Works matching IS 14712105 AND DT 2020 AND VI 21 AND IP 1

Results: 436

Improving biomedical named entity recognition with syntactic information.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03834-6

By:

Tian, Yuanhe;
Shen, Wang;
Song, Yan;
Xia, Fei;
He, Min;
Li, Kenli

Publication type:

Article

Mixed logistic regression in genome-wide association studies.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03862-2

By:

Milet, Jacqueline;
Courtin, David;
Garcia, André;
Perdry, Hervé

Publication type:

Article

MADloy: robust detection of mosaic loss of chromosome Y from genotype-array-intensity data.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03768-z

By:

González, Juan R.;
López-Sánchez, Marcos;
Cáceres, Alejandro;
Puig, Pere;
Esko, Tonu;
Pérez-Jurado, Luis A.

Publication type:

Article

The MOBSTER R package for tumour subclonal deconvolution from bulk DNA whole-genome sequencing data.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03863-1

By:

Caravagna, Giulio;
Sanguinetti, Guido;
Graham, Trevor A.;
Sottoriva, Andrea

Publication type:

Article

LC-N2G: a local consistency approach for nutrigenomics data analysis.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03861-3

By:

Xu, Xiangnan;
Solon-Biet, Samantha M.;
Senior, Alistair;
Raubenheimer, David;
Simpson, Stephen J.;
Fontana, Luigi;
Mueller, Samuel;
Yang, Jean Y. H.

Publication type:

Article

A computational diffusion model to study antibody transport within reconstructed tumor microenvironments.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03854-2

By:

Cartaxo, Ana Luísa;
Almeida, Jaime;
Gualda, Emilio J.;
Marsal, Maria;
Loza-Alvarez, Pablo;
Brito, Catarina;
Isidro, Inês A.

Publication type:

Article

Clover: a clustering-oriented de novo assembler for Illumina sequences.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03788-9

By:

Hsieh, Ming-Feng;
Lu, Chin Lung;
Tang, Chuan Yi

Publication type:

Article

Latent class distributional regression for the estimation of non-linear reference limits from contaminated data sources.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03853-3

By:

Hepp, Tobias;
Zierk, Jakob;
Rauh, Manfred;
Metzler, Markus;
Mayr, Andreas

Publication type:

Article

Natrix: a Snakemake-based workflow for processing, clustering, and taxonomically assigning amplicon sequencing reads.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03852-4

By:

Welzel, Marius;
Lange, Anja;
Heider, Dominik;
Schwarz, Michael;
Freisleben, Bernd;
Jensen, Manfred;
Boenigk, Jens;
Beisser, Daniela

Publication type:

Article

Stability and bifurcations in a discrete-time epidemic model with vaccination and vital dynamics.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03839-1

By:

Parsamanesh, Mahmood;
Erfanian, Majid;
Mehrshad, Saeed

Publication type:

Article

Latent class distributional regression for the estimation of non-linear reference limits from contaminated data sources.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-03853-3

By:

Hepp, Tobias;
Zierk, Jakob;
Rauh, Manfred;
Metzler, Markus;
Mayr, Andreas

Publication type:

Article

Deep learning based DNA:RNA triplex forming potential prediction.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-03864-0

By:

Zhang, Yu;
Long, Yahui;
Kwoh, Chee Keong

Publication type:

Article

SCELLECTOR: ranking amplification bias in single cells using shallow sequencing.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-03858-y

By:

Sarangi, Vivekananda;
Jourdon, Alexandre;
Bae, Taejeong;
Panda, Arijit;
Vaccarino, Flora;
Abyzov, Alexej

Publication type:

Article

Quantitative Structure–Mutation–Activity Relationship Tests (QSMART) model for protein kinase inhibitor response prediction.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-03842-6

By:

Huang, Liang-Chin;
Yeung, Wayland;
Wang, Ye;
Cheng, Huimin;
Venkat, Aarya;
Li, Sheng;
Ma, Ping;
Rasheed, Khaled;
Kannan, Natarajan

Publication type:

Article

DeepciRGO: functional prediction of circular RNAs through hierarchical deep neural networks using heterogeneous network features.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-03748-3

By:

Deng, Lei;
Lin, Wei;
Wang, Jiacheng;
Zhang, Jingpu

Publication type:

Article

Avian Immunome DB: an example of a user-friendly interface for extracting genetic information.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03764-3

By:

Mueller, Ralf C.;
Mallig, Nicolai;
Smith, Jacqueline;
Eöery, Lél;
Kuo, Richard I.;
Kraus, Robert H. S.

Publication type:

Article

Performance of copy number variants detection based on whole-genome sequencing by DNBSEQ platforms.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03859-x

By:

Rao, Junhua;
Peng, Lihua;
Liang, Xinming;
Jiang, Hui;
Geng, Chunyu;
Zhao, Xia;
Liu, Xin;
Fan, Guangyi;
Chen, Fang;
Mu, Feng

Publication type:

Article

High quality genome assemblies of Mycoplasma bovis using a taxon-specific Bonito basecaller for MinION and Flongle long-read nanopore sequencing.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03856-0

By:

Vereecke, Nick;
Bokma, Jade;
Haesebrouck, Freddy;
Nauwynck, Hans;
Boyen, Filip;
Pardon, Bart;
Theuns, Sebastiaan

Publication type:

Article

Achieving large and distant ancestral genome inference by using an improved discrete quantum-behaved particle swarm optimization algorithm.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03833-7

By:

Zhang, Zhaojuan;
Wang, Wanliang;
Xia, Ruofan;
Pan, Gaofeng;
Wang, Jiandong;
Tang, Jijun

Publication type:

Article

Novel domain expansion methods to improve the computational efficiency of the Chemical Master Equation solution for large biological networks.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03668-2

By:

Kosarwal, Rahul;
Kulasiri, Don;
Samarasinghe, Sandhya

Publication type:

Article

Understanding the causes of errors in eukaryotic protein-coding gene prediction: a case study of primate proteomes.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-03855-1

By:

Meyer, Corentin;
Scalzitti, Nicolas;
Jeannin-Girardon, Anne;
Collet, Pierre;
Poch, Olivier;
Thompson, Julie D.

Publication type:

Article

A sequence embedding method for enzyme optimal condition analysis.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03851-5

By:

Li, Xiangjun;
Dou, Zhixin;
Sun, Yuqing;
Wang, Lushan;
Gong, Bin;
Wan, Lin

Publication type:

Article

Speeding up the core algorithm for the dual calculation of minimal cut sets in large metabolic networks.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03837-3

By:

Klamt, Steffen;
Mahadevan, Radhakrishnan;
von Kamp, Axel

Publication type:

Article

Inferring chromosome radial organization from Hi-C data.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03841-7

By:

Das, Priyojit;
Shen, Tongye;
McCord, Rachel Patton

Publication type:

Article

DeepCryoPicker: fully automated deep neural network for single protein particle picking in cryo-EM.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03809-7

By:

Al-Azzawi, Adil;
Ouadou, Anes;
Max, Highsmith;
Duan, Ye;
Tanner, John J.;
Cheng, Jianlin

Publication type:

Article

Prediction of enhancer–promoter interactions using the cross-cell type information and domain adversarial neural network.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-03844-4

By:

Jing, Fang;
Zhang, Shao-Wu;
Zhang, Shihua

Publication type:

Article

Prediction and prioritization of autism-associated long non-coding RNAs using gene expression and sequence features.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-03843-5

By:

Wang, Jun;
Wang, Liangjiang

Publication type:

Article

Identification and utilization of copy number information for correcting Hi-C contact map of cancer cell lines.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-03832-8

By:

Khalil, Ahmed Ibrahim Samir;
Muzaki, Siti Rawaidah Binte Mohammad;
Chattopadhyay, Anupam;
Sanyal, Amartya

Publication type:

Article

ISSEC: inferring contacts among protein secondary structure elements using deep object detection.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03793-y

By:

Zhang, Qi;
Zhu, Jianwei;
Ju, Fusong;
Kong, Lupeng;
Sun, Shiwei;
Zheng, Wei-Mou;
Bu, Dongbo

Publication type:

Article

Biological interpretation of deep neural network for phenotype prediction based on gene expression.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03836-4

By:

Hanczar, Blaise;
Zehraoui, Farida;
Issa, Tina;
Arles, Mathieu

Publication type:

Article

SAlign–a structure aware method for global PPI network alignment.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03827-5

By:

Ayub, Umair;
Haider, Imran;
Naveed, Hammad

Publication type:

Article

Correction to: Clustering analysis of tumor metabolic networks.

Published in:

2020

By:

Manipur, Ichcha;
Granata, Ilaria;
Maddalena, Lucia;
Guarracino, Mario R.

Publication type:

Correction Notice

Correction to: binomialRF: interpretable combinatoric efficiency of random forests to identify biomarker interactions.

Published in:

2020

By:

Zaim, Samir Rachid;
Kenost, Colleen;
Berghout, Joanne;
Chiu, Wesley;
Wilson, Liam;
Zhang, Hao Helen;
Lussier, Yves A.

Publication type:

Correction Notice

Improved cytokine–receptor interaction prediction by exploiting the negative sample space.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03835-5

By:

Nath, Abhigyan;
Leier, André

Publication type:

Article

BIOCOM-PIPE: a new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S and 23S rRNA gene amplicons.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03829-3

By:

Djemiel, Christophe;
Dequiedt, Samuel;
Karimi, Battle;
Cottin, Aurélien;
Girier, Thibault;
El Djoudi, Yassin;
Wincker, Patrick;
Lelièvre, Mélanie;
Mondy, Samuel;
Chemidlin Prévost-Bouré, Nicolas;
Maron, Pierre-Alain;
Ranjard, Lionel;
Terrat, Sébastien

Publication type:

Article

simplePHENOTYPES: SIMulation of pleiotropic, linked and epistatic phenotypes.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03804-y

By:

Fernandes, Samuel B.;
Lipka, Alexander E.

Publication type:

Article

ConCysFind: a pipeline tool to predict conserved amino acids of protein sequences across the plant kingdom.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03749-2

By:

Moore, Marten;
Wesemann, Corinna;
Gossmann, Nikolaj;
Sahm, Arne;
Krüger, Jan;
Sczyrba, Alexander;
Dietz, Karl-Josef

Publication type:

Article

m5CPred-SVM: a novel method for predicting m5C sites of RNA.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03828-4

By:

Chen, Xiao;
Xiong, Yi;
Liu, Yinbo;
Chen, Yuqing;
Bi, Shoudong;
Zhu, Xiaolei

Publication type:

Article

NBZIMM: negative binomial and zero-inflated mixed models, with application to microbiome/metagenomics data analysis.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03803-z

By:

Zhang, Xinyan;
Yi, Nengjun

Publication type:

Article

LAMP: disease classification derived from layered assessment on modules and pathways in the human gene network.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03800-2

By:

Mi, Zhilong;
Guo, Binghui;
Yang, Xiaobo;
Yin, Ziqiao;
Zheng, Zhiming

Publication type:

Article

Feature selection algorithm based on dual correlation filters for cancer-associated somatic variants.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03767-0

By:

Seo, Hyein;
Cho, Dong-Ho

Publication type:

Article

CosinorPy: a python package for cosinor-based rhythmometry.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03830-w

By:

Moškon, Miha

Publication type:

Article

Variable selection from a feature representing protein sequences: a case of classification on bacterial type IV secreted effectors.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-03826-6

By:

Zhang, Jian;
Lv, Lixin;
Lu, Donglei;
Kong, Denan;
Al-Alashaari, Mohammed Abdoh Ali;
Zhao, Xudong

Publication type:

Article

optimalFlow: optimal transport approach to flow cytometry gating and population matching.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-03795-w

By:

del Barrio, Eustasio;
Inouzhe, Hristo;
Loubes, Jean-Michel;
Matrán, Carlos;
Mayo-Íscar, Agustín

Publication type:

Article

Calculating the most likely intron splicing orders in S. pombe, fruit fly, Arabidopsis thaliana, and humans.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03818-6

By:

Li, Meng

Publication type:

Article

A rank-based marker selection method for high throughput scRNA-seq data.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03641-z

By:

Vargo, Alexander H. S.;
Gilbert, Anna C.

Publication type:

Article

PyGNA: a unified framework for geneset network analysis.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03801-1

By:

Fanfani, Viola;
Cassano, Fabio;
Stracquadanio, Giovanni

Publication type:

Article

NCMHap: a novel method for haplotype reconstruction based on Neutrosophic c-means clustering.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03775-0

By:

Zamani, Fatemeh;
Olyaee, Mohammad Hossein;
Khanteymoori, Alireza

Publication type:

Article

NIMBus: a negative binomial regression based Integrative Method for mutation Burden Analysis.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03758-1

By:

Zhang, Jing;
Liu, Jason;
McGillivray, Patrick;
Yi, Caroline;
Lochovsky, Lucas;
Lee, Donghoon;
Gerstein, Mark

Publication type:

Article

A method for estimating coherence of molecular mechanisms in major human disease and traits.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12859-020-03821-x

By:

Dozmorov, Mikhail G.;
Cresswell, Kellen G.;
Bacanu, Silviu-Alin;
Craver, Carl;
Reimers, Mark;
Kendler, Kenneth S.

Publication type:

Article