Works matching IS 14712164 AND DT 2009 AND VI 10

Results: 714

A proposed minimum skill set for university graduates to meet the informatics needs and challenges of the "-omics" era.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S36

By:

Tin Wee Tan;
Shen Jean Lim;
Khan, Asif M.;
Shoba Ranganathan

Publication type:

Article

Proceedings from Asia Pacific Bioinformatics Network (APBioNet) Eighth International Conference on Bioinformatics (InCoB2009), Singapore, 7-11 September 2009.

Published in:: BMC Genomics, 2009, v. 10, p. S1
Publication type:: Article

TTSMapping: integrative WEB tool for analysis of triplex formation target DNA Sequences, G-quadruplets and non-protein coding regulatory DNA elements in the human genome.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S9

By:

Jenjaroenpun, Piroon;
Kuznetsov, Vladimir A.

Publication type:

Article

Computational identification and experimental validation of PPRE motifs in NHE1 and MnSOD genes of Human.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S5

By:

Venkatachalam, Gireedhar;
Kumar, Alan Prem;
Loo Ser Yue;
Pervaiz, Shazib;
Clement, Marie Veronique;
Sakharkar, Meena Kishore

Publication type:

Article

RExPrimer: an integrated primer designing tool increases PCR effectiveness by avoiding 3′ SNP-in-primer and mis-priming from structural variation.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S4

By:

Piriyapongsa, Jittima;
Ngamphiw, Chumpol;
Assawamakin, Anunchai;
Wangkumhang, Pongsakorn;
Suwannasri, Payiarat;
Ruangrit, Uttapong;
Agavatpanitch, Gallissara;
Tongsima, Sissades

Publication type:

Article

Development of a database system for mapping insertional mutations onto the mouse genome with large-scale experimental data.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S7

By:

Wenwei Yang;
Ke Jin;
Xing Xie;
Dongsheng Li;
Jigang Yang;
Li Wang;
Ning Gu;
Yang Zhong;
Sun, Ling V.

Publication type:

Article

BioBarcode: a general DNA barcoding database and server platform for Asian biodiversity resources.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S8

By:

Jeongheui Lim;
Sang-Yoon Kim;
Sungmin Kim;
Hae-Seok Eo;
Chang-Bae Kim;
Woon Kee Paek;
Won Kim;
Jong Bhak

Publication type:

Article

COMUS: Clinician-Oriented locus-specific MUtation detection and deposition System.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S35

By:

Sungwoong Jho;
Byoung-Chul Kim;
Ho Ghang;
Ji-Han Kim;
Daeui Park;
Hak-Min Kim;
Soo-young Jung;
Ki-young Yoo;
Hee-Jin Kim;
Sunghoon Lee;
Jong Bhak

Publication type:

Article

A particle swarm based hybrid system for imbalanced medical data sampling.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S34

By:

Pengyi Yang;
Liang Xu;
Zhou, Bing B.;
Zhang, Zili;
Zomaya, Albert Y.

Publication type:

Article

A multi-factor model for caspase degradome prediction.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S6

By:

Wee, Lawrence J. K.;
Joo Chuan Tong;
Tin Wee Tan;
Ranganathan, Shoba

Publication type:

Article

A multi-species comparative structural bioinformatics analysis of inherited mutations in α-D-Mannosidase reveals strong genotype-phenotype correlation.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S33

By:

Khan, Javed Mohammed;
Ranganathan, Shoba

Publication type:

Article

PDbase: a database of Parkinson's Disease-related genes and genetic variation using substantia nigra ESTs.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S32

By:

Jin Ok Yang;
Woo-Yeon Kim;
So-Young Jeong;
Jung-Hwa Oh;
Sungwoong Jho;
Jong Bhak;
Nam-Soon Kim

Publication type:

Article

Anomaly detection in gene expression via stochastic models of gene regulatory networks.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S26

By:

Haseong Kim;
Gelenbe, Erol

Publication type:

Article

The oligonucleotide frequency derived error gradient and its application to the binning of metagenome fragments.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S10

By:

Saeed, Isaam;
Halgamuge, Saman K.

Publication type:

Article

Human liver rate-limiting enzymes influence metabolic flux via branch points and inhibitors.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S31

By:

Min Zhao;
Hong Qu

Publication type:

Article

Identification of cell cycle-related regulatory motifs using a kernel canonical correlation analysis.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S29

By:

Je-Keun Rhee;
Je-Gun Joung;
Jeong-Ho Chang;
Zhangjun Fei;
Byoung-Tak Zhang

Publication type:

Article

Detecting robust time-delayed regulation in Mycobacterium tuberculosis.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S28

By:

Chaturvedi, Iti;
Rajapakse, Jagath C.

Publication type:

Article

Characterizing nucleosome dynamics from genomic and epigenetic information using rule induction learning.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S27

By:

Ngoc Tu Le;
Tu Bao Ho;
Dang Hung Tran

Publication type:

Article

Alternative paths in HIV-1 targeted human signal transduction pathways.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S30

By:

Balakrishnan, Sivaraman;
Tastan, Oznur;
Carbonell, Jaime;
Klein-Seetharaman, Judith

Publication type:

Article

An empirical study of choosing efficient discriminative seeds for oligonucleotide design.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S3

By:

Won-Hyoung Chung;
Seong-Bae Park

Publication type:

Article

Prediction of avian influenza A binding preference to human receptor using conformational analysis of receptor bound to hemagglutinin.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S24

By:

Nipa Jongkon;
Wanwimon Mokmak;
Daungmanee Chuakheaw;
Shaw, Philip J.;
Sissades Tongsima;
Chak Sangma

Publication type:

Article

DNA-binding residues and binding mode prediction with binding-mechanism concerned models.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S23

By:

Yu-Feng Huang;
Chun-Chin Huang;
Yu-Cheng Liu;
Yen-Jen Oyang;
Chien-Kang Huang

Publication type:

Article

A modular kernel approach for integrative analysis of protein domain boundaries.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S21

By:

Yoo, Paul D.;
Bing Bing Zhou;
Zomaya, Albert Y.

Publication type:

Article

MitoInteractome: Mitochondrial protein interactome database, and its application in 'aging network' analysis.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S20

By:

Rohit Reja;
Venkatakrishnan, A. J.;
Jungwoo Lee;
Byoung-Chul Kim;
Jea-Woon Ryu;
Sungsam Gong;
Jong Bhak;
Daeui Park

Publication type:

Article

Phylogenetic reconstruction using secondary structures and sequence motifs of ITS2 rDNA of Paragonimus westermani (Kerbert, 1878) Braun, 1899 (Digenea: Paragonimidae) and related species.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S25

By:

Prasad, Pramod Kumar;
Tandon, Veena;
Biswal, Devendra Kumar;
Goswami, Lalit Mohan;
Chatterjee, Anupam

Publication type:

Article

A sequence-based hybrid predictor for identifying conformationally ambivalent regions in proteins.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S22

By:

Yu-Cheng Liu;
Meng-Han Yang;
Win-Li Lin;
Chien-Kang Huang;
Yen-Jen Oyang

Publication type:

Article

Extending Asia Pacific bioinformatics into new realms in the "-omics" era.

Published in:

2009

By:

Ranganathan, Shoba;
Eisenhaber, Frank;
Joo Chuan Tong;
Tin Wee Tan

Publication type:

Proceeding

Genome-wide analysis of alternative splicing in cow: implications in bovine as a model for human diseases.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S11

By:

Chacko, Elsa;
Ranganathan, Shoba

Publication type:

Article

The transcriptional response of Pasteurella multocida to three classes of antibiotics.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S2-S4

By:

Nanduri, Bindu;
Shack, Leslie A.;
Burgess, Shane C.;
Lawrence, Mark L.

Publication type:

Article

BOAT: Basic Oligonucleotide Alignment Tool.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S2

By:

Shu-Qi Zhao;
Jun Wang;
Li Zhang;
Jiong-Tang Li;
Xiaocheng Gu;
Ge Gao;
Liping Wei

Publication type:

Article

Comparative study of protein-protein interaction observed in PolyGalacturonase-Inhibiting Proteins from Phaseolus vulgaris and Glycine max and PolyGalacturonase from Fusarium moniliforme.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S19

By:

Maulik, Aditi;
Ghosh, Hiren;
Basu, Soumalee

Publication type:

Article

PutidaNET: Interactome database service and network analysis of Pseudomonas putida KT2440.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S18

By:

Seong-Jin Park;
Jong-Soon Choi;
Byoung-Chul Kim;
Seong-Woong Jho;
Jea-Woon Ryu;
Daeui Park;
Kyung-A Lee;
Jong Bhak;
Seung Il Kim

Publication type:

Article

MINER: exploratory analysis of gene interaction networks by machine learning from expression data.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S17

By:

Kadupitige, Sidath Randeni;
Kin Chun Leung;
Sellmeier, Julia;
Sivieng, Jane;
Catchpoole, Daniel R.;
Bain, Michael E.;
Gaëta, Bruno A

Publication type:

Article

A model selection approach to discover age-dependent gene expression patterns using quantile regression models.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S16

By:

Ho, Joshua W. K.;
Stefani, Maurizio;
Remedios, Cristobal G. dos;
Charleston, Michael A.

Publication type:

Article

Improving gene expression similarity measurement using pathway-based analytic dimension.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S15

By:

Changwon Keum;
Jung Hoon Woo;
Won Seok Oh;
Sue-Nie Park;
Kyoung Tai No

Publication type:

Article

MapNext: a software tool for spliced and unspliced alignments and SNP detection of short sequence reads.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S13

By:

Hua Bao;
Yuanyan Xiong;
Hui Guo;
Renchao Zhou;
Xuemei Lu;
Zhen Yang;
Yang Zhong;
Suhua Shi

Publication type:

Article

Measuring similarity between gene expression profiles: a Bayesian approach.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S14

By:

Viet-Anh Nguyen;
Lió, Pietro

Publication type:

Article

MitoVariome: a variome database of human mitochondrial DNA.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S12

By:

Yong Seok Lee;
Woo-Yeon Kim;
Mihyun Ji;
Ji Han Kim;
Jong Bhak

Publication type:

Article

A bacterial artificial chromosome library for the Australian saltwater crocodile (Crocodylus porosus) and its utilization in gene isolation and genome characterization.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S2-S9

By:

Xueyan Shan;
Ray, David A.;
Bunge, John A.;
Peterson, Daniel G.

Publication type:

Article

Integrative sequence and tissue expression profiling of chicken and mammalian aquaporins.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S2-S7

By:

Isokpehi, Raphael D.;
Rajnarayanan, Rajendram V.;
Jeffries, Cynthia D.;
Oyeleye, Tolulola O.;
Cohly, Hari H. P.

Publication type:

Article

BioNetBuilder2.0: bringing systems biology to chicken and other model organisms.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S2-S6

By:

Konieczka, Jay H.;
Drew, Kevin;
Pine, Alex;
Belasco, Kevin;
Davey, Sean;
Yatskievych, Tatiana A.;
Bonneau, Richard;
Antin, Parker B.

Publication type:

Article

USDA animal genomics program: the view from the chicken coop.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S2-S1

By:

Fulton, Janet E.

Publication type:

Article

Genome evolution in Reptilia: in silico chicken mapping of 12,000 BAC-end sequences from two reptiles and a basal bird.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S2-S8

By:

Chapus, Charles;
Edwards, Scott V.

Publication type:

Article

Application of chicken microarrays for gene expression analysis in other avian species.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S2-S3

By:

Crowley, Tamsyn M.;
Haring, Volker R.;
Burggraaf, Simon;
Moore, Robert J.

Publication type:

Article

Extent and consistency of linkage disequilibrium and identification of DNA markers for production and egg quality traits in commercial layer chicken populations.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S2-S2

By:

Abasht, Behnam;
Sandford, Erin;
Arango, Jesus;
Settar, Petek;
Fulton, Janet E.;
O'Sullivan, Neil P.;
Hassen, Abebe;
Habier, David;
Fernando, Rohan L.;
Dekkers, Jack C. M.;
Lamont, Susan J.

Publication type:

Article

The value of avian genomics to the conservation of wildlife.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S2-S10

By:

Romanov, Michael N.;
Tuttle, Elaina M.;
Houck, Marlys L.;
Modi, William S.;
Chemnick, Leona G.;
Korody, Marisa L.;
Stremel Mork, Emily M.;
Otten, Christie A.;
Renner, Tanya;
Jones, Kenneth C.;
Dandekar, Sugandha;
Papp, Jeanette C.;
Yang Da;
Green, Eric D.;
Magrini, Vincent;
Hickenbotham, Matthew T.;
Glasscock, Jarret;
McGrath, Sean;
Mardis, Elaine R.;
Ryder, Oliver A.

Publication type:

Article

The chicken gene nomenclature committee report.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S2-S5

By:

Burt, David W.;
Carrë, Wilfrid;
Fell, Mark;
Law, Andy S.;
Antin, Parker B.;
Maglott, Donna R.;
Weber, Janet A.;
Schmidt, Carl J.;
Burgess, Shane C.;
McCarthy, Fiona M.

Publication type:

Article

Introduction to the Proceedings of the Avian Genomics and Gene Ontology Annotation Workshop.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S2-I1

By:

Bridges, Susan M.;
Burgess, Shane C.;
McCarthy, Fiona M.

Publication type:

Article

PDA: an automatic and comprehensive analysis program for protein-DNA complex structures.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S1-S13

By:

RyangGuk Kim;
Jun-tao Guo

Publication type:

Article

Simultaneous analysis of distinct Omics data sets with integration of biological knowledge: Multiple Factor Analysis approach.

Published in:: BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-32
Publication type:: Article