James C

Publication type:

Article

A microbial detection array (MDA) for viral and bacterial detection.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-668

By:

Gardner, Shea N;
Jaing, Crystal J;
McLoughlin, Kevin S;
Slezak, Tom R

Publication type:

Article

Global profiling of histone and DNA methylation reveals epigenetic-based regulation of gene expression during epithelial to mesenchymal transition in prostate cells.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-669

By:

Ke, Xi-Song;
Qu, Yi;
Cheng, Yang;
Li, Wen-Cheng;
Rotter, Varda;
Øyan, Anne Margrete;
Kalland, Karl-Henning

Publication type:

Article

Role of an ER stress response element in regulating the bidirectional promoter of the mouse CRELD2 - ALG12 gene pair.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-664

By:

Oh-hashi, Kentaro;
Koga, Hisashi;
Ikeda, Shun;
Shimada, Kiyo;
Hirata, Yoko;
Kiuchi, Kazutoshi

Publication type:

Article

Structure and dynamics of the operon map of Buchnera aphidicola sp. strain APS.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-666

By:

Brinza, Lilia;
Calevro, Federica;
Duport, Gabrielle;
Gaget, Karen;
Gautier, Christian;
Charles, Hubert

Publication type:

Article

Skeletal muscle gene expression in response to resistance exercise: sex specific regulation.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-659

By:

Liu, Dongmei;
Sartor, Maureen A;
Nader, Gustavo A;
Gutmann, Laurie;
Treutelaar, Mary K;
Pistilli, Emidio E;
IglayReger, Heidi B;
Burant, Charles F;
Hoffman, Eric P;
Gordon, Paul M

Publication type:

Article

Developing high throughput genotyped chromosome segment substitution lines based on population whole-genome re-sequencing in rice (Oryza sativa L.).

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-656

By:

Xu, Jianjun;
Zhao, Qiang;
Du, Peina;
Xu, Chenwu;
Wang, Baohe;
Feng, Qi;
Liu, Qiaoquan;
Tang, Shuzhu;
Gu, Minghong;
Han, Bin;
Liang, Guohua

Publication type:

Article

Comparative analyses of vertebrate posterior HoxD clusters reveal atypical cluster architecture in the caecilian Typhlonectes natans.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-658

By:

Mannaert, An;
Amemiya, Chris T;
Bossuyt, Franky

Publication type:

Article

Bovine proteins containing poly-glutamine repeats are often polymorphic and enriched for components of transcriptional regulatory complexes.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-654

By:

Whan, Vicki;
Hobbs, Matthew;
McWilliam, Sean;
Lynn, David J;
Lutzow, Ylva Strandberg;
Khatkar, Mehar;
Barendse, William;
Raadsma, Herman;
Tellam, Ross L

Publication type:

Article

Transcriptome analysis of a barley breeding program examines gene expression diversity and reveals target genes for malting quality improvement.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-653

By:

Muñoz-Amatriaín, María;
Xiong, Yanwen;
Schmitt, Mark R;
Bilgic, Hatice;
Budde, Allen D;
Chao, Shiaoman;
Smith, Kevin P;
Muehlbauer, Gary J

Publication type:

Article

LAB-Secretome: a genome-scale comparative analysis of the predicted extracellular and surface-associated proteins of Lactic Acid Bacteria.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-651

By:

Zhou, Miaomiao;
Theunissen, Daniel;
Wels, Michiel;
Siezen, Roland J

Publication type:

Article

Independent evolution of the core and accessory gene sets in the genus Neisseria: insights gained from the genome of Neisseria lactamica isolate 020-06.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-652

By:

Bennett, Julia S;
Bentley, Stephen D;
Vernikos, Georgios S;
Quail, Michael A;
Cherevach, Inna;
White, Brian;
Parkhill, Julian;
Maiden, Martin CJ

Publication type:

Article

Imprinted genes show unique patterns of sequence conservation.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-649

By:

Hutter, Barbara;
Bieg, Matthias;
Helms, Volkhard;
Paulsen, Martina

Publication type:

Article

Transcriptomic and metabolomic shifts in rice roots in response to Cr (VI) stress.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-648

By:

Dubey, Sonali;
Misra, Prashant;
Dwivedi, Sanjay;
Chatterjee, Sandipan;
Bag, Sumit K;
Mantri, Shrikant;
Asif, Mehar H;
Rai, Arti;
Kumar, Smita;
Shri, Manju;
Tripathi, Preeti;
Tripathi, Rudra D;
Trivedi, Prabodh K;
Chakrabarty, Debasis;
Tuli, Rakesh

Publication type:

Article

POLYAR, a new computer program for prediction of poly(A) sites in human sequences.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-646

By:

Akhtar, Malik Nadeem;
Bukhari, Syed Abbas;
Fazal, Zeeshan;
Qamar, Raheel;
Shahmuradov, Ilham A

Publication type:

Article

Bovine Genome Database: supporting community annotation and analysis of the Bos taurus genome.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-645

By:

Reese, Justin T;
Childers, Christopher P;
Sundaram, Jaideep P;
Dickens, C Michael;
Childs, Kevin L;
Vile, Donald C;
Elsik, Christine G

Publication type:

Article

Identification and developmental expression of the full complement of Cytochrome P450 genes in Zebrafish.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-643

By:

Goldstone, Jared V;
McArthur, Andrew G;
Kubota, Akira;
Zanette, Juliano;
Parente, Thiago;
Jönsson, Maria E;
Nelson, David R;
Stegeman, John J

Publication type:

Article

From an electrophoretic mobility shift assay to isolated transcription factors: a fast genomic-proteomic approach.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-644

By:

Mach-Aigner, Astrid R;
Grosstessner-Hain, Karin;
Poças-Fonseca, Marcio J;
Mechtler, Karl;
Mach, Robert L

Publication type:

Article

Genome-wide promoter analysis of histone modifications in human monocyte-derived antigen presenting cells.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-642

By:

Tserel, Liina;
Kolde, Raivo;
Rebane, Ana;
Kisand, Kai;
Org, Tõnis;
Peterson, Hedi;
Vilo, Jaak;
Peterson, Pärt

Publication type:

Article