Works matching IS 14712105 AND DT 2019 AND VI 20 AND IP 1

Results: 511

Alignment-free genomic sequence comparison using FCGR and signal processing.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3330-3

By:

Lichtblau, Daniel

Publication type:

Article

ZDOG: zooming in on dominating genes with mutations in cancer pathways.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3326-z

By:

Alberts, Rudi;
Chen, Jinyu;
Zhang, Louxin

Publication type:

Article

Modelling TERT regulation across 19 different cancer types based on the MIPRIP 2.0 gene regulatory network approach.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3323-2

By:

Poos, Alexandra M.;
Kordaß, Theresa;
Kolte, Amol;
Ast, Volker;
Oswald, Marcus;
Rippe, Karsten;
König, Rainer

Publication type:

Article

The H3ABioNet helpdesk: an online bioinformatics resource, enhancing Africa's capacity for genomics research.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3322-3

By:

Kumuthini, Judit;
Zass, Lyndon;
Panji, Sumir;
Salifu, Samson P.;
Kayondo, Jonathan K.;
Nembaware, Victoria;
Mbiyavanga, Mamana;
Olabode, Ajayi;
Kishk, Ali;
Wells, Gordon;
Mulder, Nicola J.

Publication type:

Article

DynaVenn: web-based computation of the most significant overlap between ordered sets.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3320-5

By:

Amand, Jérémy;
Fehlmann, Tobias;
Backes, Christina;
Keller, Andreas

Publication type:

Article

LMAP_S: Lightweight Multigene Alignment and Phylogeny eStimation.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3292-5

By:

Maldonado, Emanuel;
Antunes, Agostinho

Publication type:

Article

A novel method detecting the key clinic factors of portal vein system thrombosis of splenectomy & cardia devascularization patients for cirrhosis & portal hypertension.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3233-3

By:

Wang, Mingzhao;
Ding, Linglong;
Xu, Meng;
Xie, Juanying;
Wu, Shengli;
Xu, Shengquan;
Yao, Yingmin;
Liu, Qingguang

Publication type:

Article

Protein sequence information extraction and subcellular localization prediction with gapped k-Mer method.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3232-4

By:

Yao, Yu-hua;
Lv, Ya-ping;
Li, Ling;
Xu, Hui-min;
Ji, Bin-bin;
Chen, Jing;
Li, Chun;
Liao, Bo;
Nan, Xu-ying

Publication type:

Article

Multi-cancer samples clustering via graph regularized low-rank representation method under sparse and symmetric constraints.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3231-5

By:

Wang, Juan;
Lu, Cong-Hai;
Liu, Jin-Xing;
Dai, Ling-Yun;
Kong, Xiang-Zhen

Publication type:

Article

The exploration of disease-specific gene regulatory networks in esophageal carcinoma and stomach adenocarcinoma.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3230-6

By:

Qin, Guimin;
Yang, Luqiong;
Ma, Yuying;
Liu, Jiayan;
Huo, Qiuyan

Publication type:

Article

PCA via joint graph Laplacian and sparse constraint: Identification of differentially expressed genes and sample clustering on gene expression data.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3229-z

By:

Feng, Chun-Mei;
Xu, Yong;
Hou, Mi-Xiao;
Dai, Ling-Yun;
Shang, Jun-Liang

Publication type:

Article

An efficient gene selection method for microarray data based on LASSO and BPSO.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3228-0

By:

Xiong, Ying;
Ling, Qing-Hua;
Han, Fei;
Liu, Qing-Hua

Publication type:

Article

PEIS: a novel approach of tumor purity estimation by identifying information sites through integrating signal based on DNA methylation data.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3227-1

By:

Wang, Shudong;
Wang, Lihua;
Zhang, Yuanyuan;
Pang, Shanchen;
Wang, Xinzeng

Publication type:

Article

VariFAST: a variant filter by automated scoring based on tagged-signatures.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3226-2

By:

Zhang, Hang;
Wang, Ke;
Zhou, Juan;
Chen, Jianhua;
Xu, Yizhou;
Wang, Dong;
Li, Xiaoqi;
Sun, Renliang;
Zhang, Mancang;
Wang, Zhuo;
Shi, Yongyong

Publication type:

Article

The coming era of artificial intelligence in biological data science.

Published in:

2019

By:

Han, Henry;
Liu, Wenbin

Publication type:

Editorial

Benchmarking the PEPOP methods for mimicking discontinuous epitopes.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3189-3

By:

Demolombe, Vincent;
de Brevern, Alexandre G.;
Molina, Franck;
Lavigne, Géraldine;
Granier, Claude;
Moreau, Violaine

Publication type:

Article

Rearrangement analysis of multiple bacterial genomes.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3293-4

By:

Noureen, Mehwish;
Ipputa Tada;
Takeshi Kawashima;
Masanori Arita

Publication type:

Article

Old drug repositioning and new drug discovery through similarity learning from drug-target joint feature spaces.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3238-y

By:

Yi Zheng;
Hui Peng;
Xiaocai Zhang;
Zhixun Zhao;
Xiaoying Gao;
Jinyan Li

Publication type:

Article

Identifying miRNA synergism using multiple-intervention causal inference.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3215-5

By:

Junpeng Zhang;
Vu Viet Hoang Pham;
Lin Liu;
Taosheng Xu;
Buu Truong;
Jiuyong Li;
Nini Rao;
Thuc Duy Le

Publication type:

Article

Gencore: an efficient tool to generate consensus reads for error suppressing and duplicate removing of NGS data.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3280-9

By:

Shifu Chen;
Yanqing Zhou;
Yaru Chen;
Tanxiao Huang;
Wenting Liao;
Yun Xu;
Zhicheng Li;
Jia Gu

Publication type:

Article

Biomedical named entity recognition using deep neural networks with contextual information.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3321-4

By:

Cho, Hyejin;
Lee, Hyunju

Publication type:

Article

Identification of infectious disease-associated host genes using machine learning techniques.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3317-0

By:

Barman, Ranjan Kumar;
Mukhopadhyay, Anirban;
Maulik, Ujjwal;
Das, Santasabuj

Publication type:

Article

Improvement of the memory function of a mutual repression network in a stochastic environment by negative autoregulation.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3315-2

By:

Hasan, A. B. M. Shamim Ul;
Kurata, Hiroyuki;
Pechmann, Sebastian

Publication type:

Article

SpliceFinder: ab initio prediction of splice sites using convolutional neural network.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3306-3

By:

Wang, Ruohan;
Wang, Zishuai;
Wang, Jianping;
Li, Shuaicheng

Publication type:

Article

Venn-diaNet : venn diagram based network propagation analysis framework for comparing multiple biological experiments.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3302-7

By:

Hur, Benjamin;
Kang, Dongwon;
Lee, Sangseon;
Moon, Ji Hwan;
Lee, Gung;
Kim, Sun

Publication type:

Article

LEMON: a method to construct the local strains at horizontal gene transfer sites in gut metagenomics.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3301-8

By:

Li, Chen;
Jiang, Yiqi;
Li, Shuaicheng

Publication type:

Article

Deep mixed model for marginal epistasis detection and population stratification correction in genome-wide association studies.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3300-9

By:

Wang, Haohan;
Yue, Tianwei;
Yang, Jingkang;
Wu, Wei;
Xing, Eric P.

Publication type:

Article

iProDNA-CapsNet: identifying protein-DNA binding residues using capsule neural networks.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3295-2

By:

Nguyen, Binh P.;
Nguyen, Quang H.;
Doan-Ngoc, Giang-Nam;
Nguyen-Vo, Thanh-Hoang;
Rahardja, Susanto

Publication type:

Article

Model-based cell clustering and population tracking for time-series flow cytometry data.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3294-3

By:

Minoura, Kodai;
Abe, Ko;
Maeda, Yuka;
Nishikawa, Hiroyoshi;
Shimamura, Teppei

Publication type:

Article

DeepMF: deciphering the latent patterns in omics profiles with a deep learning method.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3291-6

By:

Chen, Lingxi;
Xu, Jiao;
Li, Shuai Cheng

Publication type:

Article

ki67 nuclei detection and ki67-index estimation: a novel automatic approach based on human vision modeling.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3285-4

By:

Barricelli, Barbara Rita;
Casiraghi, Elena;
Gliozzo, Jessica;
Huber, Veronica;
Leone, Biagio Eugenio;
Rizzi, Alessandro;
Vergani, Barbara

Publication type:

Article

Fast and accurate microRNA search using CNN.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3279-2

By:

Tang, Xubo;
Sun, Yanni

Publication type:

Article

IILLS: predicting virus-receptor interactions based on similarity and semi-supervised learning.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3278-3

By:

Yan, Cheng;
Duan, Guihua;
Wu, Fang-Xiang;
Wang, Jianxin

Publication type:

Article

Topological structure analysis of chromatin interaction networks.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3237-z

By:

Viksna, Juris;
Melkus, Gatis;
Celms, Edgars;
Čerāns, Kārlis;
Freivalds, Karlis;
Kikusts, Paulis;
Lace, Lelde;
Opmanis, Mārtiņš;
Rituma, Darta;
Rucevskis, Peteris

Publication type:

Article

Efficient computation of stochastic cell-size transient dynamics.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3213-7

By:

Nieto-Acuna, Cesar Augusto;
Vargas-Garcia, Cesar Augusto;
Singh, Abhyudai;
Pedraza, Juan Manuel

Publication type:

Article

Transcription factor regulatory modules provide the molecular mechanisms for functional redundancy observed among transcription factors in yeast.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3212-8

By:

Yang, Tzu-Hsien

Publication type:

Article

ICGRM: integrative construction of genomic relationship matrix combining multiple genomic regions for big dataset.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3319-y

By:

Jiang, Dan;
Xin, Cong;
Ye, Jinhua;
Yuan, Yingbo;
Fang, Ming

Publication type:

Article

PROMO: an interactive tool for analyzing clinically-labeled multi-omic cancer datasets.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3142-5

By:

Netanely, Dvir;
Stern, Neta;
Laufer, Itay;
Shamir, Ron

Publication type:

Article

Antimicrobial peptide identification using multi-scale convolutional network.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3327-y

By:

Su, Xin;
Xu, Jing;
Yin, Yanbin;
Quan, Xiongwen;
Zhang, Han

Publication type:

Article

perfectphyloR: An R package for reconstructing perfect phylogenies.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3313-4

By:

Karunarathna, Charith B.;
Graham, Jinko

Publication type:

Article

Machine learning-based identification and rule-based normalization of adverse drug reactions in drug labels.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3195-5

By:

Tiftikci, Mert;
Özgür, Arzucan;
He, Yongqun;
Hur, Junguk

Publication type:

Article

VIO: ontology classification and study of vaccine responses given various experimental and analytical conditions.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3194-6

By:

Ong, Edison;
Sun, Peter;
Berke, Kimberly;
Zheng, Jie;
Wu, Guanming;
He, Yongqun

Publication type:

Article

Conceiving an application ontology to model patient human papillomavirus vaccine counseling for dialogue management.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3193-7

By:

Amith, Muhammad;
Roberts, Kirk;
Tao, Cui

Publication type:

Article

Enhancing the drug ontology with semantically-rich representations of National Drug Codes and RxNorm unique concept identifiers.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3192-8

By:

Bona, Jonathan P.;
Brochhausen, Mathias;
Hogan, William R.

Publication type:

Article

A 2018 workshop: vaccine and drug ontology studies (VDOS 2018).

Published in:

2019

By:

Hur, Junguk;
Tao, Cui;
He, Yongqun

Publication type:

Editorial

Metabolic disassembler for understanding and predicting the biosynthetic units of natural products.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3183-9

By:

Amano, Kohei;
Matsumoto, Tsubasa;
Tanaka, Kenichi;
Funatsu, Kimito;
Kotera, Masaaki

Publication type:

Article

Evaluation of knowledge graph embedding approaches for drug-drug interaction prediction in realistic settings.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3284-5

By:

Celebi, Remzi;
Uyar, Huseyin;
Yasar, Erkan;
Gumus, Ozgur;
Dikenelli, Oguz;
Dumontier, Michel

Publication type:

Article

Wound area measurement with 3D transformation and smartphone images.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3308-1

By:

Liu, Chunhui;
Fan, Xingyu;
Guo, Zhizhi;
Mo, Zhongjun;
Chang, Eric I-Chao;
Xu, Yan

Publication type:

Article

Deriving a Boolean dynamics to reveal macrophage activation with in vitro temporal cytokine expression profiles.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3304-5

By:

Ramirez, Ricardo;
Herrera, Allen Michael;
Ramirez, Joshua;
Qian, Chunjiang;
Melton, David W.;
Shireman, Paula K.;
Jin, Yu-Fang

Publication type:

Article

Base-pair ambiguity and the kinetics of RNA folding.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-3303-6

By:

Zhou, Guangyao;
Loper, Jackson;
Geman, Stuart

Publication type:

Article