Works matching IS 14712105 AND DT 2022 AND VI 23 AND IP 1

Results: 567

The maximum entropy principle for compositional data.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05007-z

By:

Weistuch, Corey;
Zhu, Jiening;
Deasy, Joseph O.;
Tannenbaum, Allen R.

Publication type:

Article

Frugal alignment-free identification of FLT3-internal tandem duplications with FiLT3r.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04983-6

By:

Boudry, Augustin;
Darmon, Sasha;
Duployez, Nicolas;
Figeac, Martin;
Geffroy, Sandrine;
Bucci, Maxime;
Celli-Lebras, Karine;
Duchmann, Matthieu;
Joudinaud, Romane;
Fenwarth, Laurène;
Nibourel, Olivier;
Goursaud, Laure;
Itzykson, Raphael;
Dombret, Hervé;
Hunault, Mathilde;
Preudhomme, Claude;
Salson, Mikaël

Publication type:

Article

Effectively predicting HIV-1 protease cleavage sites by using an ensemble learning approach.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04999-y

By:

Hu, Lun;
Li, Zhenfeng;
Tang, Zehai;
Zhao, Cheng;
Zhou, Xi;
Hu, Pengwei

Publication type:

Article

PreAcrs: a machine learning framework for identifying anti-CRISPR proteins.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04986-3

By:

Zhu, Lin;
Wang, Xiaoyu;
Li, Fuyi;
Song, Jiangning

Publication type:

Article

SumStatsRehab: an efficient algorithm for GWAS summary statistics assessment and restoration.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04920-7

By:

Matushyn, Mykyta;
Bose, Madhuchanda;
Mahmoud, Abdallah Amr;
Cuthbertson, Lewis;
Tello, Carlos;
Bircan, Karatuğ Ozan;
Terpolovsky, Andrew;
Bamunusinghe, Varuna;
Khan, Umar;
Novković, Biljana;
Grabherr, Manfred G.;
Yazdi, Puya G.

Publication type:

Article

PolyHaplotyper: haplotyping in polyploids based on bi-allelic marker dosage data.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04989-0

By:

Voorrips, Roeland E.;
Tumino, Giorgio

Publication type:

Article

CLIN_SKAT: an R package to conduct association analysis using functionally relevant variants.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04987-2

By:

Chattopadhyay, Amrita;
Shih, Ching-Yu;
Hsu, Yu-Chen;
Juang, Jyh-Ming Jimmy;
Chuang, Eric Y.;
Lu, Tzu-Pin

Publication type:

Article

Hierarchical representation for PPI sites prediction.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04624-y

By:

Quadrini, Michela;
Daberdaku, Sebastian;
Ferrari, Carlo

Publication type:

Article

Prediction of liquid–liquid phase separating proteins using machine learning.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04599-w

By:

Chu, Xiaoquan;
Sun, Tanlin;
Li, Qian;
Xu, Youjun;
Zhang, Zhuqing;
Lai, Luhua;
Pei, Jianfeng

Publication type:

Article

D3PM: a comprehensive database for protein motions ranging from residue to domain.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04595-0

By:

Peng, Cheng;
Zhang, Xinben;
Xu, Zhijian;
Chen, Zhaoqiang;
Yang, Yanqing;
Cai, Tingting;
Zhu, Weiliang

Publication type:

Article

PΨFinder: a practical tool for the identification and visualization of novel pseudogenes in DNA sequencing data.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04583-4

By:

Abrahamsson, Sanna;
Eiengård, Frida;
Rohlin, Anna;
Dávila López, Marcela

Publication type:

Article

Topology preserving stratification of tissue neoplasticity using Deep Neural Maps and microRNA signatures.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04559-4

By:

Kaczmarek, Emily;
Nanayakkara, Jina;
Sedghi, Alireza;
Pesteie, Mehran;
Tuschl, Thomas;
Renwick, Neil;
Mousavi, Parvin

Publication type:

Article

On Bayesian modeling of censored data in JAGS.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-021-04496-8

By:

Qi, Xinyue;
Zhou, Shouhao;
Plummer, Martyn

Publication type:

Article

SpotitPy: a semi-automated tool for object-based co-localization of fluorescent labels in microscopy images.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04988-1

By:

Akalestou-Clocher, Alexia;
Kalamara, Vivian;
Topalis, Pantelis;
Garinis, George A.

Publication type:

Article

Prognostic risk assessment model and drug sensitivity analysis of colon adenocarcinoma (COAD) based on immune-related lncRNA pairs.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04969-4

By:

Hao, Zezhou;
Liang, Pengchen;
He, Changyu;
Sha, Shuang;
Yang, Ziyuan;
Liu, Yixin;
Shi, Junfeng;
Zhu, Zhenggang;
Chang, Qing

Publication type:

Article

Multi-objective data enhancement for deep learning-based ultrasound analysis.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04985-4

By:

Piao, Chengkai;
Lv, Mengyue;
Wang, Shujie;
Zhou, Rongyan;
Wang, Yuchen;
Wei, Jinmao;
Liu, Jian

Publication type:

Article

Study on the prognosis, immune and drug resistance of m6A-related genes in lung cancer.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04984-5

By:

Yang, Yang;
Qian, Zhouyao;
Feng, Mingyang;
Liao, Weiting;
Wu, Qiuji;
Wen, Feng;
Li, Qiu

Publication type:

Article

Estimating the optimal linear combination of predictors using spherically constrained optimization.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04953-y

By:

Das, Priyam;
De, Debsurya;
Maiti, Raju;
Kamal, Mona;
Hutcheson, Katherine A.;
Fuller, Clifton D.;
Chakraborty, Bibhas;
Peterson, Christine B.

Publication type:

Article

Identification of miRNA biomarkers for breast cancer by combining ensemble regularized multinomial logistic regression and Cox regression.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04982-7

By:

Li, Juntao;
Zhang, Hongmei;
Gao, Fugen

Publication type:

Article

Single object profiles regression analysis (SOPRA): a novel method for analyzing high-content cell-based screens.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04981-8

By:

Gurumurthy, Rajendra Kumar;
Pleissner, Klaus-Peter;
Chumduri, Cindrilla;
Meyer, Thomas F.;
Mäurer, André P.

Publication type:

Article

Deep learning approach for cancer subtype classification using high-dimensional gene expression data.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04980-9

By:

Shen, Jiquan;
Shi, Jiawei;
Luo, Junwei;
Zhai, Haixia;
Liu, Xiaoyan;
Wu, Zhengjiang;
Yan, Chaokun;
Luo, Huimin

Publication type:

Article

Clinical applications of machine learning in predicting 3D shapes of the human body: a systematic review.

Published in:

2022

By:

Wang, Joyce Zhanzi;
Lillia, Jonathon;
Kumar, Ashnil;
Bray, Paula;
Kim, Jinman;
Burns, Joshua;
Cheng, Tegan L.

Publication type:

Literature Review

Predicting potential miRNA-disease associations based on more reliable negative sample selection.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04978-3

By:

Guo, Ruiyu;
Chen, Hailin;
Wang, Wengang;
Wu, Guangsheng;
Lv, Fangliang

Publication type:

Article

BRANEnet: embedding multilayer networks for omics data integration.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04955-w

By:

Jagtap, Surabhi;
Pirayre, Aurélie;
Bidard, Frédérique;
Duval, Laurent;
Malliaros, Fragkiskos D.

Publication type:

Article

MSPCD: predicting circRNA-disease associations via integrating multi-source data and hierarchical neural network.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04976-5

By:

Deng, Lei;
Liu, Dayun;
Li, Yizhan;
Wang, Runqi;
Liu, Junyi;
Zhang, Jiaxuan;
Liu, Hui

Publication type:

Article

DeepMPM: a mortality risk prediction model using longitudinal EHR data.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04975-6

By:

Yang, Fan;
Zhang, Jian;
Chen, Wanyi;
Lai, Yongxuan;
Wang, Ying;
Zou, Quan

Publication type:

Article

PrimedSherlock: a tool for rapid design of highly specific CRISPR-Cas12 crRNAs.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04968-5

By:

Mann, James G.;
Pitts, R. Jason

Publication type:

Article

A risk factor attention-based model for cardiovascular disease prediction.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04963-w

By:

Qiu, Yanlong;
Wang, Wei;
Wu, Chengkun;
Zhang, Zhichang

Publication type:

Article

A novel candidate disease gene prioritization method using deep graph convolutional networks and semi-supervised learning.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04954-x

By:

Azadifar, Saeid;
Ahmadi, Ali

Publication type:

Article

IndelsRNAmute: predicting deleterious multiple point substitutions and indels mutations.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04943-0

By:

Churkin, Alexander;
Ponty, Yann;
Barash, Danny

Publication type:

Article

DENSEN: a convolutional neural network for estimating chronological ages from panoramic radiographs.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04935-0

By:

Wang, Xuedong;
Liu, Yanle;
Miao, Xinyao;
Chen, Yin;
Cao, Xiao;
Zhang, Yuchen;
Li, Shuaicheng;
Zhou, Qin

Publication type:

Article

Estimating the effect size of a hidden causal factor between SNPs and a continuous trait: a mediation model approach.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04977-4

By:

Ding, Zhuoran;
Ritchie, Marylyn D.;
Voight, Benjamin F.;
Hwang, Wei-Ting

Publication type:

Article

A joint use of pooling and imputation for genotyping SNPs.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04974-7

By:

Clouard, Camille;
Ausmees, Kristiina;
Nettelblad, Carl

Publication type:

Article

VEBA: a modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04973-8

By:

Espinoza, Josh L.;
Dupont, Chris L.

Publication type:

Article

Deep learning algorithm reveals two prognostic subtypes in patients with gliomas.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04970-x

By:

Tian, Jing;
Zhu, Mingzhen;
Ren, Zijing;
Zhao, Qiang;
Wang, Puqing;
He, Colin K.;
Zhang, Min;
Peng, Xiaochun;
Wu, Beilei;
Feng, Rujia;
Fu, Minglong

Publication type:

Article

Novel six-gene prognostic signature based on colon adenocarcinoma immune-related genes.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04909-2

By:

Zhou, Rui;
Gao, Zhuowei;
Ju, Yongle

Publication type:

Article

A graph-based approach for the visualisation and analysis of bacterial pangenomes.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04898-2

By:

Harling-Lee, Joshua D.;
Gorzynski, Jamie;
Yebra, Gonzalo;
Angus, Tim;
Fitzgerald, J. Ross;
Freeman, Tom C.

Publication type:

Article

Comparative transcriptomics analysis pipeline for the meta-analysis of phylogenetically divergent datasets (CoRMAP).

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04972-9

By:

Sheng, Yiru;
Ali, R. Ayesha;
Heyland, Andreas

Publication type:

Article

Detecting protein complexes with multiple properties by an adaptive harmony search algorithm.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04923-4

By:

Wang, Rongquan;
Wang, Caixia;
Ma, Huimin

Publication type:

Article

EnsembleSplice: ensemble deep learning model for splice site prediction.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04971-w

By:

Akpokiro, Victor;
Martin, Trevor;
Oluwadare, Oluwatosin

Publication type:

Article

Oxidative stress genes in patients with esophageal squamous cell carcinoma: construction of a novel prognostic signature and characterization of tumor microenvironment infiltration.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04956-9

By:

Liu, Wei;
Yang, Hao-Shuai;
Zheng, Shao-Yi;
Luo, Hong-He;
Feng, Yan-Fen;
Lei, Yi-Yan

Publication type:

Article

Benchmark study of feature selection strategies for multi-omics data.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04962-x

By:

Li, Yingxia;
Mansmann, Ulrich;
Du, Shangming;
Hornung, Roman

Publication type:

Article

Small protein complex prediction algorithm based on protein–protein interaction network segmentation.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04960-z

By:

Lyu, Jiaqing;
Yao, Zhen;
Liang, Bing;
Liu, Yiwei;
Zhang, Yijia

Publication type:

Article

A machine learning-based data mining in medical examination data: a biological features-based biological age prediction model.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04966-7

By:

Yang, Qing;
Gao, Sunan;
Lin, Junfen;
Lyu, Ke;
Wu, Zexu;
Chen, Yuhao;
Qiu, Yinwei;
Zhao, Yanrong;
Wang, Wei;
Lin, Tianxiang;
Pan, Huiyun;
Chen, Ming

Publication type:

Article

Visualizing the knowledge structure and evolution of bioinformatics.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04948-9

By:

Wang, Jiaqi;
Li, Zeyu;
Zhang, Jiawan

Publication type:

Article

Implementation of machine learning in the clinic: challenges and lessons in prospective deployment from the System for High Intensity EvaLuation During Radiation Therapy (SHIELD-RT) randomized controlled study.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04940-3

By:

Hong, Julian C.;
Eclov, Neville C. W.;
Stephens, Sarah J.;
Mowery, Yvonne M.;
Palta, Manisha

Publication type:

Article

Deep multiview learning to identify imaging-driven subtypes in mild cognitive impairment.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04946-x

By:

Feng, Yixue;
Kim, Mansu;
Yao, Xiaohui;
Liu, Kefei;
Long, Qi;
Shen, Li

Publication type:

Article

Small molecule modulation of microbiota: a systems pharmacology perspective.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04941-2

By:

Liu, Qiao;
Lee, Bohyun;
Xie, Lei

Publication type:

Article

RTX-KG2: a system for building a semantically standardized knowledge graph for translational biomedicine.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04932-3

By:

Wood, E. C.;
Glen, Amy K.;
Kvarfordt, Lindsey G.;
Womack, Finn;
Acevedo, Liliana;
Yoon, Timothy S.;
Ma, Chunyu;
Flores, Veronica;
Sinha, Meghamala;
Chodpathumwan, Yodsawalai;
Termehchy, Arash;
Roach, Jared C.;
Mendoza, Luis;
Hoffman, Andrew S.;
Deutsch, Eric W.;
Koslicki, David;
Ramsey, Stephen A.

Publication type:

Article

Genomic data integration and user-defined sample-set extraction for population variant analysis.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04927-0

By:

Alfonsi, Tommaso;
Bernasconi, Anna;
Canakoglu, Arif;
Masseroli, Marco

Publication type:

Article