Works matching IS 14712105 AND DT 2022 AND VI 23 AND IP 1

Results: 567

PhenoExam: gene set analyses through integration of different phenotype databases.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05122-x

By:

Cisterna, Alejandro;
González-Vidal, Aurora;
Ruiz, Daniel;
Ortiz, Jordi;
Gómez-Pascual, Alicia;
Chen, Zhongbo;
Nalls, Mike;
Faghri, Faraz;
Hardy, John;
Díez, Irene;
Maietta, Paolo;
Álvarez, Sara;
Ryten, Mina;
Botía, Juan A.

Publication type:

Article

Nonlinear physics opens a new paradigm for accurate transcription start site prediction.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05129-4

By:

Barbero-Aparicio, José Antonio;
Cuesta-Lopez, Santiago;
García-Osorio, César Ignacio;
Pérez-Rodríguez, Javier;
García-Pedrajas, Nicolás

Publication type:

Article

High-quality genome-scale metabolic network reconstruction of probiotic bacterium Escherichia coli Nissle 1917.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05108-9

By:

van 't Hof, Max;
Mohite, Omkar S.;
Monk, Jonathan M.;
Weber, Tilmann;
Palsson, Bernhard O.;
Sommer, Morten O. A.

Publication type:

Article

Graph regularized non-negative matrix factorization with prior knowledge consistency constraint for drug–target interactions prediction.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05119-6

By:

Zhang, Junjun;
Xie, Minzhu

Publication type:

Article

StackCirRNAPred: computational classification of long circRNA from other lncRNA based on stacking strategy.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05118-7

By:

Wang, Xin;
Liu, Yadong;
Li, Jie;
Wang, Guohua

Publication type:

Article

Correction: DENSEN: a convolutional neural network for estimating chronological ages from panoramic radiographs.

Published in:

2022

By:

Wang, Xuedong;
Liu, Yanle;
Miao, Xinyao;
Chen, Yin;
Cao, Xiao;
Zhang, Yuchen;
Li, Shuaicheng;
Zhou, Qin

Publication type:

Correction Notice

Digital surveillance in Latin American diseases outbreaks: information extraction from a novel Spanish corpus.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05094-y

By:

Dellanzo, Antonella;
Cotik, Viviana;
Lozano Barriga, Daniel Yunior;
Mollapaza Apaza, Jonathan Jimmy;
Palomino, Daniel;
Schiaffino, Fernando;
Yanque Aliaga, Alexander;
Ochoa-Luna, José

Publication type:

Article

Small molecule drug and biotech drug interaction prediction based on multi-modal representation learning.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05101-2

By:

Huang, Dingkai;
He, Hongjian;
Ouyang, Jiaming;
Zhao, Chang;
Dong, Xin;
Xie, Jiang

Publication type:

Article

Deciphering the role of RNA structure in translation efficiency.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05037-7

By:

Lin, Jianan;
Chen, Yang;
Zhang, Yuping;
Lin, Haifan;
Ouyang, Zhengqing

Publication type:

Article

GCNCPR-ACPs: a novel graph convolution network method for ACPs prediction.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04771-2

By:

Wu, Xiujin;
Zeng, Wenhua;
Lin, Fan

Publication type:

Article

A novel glycosylation-related gene signature predicts survival in patients with lung adenocarcinoma.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05109-8

By:

Liang, Jin-xiao;
Chen, Qian;
Gao, Wei;
Chen, Da;
Qian, Xin-yu;
Bi, Jin-qiao;
Lin, Xing-chen;
Han, Bing-bing;
Liu, Jin-shi

Publication type:

Article

MR-KPA: medication recommendation by combining knowledge-enhanced pre-training with a deep adversarial network.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05102-1

By:

Lin, Shaofu;
Wang, Mengzhen;
Shi, Chengyu;
Xu, Zhe;
Chen, Lihong;
Gao, Qingcai;
Chen, Jianhui

Publication type:

Article

UGDR: a generic pipeline to detect recombined regions in polyploid and complex hybrid yeast genomes.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05113-y

By:

Bedrat, Amina

Publication type:

Article

HEC-ASD: a hybrid ensemble-based classification model for predicting autism spectrum disorder disease genes.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05099-7

By:

Ismail, Eman;
Gad, Walaa;
Hashem, Mohamed

Publication type:

Article

An improved algorithm for flux variability analysis.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05089-9

By:

Kenefake, Dustin;
Armingol, Erick;
Lewis, Nathan E.;
Pistikopoulos, Efstratios N.

Publication type:

Article

Unsupervised outlier detection applied to SARS-CoV-2 nucleotide sequences can identify sequences of common variants and other variants of interest.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05105-y

By:

Hahn, Georg;
Lee, Sanghun;
Prokopenko, Dmitry;
Abraham, Jonathan;
Novak, Tanya;
Hecker, Julian;
Cho, Michael;
Khurana, Surender;
Baden, Lindsey R.;
Randolph, Adrienne G.;
Weiss, Scott T.;
Lange, Christoph

Publication type:

Article

Symptoms are known by their companies: towards association guided disease diagnosis assistant.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05032-y

By:

Tiwari, Abhisek;
Saha, Tulika;
Saha, Sriparna;
Bhattacharyya, Pushpak;
Begum, Shemim;
Dhar, Minakshi;
Tiwari, Sarbajeet

Publication type:

Article

VirPool: model-based estimation of SARS-CoV-2 variant proportions in wastewater samples.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05100-3

By:

Gafurov, Askar;
Baláž, Andrej;
Amman, Fabian;
Boršová, Kristína;
Čabanová, Viktória;
Klempa, Boris;
Bergthaler, Andreas;
Vinař, Tomáš;
Brejová, Broňa

Publication type:

Article

MR-KPA: medication recommendation by combining knowledge-enhanced pre-training with a deep adversarial network.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05102-1

By:

Lin, Shaofu;
Wang, Mengzhen;
Shi, Chengyu;
Xu, Zhe;
Chen, Lihong;
Gao, Qingcai;
Chen, Jianhui

Publication type:

Article

Joint learning sample similarity and correlation representation for cancer survival prediction.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05110-1

By:

Hao, Yaru;
Jing, Xiao-Yuan;
Sun, Qixing

Publication type:

Article

VANet: a medical image fusion model based on attention mechanism to assist disease diagnosis.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05072-4

By:

Guo, Kai;
Li, Xiongfei;
Fan, Tiehu;
Hu, Xiaohan

Publication type:

Article

Joint learning sample similarity and correlation representation for cancer survival prediction.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05110-1

By:

Hao, Yaru;
Jing, Xiao-Yuan;
Sun, Qixing

Publication type:

Article

Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05103-0

By:

Portik, Daniel M.;
Brown, C. Titus;
Pierce-Ward, N. Tessa

Publication type:

Article

JCBIE: a joint continual learning neural network for biomedical information extraction.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05096-w

By:

He, Kai;
Mao, Rui;
Gong, Tieliang;
Cambria, Erik;
Li, Chen

Publication type:

Article

VirPool: model-based estimation of SARS-CoV-2 variant proportions in wastewater samples.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05100-3

By:

Gafurov, Askar;
Baláž, Andrej;
Amman, Fabian;
Boršová, Kristína;
Čabanová, Viktória;
Klempa, Boris;
Bergthaler, Andreas;
Vinař, Tomáš;
Brejová, Broňa

Publication type:

Article

An improved algorithm for flux variability analysis.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05089-9

By:

Kenefake, Dustin;
Armingol, Erick;
Lewis, Nathan E.;
Pistikopoulos, Efstratios N.

Publication type:

Article

Improved compound–protein interaction site and binding affinity prediction using self-supervised protein embeddings.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05107-w

By:

Wu, Jialin;
Liu, Zhe;
Yang, Xiaofeng;
Lin, Zhanglin

Publication type:

Article

Unsupervised outlier detection applied to SARS-CoV-2 nucleotide sequences can identify sequences of common variants and other variants of interest.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05105-y

By:

Hahn, Georg;
Lee, Sanghun;
Prokopenko, Dmitry;
Abraham, Jonathan;
Novak, Tanya;
Hecker, Julian;
Cho, Michael;
Khurana, Surender;
Baden, Lindsey R.;
Randolph, Adrienne G.;
Weiss, Scott T.;
Lange, Christoph

Publication type:

Article

AtlasGrabber: a software facilitating the high throughput analysis of the human protein atlas online database.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05097-9

By:

Bozoky, Benedek;
Szekely, Laszlo;
Ernberg, Ingemar;
Savchenko, Andrii

Publication type:

Article

Detecting clusters of transcription factors based on a nonhomogeneous poisson process model.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05090-2

By:

Wu, Xiaowei;
Liu, Shicheng;
Liang, Guanying

Publication type:

Article

JCBIE: a joint continual learning neural network for biomedical information extraction.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05096-w

By:

He, Kai;
Mao, Rui;
Gong, Tieliang;
Cambria, Erik;
Li, Chen

Publication type:

Article

Pro-MAP: a robust pipeline for the pre-processing of single channel protein microarray data.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05095-x

By:

Mowoe, Metoboroghene Oluwaseyi;
Garnett, Shaun;
Lennard, Katherine;
Talbot, Jade;
Townsend, Paul;
Jonas, Eduard;
Blackburn, Jonathan Michael

Publication type:

Article

VANet: a medical image fusion model based on attention mechanism to assist disease diagnosis.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05072-4

By:

Guo, Kai;
Li, Xiongfei;
Fan, Tiehu;
Hu, Xiaohan

Publication type:

Article

NPGREAT: assembly of human subtelomere regions with the use of ultralong nanopore reads and linked-reads.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05081-3

By:

Adam, Eleni;
Ranjan, Desh;
Riethman, Harold

Publication type:

Article

Improving automatic GO annotation with semantic similarity.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04958-7

By:

Sarker, Bishnu;
Khare, Navya;
Devignes, Marie-Dominique;
Aridhi, Sabeur

Publication type:

Article

Profiling the BLAST bioinformatics application for load balancing on high-performance computing clusters.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05029-7

By:

Cheng, Trinity;
Chin, Pei-Ju;
Cha, Kenny;
Petrick, Nicholas;
Mikailov, Mike

Publication type:

Article

Development of an image classification pipeline for atherosclerotic plaques assessment using supervised machine learning.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05059-1

By:

Kunchur, Natasha N.;
Mostaço-Guidolin, Leila B.

Publication type:

Article

Graph4Med: a web application and a graph database for visualizing and analyzing medical databases.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05092-0

By:

Schäfer, Jero;
Tang, Ming;
Luu, Danny;
Bergmann, Anke Katharina;
Wiese, Lena

Publication type:

Article

SC3s: efficient scaling of single cell consensus clustering to millions of cells.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05085-z

By:

Quah, Fu Xiang;
Hemberg, Martin

Publication type:

Article

DeepTSS: multi-branch convolutional neural network for transcription start site identification from CAGE data.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04945-y

By:

Grigoriadis, Dimitris;
Perdikopanis, Nikos;
Georgakilas, Georgios K.;
Hatzigeorgiou, Artemis G.

Publication type:

Article

Boosting tissue-specific prediction of active cis-regulatory regions through deep learning and Bayesian optimization techniques.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04582-5

By:

Cappelletti, Luca;
Petrini, Alessandro;
Gliozzo, Jessica;
Casiraghi, Elena;
Schubach, Max;
Kircher, Martin;
Valentini, Giorgio

Publication type:

Article

DiviK: divisive intelligent K-means for hands-free unsupervised clustering in big biological data.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05093-z

By:

Mrukwa, Grzegorz;
Polanska, Joanna

Publication type:

Article

Drug response prediction using graph representation learning and Laplacian feature selection.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05080-4

By:

Xie, Minzhu;
Lei, Xiaowen;
Zhong, Jianchen;
Ouyang, Jianxing;
Li, Guijing

Publication type:

Article

EasySMPC: a simple but powerful no-code tool for practical secure multiparty computation.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05044-8

By:

Wirth, Felix Nikolaus;
Kussel, Tobias;
Müller, Armin;
Hamacher, Kay;
Prasser, Fabian

Publication type:

Article

Publisher Correction: Frugal alignment-free identification of FLT3-internal tandem duplications with FiLT3r.

Published in:

2022

By:

Boudry, Augustin;
Darmon, Sasha;
Duployez, Nicolas;
Figeac, Martin;
Geffroy, Sandrine;
Bucci, Maxime;
Celli-Lebras, Karine;
Duchmann, Matthieu;
Joudinaud, Romane;
Fenwarth, Laurène;
Nibourel, Olivier;
Goursaud, Laure;
Itzykson, Raphael;
Dombret, Hervé;
Hunault, Mathilde;
Preudhomme, Claude;
Salson, Mikaël

Publication type:

Correction Notice

Frugal alignment-free identification of FLT3-internal tandem duplications with FiLT3r.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05079-x

By:

Boudry, Augustin;
Darmon, Sasha;
Duployez, Nicolas;
Figeac, Martin;
Geffroy, Sandrine;
Bucci, Maxime;
Celli-Lebras, Karine;
Duchmann, Matthieu;
Joudinaud, Romane;
Fenwarth, Laurène;
Nibourel, Olivier;
Goursaud, Laure;
Itzykson, Raphael;
Dombret, Hervé;
Hunault, Mathilde;
Preudhomme, Claude;
Salson, Mikaël

Publication type:

Article

Establishment and validation of a predictive model of preeclampsia based on transcriptional signatures of 43 genes in decidua basalis and peripheral blood.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05086-y

By:

Zhang, Hongya;
Li, Xuexiang;
Zhang, Tianying;
Zhou, Qianhui;
Zhang, Cong

Publication type:

Article

Predicting drug characteristics using biomedical text embedding.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05083-1

By:

Shtar, Guy;
Greenstein-Messica, Asnat;
Mazuz, Eyal;
Rokach, Lior;
Shapira, Bracha

Publication type:

Article

Long-distance dependency combined multi-hop graph neural networks for protein–protein interactions prediction.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05062-6

By:

Zhong, Wen;
He, Changxiang;
Xiao, Chen;
Liu, Yuru;
Qin, Xiaofei;
Yu, Zhensheng

Publication type:

Article

robustica: customizable robust independent component analysis.

Published in:

BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-05043-9

By:

Anglada-Girotto, Miquel;
Miravet-Verde, Samuel;
Serrano, Luis;
Head, Sarah A.

Publication type:

Article