Works matching IS 14712164 AND DT 2004 AND VI 5

Results: 99

The association of Alu repeats with the generation of potential AU-rich elements (ARE) at 3' untranslated regions.

Published in:

BMC Genomics, 2004, v. 5, p. 97, doi. 10.1186/1471-2164-5-97

By:

Hyeong Jun An;
Doheon Lee;
Kwang Hyung Lee;
Jonghwa Bhak

Publication type:

Article

Arrays of ultraconserved non-coding regions span the loci of key developmental genes in vertebrate genomes.

Published in:

BMC Genomics, 2004, v. 5, p. 99, doi. 10.1186/1471-2164-5-99

By:

Sandelin, Albin;
Bailey, Peter;
Bruce, Sara;
Engström, Pär G.;
Klos, Joanna M.;
Wasserman, Wyeth W.;
Ericson, Johan;
Lenhard, Boris

Publication type:

Article

Evaluation of the chicken transcriptome by SAGE of B cells and the DT40 cell line.

Published in:

BMC Genomics, 2004, v. 5, p. 98, doi. 10.1186/1471-2164-5-98

By:

Wahl, Matthias B.;
Caldwell, Randolph B.;
Kierzek, Andrzej M.;
Arakawa, Hiroshi;
Eyras, Eduardo;
Hubner, Nina;
Jung, Christian;
Soeldenwagner, Manuel;
Cervelli, Manuela;
Yan-Dong Wang;
Liebscher, Volkmar;
Buerstedde, Jean-Marie

Publication type:

Article

FunnyBase: a systems level functional annotation of Fundulus ESTs for the analysis of gene expression.

Published in:

BMC Genomics, 2004, v. 5, p. 1, doi. 10.1186/1471-2164-5-96

By:

Paschall, Justin E.;
Oleksiak, Marjorie F.;
VanWye, Jeffrey D.;
Roach, Jennifer L.;
Whitehead, J. Andrew;
Wyckoff, Gerald J.;
Kolell, Kevin J.;
Crawford, Douglas L.

Publication type:

Article

Homopolymer tract length dependent enrichments in functional regions of 27 eukaryotes and their novel dependence on the organism DNA (G+C)% composition.

Published in:

BMC Genomics, 2004, v. 5, p. 95, doi. 10.1186/1471-2164-5-95

By:

Yue Zhou;
Bizzaro, Jeffrey W.;
Marx, Kenneth A.

Publication type:

Article

Prognostic meta-signature of breast cancer developed by two-stage mixture modeling of microarray data.

Published in:

BMC Genomics, 2004, v. 5, p. 94, doi. 10.1186/1471-2164-5-94

By:

Ronglai Shen;
Ghosh, Debashis;
Chinnaiyan, Arul M.

Publication type:

Article

GOLD.db: genomics of lipid-associated disorders database.

Published in:

BMC Genomics, 2004, v. 5, p. 93, doi. 10.1186/1471-2164-5-93

By:

Hackl, Hubert;
Maurer, Michael;
Mlecnik, Bernhard;
Hartler, Jürgen;
Stocker, Gernot;
Miranda-Saavedra, Diego;
Trajanoski, Zlatko

Publication type:

Article

Polymorphic segmental duplications at 8p23.1 challenge the determination of individual defensin gene repertoires and the assembly of a contiguous human reference sequence.

Published in:

BMC Genomics, 2004, v. 5, p. 92, doi. 10.1186/1471-2164-5-92

By:

Taudien, Stefan;
Galgoczy, Petra;
Huse, Klaus;
Reichwald, Kathrin;
Schilhabel, Markus;
Szafranski, Karol;
Shimizu, Atsushi;
Asakawa, Shuichi;
Frankish, Adam;
Loncarevic, Ivan F.;
Shimizu, Nobuyoshi;
Siddiqui, Roman;
Platzer, Matthias

Publication type:

Article

Lower rate of genomic variation identified in the trans-membrane domain of monoamine sub-class of Human G-Protein Coupled Receptors: The Human GPCR-DB Database.

Published in:

BMC Genomics, 2004, v. 5, p. 91, doi. 10.1186/1471-2164-5-91

By:

Wahlestedt, Claes;
Brookes, Anthony J.;
Mottagui-Tabar, Salim

Publication type:

Article

Characterization of the chicken inward rectifier K<sup>+</sup> channel IRK1/Kir2.1 gene.

Published in:

BMC Genomics, 2004, v. 5, p. 1, doi. 10.1186/1471-2164-5-90

By:

Mutai, Hideki;
Kenyon, Lawrence C.;
Locke, Emily;
Kikuchi, Nami;
Oberholtzer, John Carl

Publication type:

Article

The rehydration transcriptome of the desiccation-tolerant bryophyte Tortula ruralis: transcript classification and analysis.

Published in:

BMC Genomics, 2004, v. 5, p. 1, doi. 10.1186/1471-2164-5-89

By:

Oliver, Melvin J.;
Dowd, Scot E.;
Zaragoza, Joaquin;
Mauget, Steven A.;
Payton, Paxton R.

Publication type:

Article

Comparison of frozen and RNALater solid tissue storage methods for use in RNA expression microarrays.

Published in:

BMC Genomics, 2004, v. 5, p. 88, doi. 10.1186/1471-2164-5-88

By:

Mutter, George L.;
Zahrieh, David;
Chunmei Liu;
Neuberg, Donna;
Finkelstein, David;
Baker, Heather E.;
Warrington, Janet A.

Publication type:

Article

Sample size for detecting differentially expressed genes in microarray experiments.

Published in:

BMC Genomics, 2004, v. 5, p. 87, doi. 10.1186/1471-2164-5-87

By:

Caimiao Wei;
Jiangning Li;
Bumgarner, Roger E.

Publication type:

Article

Reconstruction of putative DNA virus from endogenous rice tungro bacilliform virus-like sequences in the rice genome: implications for integration and evolution.

Published in:

BMC Genomics, 2004, v. 5, p. 80, doi. 10.1186/1471-2164-5-80

By:

Kunii, Motoyuki;
Kanda, Masanori;
Nagano, Hironori;
Uyeda, Ichiro;
Kishima, Yuji;
Sano, Yoshio

Publication type:

Article

Genomic structure and cloning of two transcript isoforms of human Sp8.

Published in:

BMC Genomics, 2004, v. 5, p. 86, doi. 10.1186/1471-2164-5-86

By:

Milona, Maria-athina;
Gough, Julie E.;
Edgar, Alasdair J.

Publication type:

Article

Protein kinases of the human malaria parasite Plasmodium falciparum: the kinome of a divergent eukaryote.

Published in:

BMC Genomics, 2004, v. 5, p. 1, doi. 10.1186/1471-2164-5-79

By:

Ward, Pauline;
Equinet, Leila;
Packer, Jeremy;
Doerig, Christian

Publication type:

Article

Integrating linkage and radiation hybrid mapping data for bovine chromosome 15.

Published in:

BMC Genomics, 2004, v. 5, p. 77, doi. 10.1186/1471-2164-5-77

By:

Snelling, Warren M.;
Gautier, Mathieu;
Keele, John W.;
Smith, Timothy P. L.;
Stone, Roger T.;
Harhay, Gregory P.;
Bennett, Gary L.;
Ihara, Naoya;
Takasuga, Akiko;
Takeda, Haruko;
Sugimoto, Yoshikazu;
Eggen, André

Publication type:

Article

Functional characterization in Caenorhabditis elegans of transmembrane worm-human orthologs.

Published in:

BMC Genomics, 2004, v. 5, p. 1, doi. 10.1186/1471-2164-5-85

By:

Henricson, Anna;
Sonnhammer, Erik L. L.;
Baillie, David L.;
Gomes, Ana Vaz

Publication type:

Article

GeneLink: a database to facilitate genetic studies of complex traits.

Published in:

BMC Genomics, 2004, v. 5, p. 81, doi. 10.1186/1471-2164-5-81

By:

Gillanders, Elizabeth M.;
Masiello, Anthony;
Gildea, Derek;
Umayam, Lowell;
Duggal, Priya;
Jones, Mary Pat;
Klein, Alison P.;
Freas-Lutz, Diana;
Ibay, Grace;
Trout, Ken;
Wolfsberg, Tyra G.;
Trent, Jeffrey M.;
Bailey-Wilson, Joan E.;
Baxevanis, Andreas D.

Publication type:

Article

i-Genome: A database to summarize oligonucleotide data in genomes.

Published in:

BMC Genomics, 2004, v. 5, p. 78, doi. 10.1186/1471-2164-5-78

By:

Feng-Mao Lin;
Hsien-Da Huang;
Yu-Chung Chang;
Jorng-Tzong Horng

Publication type:

Article

The use of Open Reading frame ESTs (ORESTES) for analysis of the honey bee transcriptome.

Published in:

BMC Genomics, 2004, v. 5, p. 84, doi. 10.1186/1471-2164-5-84

By:

Nunes, Francis M. F.;
Valente, Valeria;
Sousa, Josane F.;
Cunha, Marco A. V.;
Pinheiro, Daniel G.;
Maia, Rafaela M.;
Araujo, Daniela D.;
Costa, Maria C. R.;
Martins, Waleska K.;
Carvalho, Alex F.;
Monesi, Nadia;
Nascimento, Adriana M.;
Peixoto, Pablo M. V.;
Silva, Maria F. R.;
Ramos, Ricardo G. P.;
Reis, Luis F. L.;
Dias-Neto, Emmanuel;
Souza, Sandro J.;
Simpson, Andrew J. G.;
Zago, Marco A.

Publication type:

Article

Cross-species hybridisation of human and bovine orthologous genes on high density cDNA microarrays.

Published in:

BMC Genomics, 2004, v. 5, p. 83, doi. 10.1186/1471-2164-5-83

By:

Adjaye, James;
Herwig, Ralf;
Herrmann, Doris;
Wruck, Wasco;
BenKahla, Alia;
Brink, Thore C.;
Nowak, Monika;
Carnwath, Joseph W.;
Hultschig, Claus;
Niemann, Heiner;
Lehrach, Hans

Publication type:

Article

Microarray and comparative genomics-based identification of genes and gene regulatory regions of the mouse immune system.

Published in:

BMC Genomics, 2004, v. 5, p. 82, doi. 10.1186/1471-2164-5-82

By:

Hutton, John J.;
Jegga, Anil G.;
Sue Kong;
Gupta, Ashima;
Ebert, Catherine;
Williams, Sarah;
Katz, Jonathan D.;
Aronow, Bruce J.

Publication type:

Article

Evaluation of sense-strand mRNA amplification by comparative quantitative PCR.

Published in:

BMC Genomics, 2004, v. 5, p. 76, doi. 10.1186/1471-2164-5-76

By:

Goff, Loyal A.;
Bowers, Jessica;
Schwalm, Jaime;
Howerton, Kevin;
Getts, Robert C.;
Hart, Ronald P.

Publication type:

Article

Extreme conservation of noncoding DNA near HoxD complex of vertebrates.

Published in:

BMC Genomics, 2004, v. 5, p. 1, doi. 10.1186/1471-2164-5-75

By:

Sabarinadh, Chilaka;
Subramanian, Subbaya;
Tripathi, Anshuman;
Mishra, Rakesh K.

Publication type:

Article

Genome wide analysis of common and specific stress responses in adult drosophila melanogaster.

Published in:

BMC Genomics, 2004, v. 5, p. 74, doi. 10.1186/1471-2164-5-74

By:

Girardot, Fabrice;
Monnier, Véronique;
Tricoire, Hervé

Publication type:

Article

Microarrays for global expression constructed with a low redundancy set of 27,500 sequenced cDNAs representing an array of developmental stages and physiological conditions of the soybean plant.

Published in:

BMC Genomics, 2004, v. 5, p. 73, doi. 10.1186/1471-2164-5-73

By:

Vodkin, Lila O.;
Khanna, Anupama;
Shealy, Robin;
Clough, Steven J.;
Gonzalez, Delkin Orlando;
Philip, Reena;
Zabala, Gracia;
Thibaud-Nissen, Françoise;
Sidarous, Mark;
Strömvik, Martina V.;
Shoop, Elizabeth;
Schmidt, Christina;
Retzel, Ernest;
Erpelding, John;
Shoemaker, Randy C.;
Rodriguez-Huete, Alicia M.;
Polacco, Joseph C.;
Coryell, Virginia;
Keim, Paul;
Gong, George

Publication type:

Article

Complete mitochondrial genome sequence of Urechis caupo, a representative of the phylum Echiura.

Published in:

BMC Genomics, 2004, v. 5, p. 1, doi. 10.1186/1471-2164-5-67

By:

Boore, Jeffrey L.

Publication type:

Article

Strengths and weaknesses of EST-based prediction of tissue-specific alternative splicing.

Published in:

BMC Genomics, 2004, v. 5, p. 72, doi. 10.1186/1471-2164-5-72

By:

Gupta, Shobhit;
Zink, Dorothea;
Korn, Bernhard;
Vingron, Martin;
Haas, Stefan A.

Publication type:

Article

From biomedicine to natural history research: EST resources for ambystomatid salamanders.

Published in:

BMC Genomics, 2004, v. 5, p. 54, doi. 10.1186/1471-2164-5-54

By:

Putta, Srikrishna;
Smith, Jeramiah J.;
Walker, John A.;
Rondet, Mathieu;
Weisrock, David W.;
Monaghan, James;
Samuels, Amy K.;
Kump, Kevin;
King, David C.;
Maness, Nicholas J.;
Habermann, Bianca;
Tanaka, Elly;
Bryant, Susan V.;
Gardiner, David M.;
Parichy, David M.;
Voss, S. Randal

Publication type:

Article

Immobilized probe and glass surface chemistry as variables in microarray fabrication.

Published in:

BMC Genomics, 2004, v. 5, p. 53, doi. 10.1186/1471-2164-5-53

By:

Hessner, Martin J.;
Meyer, Lisa;
Tackes, Jennifer;
Muheisen, Sanaa;
Xujing Wang

Publication type:

Article

Inter-Platform comparability of microarrays in acute lymphoblastic leukemia.

Published in:

BMC Genomics, 2004, v. 5, p. 71, doi. 10.1186/1471-2164-5-71

By:

Mitchell, Stephanie A.;
Brown, Kevin M.;
Henry, Michael M.;
Mintz, Michelle;
Catchpoole, Daniel;
LaFleur, Bonnie;
Stephan, Dietrich A.

Publication type:

Article

Selection and validation of endogenous reference genes using a high throughput approach.

Published in:

BMC Genomics, 2004, v. 5, p. 55, doi. 10.1186/1471-2164-5-55

By:

Ping Jin;
Yingdong Zhao;
Ngalame, Yvonne;
Panelli, Monica C.;
Nagorsen, Dirk;
Monsurró, Vladia;
Smith, Kina;
Nan Hu;
Hua Su;
Taylor, Phil R.;
Marincola, Francesco M.;
Ena Wang

Publication type:

Article

Expression profile of genes regulated by activity of the Na-H exchanger NHE1.

Published in:

BMC Genomics, 2004, v. 5, p. 46, doi. 10.1186/1471-2164-5-46

By:

Putney, Luanna K.;
Barber, Diane L.

Publication type:

Article

cDNA array-CGH profiling identifies genomic alterations specific to stage and MYCN-amplification in neuroblastoma.

Published in:

BMC Genomics, 2004, v. 5, p. 1, doi. 10.1186/1471-2164-5-70

By:

Qing-Rong Chen;
Bilke, Sven;
Wei, Jun S.;
Whiteford, Craig C.;
Cenacchi, Nicola;
Krasnoselsky, Alexei L.;
Greer, Braden T.;
Chang-Gue Son;
Westermann, Frank;
Berthold, Frank;
Schwab, Manfred;
Catchpoole, Daniel;
Khan, Javed

Publication type:

Article

Comparative genomics of cyclin-dependent kinases suggest co-evolution of the RNAP II C-terminal domain and CTD-directed CDKs.

Published in:

BMC Genomics, 2004, v. 5, p. 69, doi. 10.1186/1471-2164-5-69

By:

Zhenhua Guo;
Stiller, John W.

Publication type:

Article

PEDRo: A database for storing, searching and disseminating experimental proteomics data.

Published in:

BMC Genomics, 2004, v. 5, p. 68, doi. 10.1186/1471-2164-5-68

By:

Garwood, Kevin;
McLaughlin, Thomas;
Garwood, Chris;
Joens, Scott;
Morrison, Norman;
Taylor, Christopher F.;
Carroll, Kathleen;
Evans, Caroline;
Whetton, Anthony D.;
Hart, Sarah;
Stead, David;
Zhikang Yin;
Brown, Alistair J. P.;
Hesketh, Andrew;
Chater, Keith;
Hansson, Lena;
Mewissen, Muriel;
Ghazal, Peter;
Howard, Julie;
Lilley, Kathryn S.

Publication type:

Article

A high-resolution radiation hybrid map of chicken chromosome 5 and comparison with human chromosomes.

Published in:

BMC Genomics, 2004, v. 5, p. 66, doi. 10.1186/1471-2164-5-66

By:

Pitel, Frédérique;
Abasht, Behnam;
Morisson, Mireille;
Crooijmans, Richard P. M. A.;
Vignoles, Florence;
Leroux, Sophie;
Feve, Katia;
Bardes, Suzanne;
Milan, Denis;
Lagarrigue, Sandrine;
Groenen, Martien A. M.;
Douaire, Madeleine;
Vignal, Alain

Publication type:

Article

An integrated 4249 marker FISH/RH map of the canine genome.

Published in:

BMC Genomics, 2004, v. 5, p. 65, doi. 10.1186/1471-2164-5-65

By:

Breen, Matthew;
Hitte, Christophe;
Lorentzen, Travis D.;
Thomas, Rachael;
Cadieu, Edouard;
Sabacan, Leah;
Scott, Allyson;
Evanno, Gwenaelle;
Parker, Heidi G.;
Kirkness, Ewen F.;
Hudson, Ruth;
Guyon, Richard;
Mahairas, Gregory G.;
Gelfenbeyn, Boris;
Fraser, Claire M.;
André, Catherine;
Galibert, Francis;
Ostrander, Elaine A.

Publication type:

Article

A method for detecting and correcting feature misidentification on expression microarrays.

Published in:

BMC Genomics, 2004, v. 5, p. 64, doi. 10.1186/1471-2164-5-64

By:

I-Ping Tu;
Schaner, Marci;
Diehn, Maximilian;
Sikic, Branimir I.;
Brown, Patrick O.;
Botstein, David;
Fero, Michael J.

Publication type:

Article

Integrated analysis of metabolic phenotypes in Saccharomyces cerevisiae.

Published in:

BMC Genomics, 2004, v. 5, p. 1, doi. 10.1186/1471-2164-5-63

By:

Duarte, Natalie C.;
Palsson, Bernhard Ø.;
Pengcheng Fu

Publication type:

Article

Enhancer trapping in zebrafish using the Sleeping Beauty transposon.

Published in:

BMC Genomics, 2004, v. 5, p. 1, doi. 10.1186/1471-2164-5-62

By:

Balciunas, Darius;
Davidson, Ann E.;
Sivasubbu, Sridhar;
Hermanson, Spencer B.;
Welle, Zachary;
Ekker, Stephen C.

Publication type:

Article

Performance evaluation of commercial short-oligonucleotide microarrays and the impact of noise in making cross-platform correlations.

Published in:

BMC Genomics, 2004, v. 5, p. 61, doi. 10.1186/1471-2164-5-61

By:

Shippy, Richard;
Sendera, Timothy J.;
Lockner, Randall;
Palaniappan, Chockalingam;
Kaysser-Kranich, Tamma;
Watts, George;
Alsobrook, John

Publication type:

Article

POSA: Perl Objects for DNA Sequencing Data Analysis.

Published in:

BMC Genomics, 2004, v. 5, p. 60, doi. 10.1186/1471-2164-5-60

By:

Aerts, Jan A.;
Jungerius, Bart J.;
Groenen, Martien A. M.

Publication type:

Article

Cross-species global and subset gene expression profiling identifies genes involved in prostate cancer response to selenium.

Published in:

BMC Genomics, 2004, v. 5, p. 58, doi. 10.1186/1471-2164-5-58

By:

Schlicht, Michael;
Matysiak, Brian;
Brodzeller, Tracy;
Xinyu Wen;
Hang Liu;
Guohui Zhou;
Dhir, Rajiv;
Hessner, Martin J.;
Tonellato, Peter;
Suckow, Mark;
Pollard, Morris;
Datta, Milton W.

Publication type:

Article

Combined analysis of expression data and transcription factor binding sites in the yeast genome.

Published in:

BMC Genomics, 2004, v. 5, p. 59, doi. 10.1186/1471-2164-5-59

By:

Nagaraj, Vijayalakshmi H.;
O'Flanagan, Ruadhan A.;
Bruning, Adrian R.;
Mathias, Jonathan R.;
Vershon, Andrew K.;
Sengupta, Anirvan M.

Publication type:

Article

A genome-wide screen identifies a single β-defensin gene cluster in the chicken: implications for the origin and evolution of mammalian defensins.

Published in:

BMC Genomics, 2004, v. 5, p. 56, doi. 10.1186/1471-2164-5-56

By:

Yanjing Xiao;
Hughes, Austin L.;
Junko Ando;
Matsuda, Yoichi;
Jan-Fang Cheng;
Skinner-Noble, Donald;
Guolong Zhang

Publication type:

Article

Gene expression variation between mouse inbred strains.

Published in:

BMC Genomics, 2004, v. 5, p. 57, doi. 10.1186/1471-2164-5-57

By:

Turk, Rolf;
AC 't Hoen, Peter;
Sterrenburg, Ellen;
De Menezes, Renée X.;
De Meijer, Emile J.;
Boer, Judith M.;
Van Ommen, Gert-Jan B.;
Den Dunnen, Johan T.

Publication type:

Article

Retrieving sequences of enzymes experimentally characterized but erroneously annotated : the case of the putrescine carbamoyltransferase.

Published in:

BMC Genomics, 2004, v. 5, p. 52, doi. 10.1186/1471-2164-5-52

By:

Naumoff, Daniil G.;
Ying Xu;
Glansdorff, Nicolas;
Labedan, Bernard

Publication type:

Article

The Retinome -- Defining a reference transcriptome of the adult mammalian retina/retinal pigment epithelium.

Published in:

BMC Genomics, 2004, v. 5, p. 50, doi. 10.1186/1471-2164-5-50

By:

Schulz, Heidi L.;
Goetz, Thomas;
Kaschkoetoe, Juergen;
Weber, Bernhard H. F.

Publication type:

Article