Works matching IS 14712105 AND DT 2020 AND VI 21

Results: 592

A random forest based computational model for predicting novel lncRNA-disease associations.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3458-1

By:

Yao, Dengju;
Zhan, Xiaojuan;
Zhan, Xiaorong;
Kwoh, Chee Keong;
Li, Peng;
Wang, Jinke

Publication type:

Article

Exploiting sequence labeling framework to extract document-level relations from biomedical texts.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3457-2

By:

Li, Zhiheng;
Yang, Zhihao;
Xiang, Yang;
Luo, Ling;
Sun, Yuanyuan;
Lin, Hongfei

Publication type:

Article

HeMoQuest: a webserver for qualitative prediction of transient heme binding to protein motifs.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3420-2

By:

Paul George, Ajay Abisheck;
Lacerda, Mauricio;
Syllwasschy, Benjamin Franz;
Hopp, Marie-Thérèse;
Wißbrock, Amelie;
Imhof, Diana

Publication type:

Article

QuaDMutNetEx: a method for detecting cancer driver genes with low mutation frequency.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3449-2

By:

Bokhari, Yahya;
Alhareeri, Areej;
Arodz, Tomasz

Publication type:

Article

Hellinger distance-based stable sparse feature selection for high-dimensional class-imbalanced data.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3411-3

By:

Fu, Guang-Hui;
Wu, Yuan-Jiao;
Zong, Min-Jie;
Pan, Jianxin

Publication type:

Article

Fast tree aggregation for consensus hierarchical clustering.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3453-6

By:

Hulot, Audrey;
Chiquet, Julien;
Jaffrézic, Florence;
Rigaill, Guillem

Publication type:

Article

Standard machine learning approaches outperform deep representation learning on phenotype prediction from transcriptomics data.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3427-8

By:

Smith, Aaron M.;
Walsh, Jonathan R.;
Long, John;
Davis, Craig B.;
Henstock, Peter;
Hodge, Martin R.;
Maciejewski, Mateusz;
Mu, Xinmeng Jasmine;
Ra, Stephen;
Zhao, Shanrong;
Ziemek, Daniel;
Fisher, Charles K.

Publication type:

Article

Efficient identification of multiple pathways: RNA-Seq analysis of livers from 56Fe ion irradiated mice.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3446-5

By:

Nia, Anna M.;
Chen, Tianlong;
Barnette, Brooke L.;
Khanipov, Kamil;
Ullrich, Robert L.;
Bhavnani, Suresh K.;
Emmett, Mark R.

Publication type:

Article

Correction to: Computational assembly of a human Cytomegalovirus vaccine upon experimental epitope legacy.

Published in:

2020

By:

Quinzo, Monica J.;
Lafuente, Esther M.;
Zuluaga, Pilar;
Flower, Darren R.;
Reche, Pedro A.

Publication type:

Correction Notice

2D electrophoresis image brightness correction based on gradient interval histogram.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3432-y

By:

Ou, Qiaofeng;
Xiao, Jiabing;
Yu, Lei;
Wu, Kaizhi;
Xiong, Bangshu

Publication type:

Article

Modeling methylation dynamics with simultaneous changes in CpG islands.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3438-5

By:

Grosser, Konrad;
Metzler, Dirk

Publication type:

Article

SEQing: web-based visualization of iCLIP and RNA-seq data in an interactive python framework.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3434-9

By:

Lewinski, Martin;
Bramkamp, Yannik;
Köster, Tino;
Staiger, Dorothee

Publication type:

Article

RASflow: an RNA-Seq analysis workflow with Snakemake.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3433-x

By:

Zhang, Xiaokang;
Jonassen, Inge

Publication type:

Article

A deep learning-based framework for lung cancer survival analysis with biomarker interpretation.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3431-z

By:

Cui, Lei;
Li, Hansheng;
Hui, Wenli;
Chen, Sitong;
Yang, Lin;
Kang, Yuxin;
Bo, Qirong;
Feng, Jun

Publication type:

Article

LCQS: an efficient lossless compression tool of quality scores with random access functionality.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3428-7

By:

Fu, Jiabing;
Ke, Bixin;
Dong, Shoubin

Publication type:

Article

PESM: predicting the essentiality of miRNAs based on gradient boosting machines and sequences.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3426-9

By:

Yan, Cheng;
Wu, Fang-Xiang;
Wang, Jianxin;
Duan, Guihua

Publication type:

Article

Revealing hidden information in osteoblast's mechanotransduction through analysis of time patterns of critical events.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3394-0

By:

Ascolani, Gianluca;
Skerry, Timothy M.;
Lacroix, Damien;
Dall'Ara, Enrico;
Shuaib, Aban

Publication type:

Article

MethylNet: an automated and modular deep learning approach for DNA methylation analysis.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3443-8

By:

Levy, Joshua J.;
Titus, Alexander J.;
Petersen, Curtis L.;
Chen, Youdinghuan;
Salas, Lucas A.;
Christensen, Brock C.

Publication type:

Article

Variant effect predictions capture some aspects of deep mutational scanning experiments.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3439-4

By:

Reeb, Jonas;
Wirth, Theresa;
Rost, Burkhard

Publication type:

Article

AllEnricher: a comprehensive gene set function enrichment tool for both model and non-model species.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3408-y

By:

Zhang, Du;
Hu, Qi;
Liu, Xinxing;
Zou, Kai;
Sarkodie, Emmanuel Konadu;
Liu, Xueduan;
Gao, Fei

Publication type:

Article

Joining Illumina paired-end reads for classifying phylogenetic marker sequences.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3445-6

By:

Liu, Tsunglin;
Chen, Chen-Yu;
Chen-Deng, An;
Chen, Yi-Lin;
Wang, Jiu-Yao;
Hou, Yung-I;
Lin, Min-Ching

Publication type:

Article

Machine learning prediction of oncology drug targets based on protein and network properties.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3442-9

By:

Dezső, Zoltán;
Ceccarelli, Michele

Publication type:

Article

MoAIMS: efficient software for detection of enriched regions of MeRIP-Seq.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3430-0

By:

Zhang, Yiqian;
Hamada, Michiaki

Publication type:

Article

Network hub-node prioritization of gene regulation with intra-network association.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3444-7

By:

Chang, Hung-Ching;
Chu, Chiao-Pei;
Lin, Shu-Ju;
Hsiao, Chuhsing Kate

Publication type:

Article

A big data approach to metagenomics for all-food-sequencing.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3429-6

By:

Kobus, Robin;
Abuín, José M.;
Müller, André;
Hellmann, Sören Lukas;
Pichel, Juan C.;
Pena, Tomás F.;
Hildebrandt, Andreas;
Hankeln, Thomas;
Schmidt, Bertil

Publication type:

Article

Visually guided classification trees for analyzing chronic patients.

Published in:

BMC Bioinformatics, 2020, v. 21, p. 1, doi. 10.1186/s12859-020-3359-3

By:

Soguero-Ruiz, Cristina;
Mora-Jiménez, Inmaculada;
Mohedano-Munoz, Miguel A.;
Rubio-Sanchez, Manuel;
Miguel-Bohoyo, Pablo de;
Sanchez, Alberto

Publication type:

Article

A machine learning approach on multiscale texture analysis for breast microcalcification diagnosis.

Published in:

BMC Bioinformatics, 2020, v. 21, p. 1, doi. 10.1186/s12859-020-3358-4

By:

Fanizzi, Annarita;
Basile, Teresa M. A.;
Losurdo, Liliana;
Bellotti, Roberto;
Bottigli, Ubaldo;
Dentamaro, Rosalba;
Didonna, Vittorio;
Fausto, Alfonso;
Massafra, Raffaella;
Moschetta, Marco;
Popescu, Ondina;
Tamborra, Pasquale;
Tangaro, Sabina;
La Forgia, Daniele

Publication type:

Article

Applications of machine learning for simulations of red blood cells in microfluidic devices.

Published in:

BMC Bioinformatics, 2020, v. 21, p. 1, doi. 10.1186/s12859-020-3357-5

By:

Bachratý, Hynek;
Bachratá, Katarína;
Chovanec, Michal;
Jančigová, Iveta;
Smiešková, Monika;
Kovalčíková, Kristína

Publication type:

Article

Robust pathway sampling in phenotype prediction. Application to triple negative breast cancer.

Published in:

BMC Bioinformatics, 2020, v. 21, p. 1, doi. 10.1186/s12859-020-3356-6

By:

Cernea, Ana;
Fernández-Martínez, Juan Luis;
deAndrés-Galiana, Enrique J.;
Fernández-Ovies, Francisco Javier;
Alvarez-Machancoses, Oscar;
Fernández-Muñiz, Zulima;
Saligan, Leorey N.;
Sonis, Stephen T.

Publication type:

Article

FLIR vs SEEK thermal cameras in biomedicine: comparative diagnosis through infrared thermography.

Published in:

BMC Bioinformatics, 2020, v. 21, p. 1, doi. 10.1186/s12859-020-3355-7

By:

Kirimtat, Ayca;
Krejcar, Ondrej;
Selamat, Ali;
Herrera-Viedma, Enrique

Publication type:

Article

Conversion from electrocardiosignals to equivalent electrical sources on heart surface.

Published in:

BMC Bioinformatics, 2020, v. 21, p. 1, doi. 10.1186/s12859-020-3354-8

By:

Zhikhareva, G. V.;
Kramm, Mikhail N.;
Bodin, O. N.;
Seepold, Ralf;
Madrid, Natividad Martinez;
Chernikov, A. I.;
Kupriyanova, Y. A.;
Zhuravleva, N. A.

Publication type:

Article

Sarcopenia negatively affects hip structure analysis variables in a group of Lebanese postmenopausal women.

Published in:

BMC Bioinformatics, 2020, v. 21, p. 1, doi. 10.1186/s12859-020-3353-9

By:

Saddik, Hayman;
Nasr, Riad;
Pinti, Antonio;
Watelain, Eric;
Fayad, Ibrahim;
Baddoura, Rafic;
Berro, Abdel-Jalil;
Al Rassy, Nathalie;
Lespessailles, Eric;
Toumi, Hechmi;
El Hage, Rawad

Publication type:

Article

GSP4PDB: a web tool to visualize, search and explore protein-ligand structural patterns.

Published in:

BMC Bioinformatics, 2020, v. 21, p. 1, doi. 10.1186/s12859-020-3352-x

By:

Angles, Renzo;
Arenas-Salinas, Mauricio;
García, Roberto;
Reyes-Suarez, Jose Antonio;
Pohl, Ehmke

Publication type:

Article

DePicT Melanoma Deep-CLASS: a deep convolutional neural networks approach to classify skin lesion images.

Published in:

BMC Bioinformatics, 2020, v. 21, p. 1, doi. 10.1186/s12859-020-3351-y

By:

Nasiri, Sara;
Helsper, Julien;
Jung, Matthias;
Fathi, Madjid

Publication type:

Article

Amazing symmetrical clustering in chloroplast genomes.

Published in:

BMC Bioinformatics, 2020, v. 21, p. 1, doi. 10.1186/s12859-020-3350-z

By:

Sadovsky, Michael G.;
Senashova, Maria Yu;
Malyshev, Andrew V.

Publication type:

Article

Accurately estimating the length distributions of genomic micro-satellites by tumor purity deconvolution.

Published in:

BMC Bioinformatics, 2020, v. 21, p. 1, doi. 10.1186/s12859-020-3349-5

By:

Wang, Yixuan;
Zhang, Xuanping;
Xiao, Xiao;
Zhang, Fei-Ran;
Yan, Xinxing;
Feng, Xuan;
Zhao, Zhongmeng;
Guan, Yanfang;
Wang, Jiayin

Publication type:

Article

BLAMM: BLAS-based algorithm for finding position weight matrix occurrences in DNA sequences on CPUs and GPUs.

Published in:

BMC Bioinformatics, 2020, v. 21, p. 1, doi. 10.1186/s12859-020-3348-6

By:

Fostier, Jan

Publication type:

Article

visGReMLIN: graph mining-based detection and visualization of conserved motifs at 3D protein-ligand interface at the atomic level.

Published in:

BMC Bioinformatics, 2020, v. 21, p. 1, doi. 10.1186/s12859-020-3347-7

By:

Ribeiro, Vagner S.;
Santana, Charles A.;
Fassio, Alexandre V.;
Cerqueira, Fabio R.;
da Silveira, Carlos H.;
Romanelli, João P. R.;
Patarroyo-Vargas, Adriana;
Oliveira, Maria G. A.;
Gonçalves-Almeida, Valdete;
Izidoro, Sandro C.;
de Melo-Minardi, Raquel C.;
Silveira, Sabrina de A.

Publication type:

Article

Ensemble disease gene prediction by clinical sample-based networks.

Published in:

BMC Bioinformatics, 2020, v. 21, p. 1, doi. 10.1186/s12859-020-3346-8

By:

Luo, Ping;
Tian, Li-Ping;
Chen, Bolin;
Xiao, Qianghua;
Wu, Fang-Xiang

Publication type:

Article

Prediction of tumor location in prostate cancer tissue using a machine learning system on gene expression data.

Published in:

BMC Bioinformatics, 2020, v. 21, p. 1, doi. 10.1186/s12859-020-3345-9

By:

Hamzeh, Osama;
Alkhateeb, Abedalrhman;
Zheng, Julia;
Kandalam, Srinath;
Rueda, Luis

Publication type:

Article

Dynamic incorporation of prior knowledge from multiple domains in biomarker discovery.

Published in:

BMC Bioinformatics, 2020, v. 21, p. 1, doi. 10.1186/s12859-020-3344-x

By:

Guan, Xin;
Runger, George;
Liu, Li

Publication type:

Article

PyBSASeq: a simple and effective algorithm for bulked segregant analysis with whole-genome sequencing data.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3435-8

By:

Zhang, Jianbo;
Panthee, Dilip R.

Publication type:

Article

Gamevar.f90: a software package for calculating individual gametic diversity.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3417-x

By:

de Abreu Santos, Daniel Jordan;
Cole, John B.;
Liu, George E.;
VanRaden, Paul M.;
Ma, Li

Publication type:

Article

CNV Radar: an improved method for somatic copy number alteration characterization in oncology.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3397-x

By:

Soong, David;
Stratford, Jeran;
Avet-Loiseau, Herve;
Bahlis, Nizar;
Davies, Faith;
Dispenzieri, Angela;
Sasser, A. Kate;
Schecter, Jordan M.;
Qi, Ming;
Brown, Chad;
Jones, Wendell;
Keats, Jonathan J.;
Auclair, Daniel;
Chiu, Christopher;
Powers, Jason;
Schaffer, Michael

Publication type:

Article

Comparative study of whole exome sequencing-based copy number variation detection tools.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3421-1

By:

Zhao, Lanling;
Liu, Han;
Yuan, Xiguo;
Gao, Kun;
Duan, Junbo

Publication type:

Article

Family reunion via error correction: an efficient analysis of duplex sequencing data.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3419-8

By:

Stoler, Nicholas;
Arbeithuber, Barbara;
Povysil, Gundula;
Heinzl, Monika;
Salazar, Renato;
Makova, Kateryna D;
Tiemann-Boege, Irene;
Nekrutenko, Anton

Publication type:

Article

Modelling the effect of subcellular mutations on the migration of cells in the colorectal crypt.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3391-3

By:

Romijn, Lotte B.;
Almet, Axel A.;
Tan, Chin Wee;
Osborne, James M.

Publication type:

Article

LK-DFBA: a linear programming-based modeling strategy for capturing dynamics and metabolite-dependent regulation in metabolism.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3422-0

By:

Dromms, Robert A.;
Lee, Justin Y.;
Styczynski, Mark P.

Publication type:

Article

Comparison of pathway and gene-level models for cancer prognosis prediction.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3423-z

By:

Zheng, Xingyu;
Amos, Christopher I.;
Frost, H. Robert

Publication type:

Article

Assessing stationary distributions derived from chromatin contact maps.

Published in:

BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3424-y

By:

Segal, Mark R.;
Fletez-Brant, Kipper

Publication type:

Article