Works matching IS 14712105 AND DT 2018 AND VI 19 AND IP 1

Results: 296

hoDCA: higher order direct-coupling analysis.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2583-6

By:

Schmidt, Michael;
Hamacher, Kay

Publication type:

Article

Time-lagged Ordered Lasso for network inference.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2558-7

By:

Nguyen, Phan;
Braun, Rosemary

Publication type:

Article

Capturing context-specific regulation in molecular interaction networks.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2513-7

By:

Rush, Stephen T. A.;
Repsilber, Dirk

Publication type:

Article

Web-based design and analysis tools for CRISPR base editing.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2585-4

By:

Hwang, Gue-Ho;
Park, Jeongbin;
Lim, Kayeong;
Kim, Sunghyun;
Yu, Jihyeon;
Yu, Eunchong;
Kim, Sang-Tae;
Eils, Roland;
Kim, Jin-Soo;
Bae, Sangsu

Publication type:

Article

SMARTcleaner: identify and clean off-target signals in SMART ChIP-seq analysis.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2577-4

By:

Zhao, Dejian;
Zheng, Deyou

Publication type:

Article

Degeneracy and genetic assimilation in RNA evolution.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2497-3

By:

Rezazadegan, Reza;
Reidys, Christian

Publication type:

Article

MeDEStrand: an improved method to infer genome-wide absolute methylation levels from DNA enrichment data.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2574-7

By:

Xu, Jingting;
Liu, Shimeng;
Yin, Ping;
Bulun, Serdar;
Dai, Yang

Publication type:

Article

Fast and scalable neural embedding models for biomedical sentence classification.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2496-4

By:

Agibetov, Asan;
Blagec, Kathrin;
Xu, Hong;
Samwald, Matthias

Publication type:

Article

FELLA: an R package to enrich metabolomics data.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2487-5

By:

Picart-Armada, Sergio;
Fernández-Albert, Francesc;
Vinaixa, Maria;
Yanes, Oscar;
Perera-Lluna, Alexandre

Publication type:

Article

NGmerge: merging paired-end reads via novel empirically-derived models of sequencing errors.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2579-2

By:

Gaspar, John M.

Publication type:

Article

Protein complexes identification based on go attributed network embedding.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2555-x

By:

Xu, Bo;
Li, Kun;
Zheng, Wei;
Liu, Xiaoxia;
Zhang, Yijia;
Zhao, Zhehuan;
He, Zengyou

Publication type:

Article

Towards practical privacy-preserving genome-wide association study.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2541-3

By:

Bonte, Charlotte;
Makri, Eleftheria;
Ardeshirdavani, Amin;
Simm, Jaak;
Moreau, Yves;
Vercauteren, Frederik

Publication type:

Article

Measures of co-expression for improved function prediction of long non-coding RNAs.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2546-y

By:

Ehsani, Rezvan;
Drabløs, Finn

Publication type:

Article

PASNet: pathway-associated sparse deep neural network for prognosis prediction from high-throughput data.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2500-z

By:

Hao, Jie;
Kim, Youngsoon;
Kim, Tae-Kyung;
Kang, Mingon

Publication type:

Article

GLUE: a flexible software system for virus sequence data.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2459-9

By:

Singer, Joshua B.;
Thomson, Emma C.;
McLauchlan, John;
Hughes, Joseph;
Gifford, Robert J.

Publication type:

Article

NIPTeR: an R package for fast and accurate trisomy prediction in non-invasive prenatal testing.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2557-8

By:

Johansson, Lennart F.;
de Weerd, Hendrik A.;
de Boer, Eddy N.;
van Dijk, Freerk;
te Meerman, Gerard J.;
Sijmons, Rolf H.;
Sikkema-Raddatz, Birgit;
Swertz, Morris A.

Publication type:

Article

Gene co-expression networks from RNA sequencing of dairy cattle identifies genes and pathways affecting feed efficiency.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2553-z

By:

Salleh, S. M.;
Mazzoni, G.;
Løvendahl, P.;
Kadarmideen, H. N.

Publication type:

Article

Correction to: Evaluating the impact of topological protein features on the negative examples selection.

Published in:

2018

By:

Boldi, Paolo;
Frasca, Marco;
Malchiodi, Dario

Publication type:

Correction Notice

iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2486-6

By:

Ge, Steven Xijin;
Son, Eun Wo;
Yao, Runan

Publication type:

Article

Analyzing the similarity of samples and genes by MG-PCC algorithm, t-SNE-SS and t-SNE-SG maps.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2495-5

By:

Jia, Xingang;
Han, Qiuhong;
Lu, Zuhong

Publication type:

Article

Towards a supervised classification of neocortical interneuron morphologies.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2470-1

By:

Mihaljević, Bojan;
Larrañaga, Pedro;
Benavides-Piccione, Ruth;
Hill, Sean;
DeFelipe, Javier;
Bielza, Concha

Publication type:

Article

Mind the gaps: overlooking inaccessible regions confounds statistical testing in genome analysis.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2438-1

By:

Domanska, Diana;
Kanduri, Chakravarthi;
Simovski, Boris;
Sandve, Geir Kjetil

Publication type:

Article

Accelerating a cross-correlation score function to search modifications using a single GPU.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2559-6

By:

Kim, Hyunwoo;
Han, Sunggeun;
Um, Jung-Ho;
Park, Kyongseok

Publication type:

Article

Subject level clustering using a negative binomial model for small transcriptomic studies.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2556-9

By:

Li, Qian;
Noel-MacDonnell, Janelle R.;
Koestler, Devin C.;
Goode, Ellen L.;
Fridley, Brooke L.

Publication type:

Article

VarGenius executes cohort-level DNA-seq variant calling and annotation and allows to manage the resulting data through a PostgreSQL database.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2532-4

By:

Musacchia, F.;
Ciolfi, A.;
Mutarelli, M.;
Bruselles, A.;
Castello, R.;
Pinelli, M.;
Basu, S.;
Banfi, S.;
Casari, G.;
Tartaglia, M.;
Nigro, V.

Publication type:

Article

A statistical framework for detecting mislabeled and contaminated samples using shallow-depth sequence data.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2512-8

By:

Chan, Ariel W.;
Williams, Amy L.;
Jannink, Jean-Luc

Publication type:

Article

A multi-omics approach for identifying important pathways and genes in human cancer.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2476-8

By:

Frost, H. Robert;
Amos, Christopher I.

Publication type:

Article

A nearest-neighbors network model for sequence data reveals new insight into genotype distribution of a pathogen.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2453-2

By:

Catanese, Helen N.;
Brayton, Kelly A.;
Gebremedhin, Assefaw H.

Publication type:

Article

BiSpark: a Spark-based highly scalable aligner for bisulfite sequencing data.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2498-2

By:

Soe, Seokjun;
Park, Yoonjae;
Chae, Heejoon

Publication type:

Article

A new sequence logo plot to highlight enrichment and depletion.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2489-3

By:

Dey, Kushal K.;
Xie, Dongyue;
Stephens, Matthew

Publication type:

Article

Using Kinect to classify Parkinson's disease stages related to severity of gait impairment.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2488-4

By:

Dranca, Lacramioara;
de Abetxuko Ruiz de Mendarozketa, Lopez;
Goñi, Alfredo;
Illarramendi, Arantza;
Navalpotro Gomez, Irene;
Delgado Alvarado, Manuel;
Cruz Rodríguez-Oroz, María

Publication type:

Article

GOnet: a tool for interactive Gene Ontology analysis.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2533-3

By:

Pomaznoy, Mikhail;
Ha, Brendan;
Peters, Bjoern

Publication type:

Article

Antimicrobial peptide similarity and classification through rough set theory using physicochemical boundaries.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2514-6

By:

Boone, Kyle;
Camarda, Kyle;
Spencer, Paulette;
Tamerler, Candan

Publication type:

Article

Shortest path counting in probabilistic biological networks.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2480-z

By:

Ren, Yuanfang;
Ay, Ahmet;
Kahveci, Tamer

Publication type:

Article

Automated generation of genome-scale metabolic draft reconstructions based on KEGG.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2472-z

By:

Karlsen, Emil;
Schulz, Christian;
Almaas, Eivind

Publication type:

Article

Integrated genome sizing (IGS) approach for the parallelization of whole genome analysis.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2499-1

By:

Sona, Peter;
Hong, Jong Hui;
Lee, Sunho;
Kim, Byong Joon;
Hong, Woon-Young;
Jung, Jongcheol;
Kim, Han-Na;
Kim, Hyung-Lae;
Christopher, David;
Herviou, Laurent;
Im, Young Hwan;
Lee, Kwee-Yum;
Kim, Tae Soon;
Jung, Jongsun

Publication type:

Article

Full-length title: NRPPUR database search and in vitro analysis identify an NRPS-PKS biosynthetic gene cluster with a potential antibiotic effect.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2479-5

By:

Fritz, Shirley;
Rajaonison, Andriamiharimamy;
Chabrol, Olivier;
Raoult, Didier;
Rolain, Jean-Marc;
Merhej, Vicky

Publication type:

Article

Structure-function analysis of Sedolisins: evolution of tripeptidyl peptidase and endopeptidase subfamilies in fungi.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2404-y

By:

Orts, Facundo;
ten Have, Arjen

Publication type:

Article

Representativeness of variation benchmark datasets.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2478-6

By:

Schaafsma, Gerard C. P.;
Vihinen, Mauno

Publication type:

Article

Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2485-7

By:

Roach, Michael J.;
Schmidt, Simon A.;
Borneman, Anthony R.

Publication type:

Article

PanoromiX: a time-course network medicine platform integrating molecular assays and pathophenotypic data.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2494-6

By:

Ruoting Yang;
Watson, Daniel;
Williams, Joshua;
Kumar, Raina;
Campbell, Ross;
Mudunuri, Uma;
Hammamieh, Rasha;
Jett, Marti

Publication type:

Article

Learning the optimal scale for GWAS through hierarchical SNP aggregation.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2475-9

By:

Guinot, Florent;
Szafranski, Marie;
Ambroise, Christophe;
Samson, Franck

Publication type:

Article

Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2446-1

By:

Baichoo, Shakuntala;
Souilmi, Yassine;
Panji, Sumir;
Botha, Gerrit;
Meintjes, Ayton;
Hazelhurst, Scott;
Bendou, Hocine;
Beste, Eugene de;
Mpangase, Phelelani T.;
Souiai, Oussema;
Alghali, Mustafa;
Yi, Long;
O'Connor, Brian D.;
Crusoe, Michael;
Armstrong, Don;
Aron, Shaun;
Joubert, Fourie;
Ahmed, Azza E.;
Mbiyavanga, Mamana;
Heusden, Peter van

Publication type:

Article

dbMPIKT: a database of kinetic and thermodynamic mutant protein interactions.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2493-7

By:

Liu, Quanya;
Chen, Peng;
Wang, Bing;
Zhang, Jun;
Li, Jinyan

Publication type:

Article

Correction to: cuRnet: an R package for graph traversing on GPU.

Published in:

2018

By:

Bonnici, Vincenzo;
Busato, Federico;
Aldegheri, Stefano;
Akhmedov, Murodzhon;
Cascione, Luciano;
Carmena, Alberto Arribas;
Bertoni, Francesco;
Bombieri, Nicola;
Kwee, Ivo;
Giugno, Rosalba

Publication type:

Correction Notice

SMuRF: a novel tool to identify regulatory elements enriched for somatic point mutations.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2501-y

By:

Guilhamon, Paul;
Lupien, Mathieu

Publication type:

Article

pyHIVE, a health-related image visualization and engineering system using Python.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2477-7

By:

Zhang, Ruochi;
Zhao, Ruixue;
Zhao, Xinyang;
Wu, Di;
Zheng, Weiwei;
Feng, Xin;
Zhou, Fengfeng

Publication type:

Article

Coding Prony's method in MATLAB and applying it to biomedical signal filtering.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2473-y

By:

Fernández Rodríguez, A.;
de Santiago Rodrigo, L.;
López Guillén, E.;
Rodríguez Ascariz, J. M.;
Miguel Jiménez, J. M.;
Boquete, Luciano

Publication type:

Article

COMBImage: a modular parallel processing framework for pairwise drug combination analysis that quantifies temporal changes in label-free video microscopy movies.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2458-x

By:

Chantzi, Efthymia;
Jarvius, Malin;
Niklasson, Mia;
Segerman, Anna;
Gustafsson, Mats G.

Publication type:

Article

A statistical method to identify recombination in bacterial genomes based on SNP incompatibility.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2456-z

By:

Lai, Yi-Pin;
Ioerger, Thomas R.

Publication type:

Article