Works matching IS 14712105 AND DT 2017 AND VI 18

Results: 584

Inactivity periods and postural change speed can explain atypical postural change patterns of Caenorhabditis elegans mutants.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1408-8

By:

Tsukasa Fukunaga;
Wataru Iwasaki

Publication type:

Article

Variational inference for rare variant detection in deep, heterogeneous next-generation sequencing data.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1451-5

By:

Fan Zhang;
Flaherty, Patrick

Publication type:

Article

MicroRNA based Pan-Cancer Diagnosis and Treatment Recommendation.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1421-y

By:

Cheerla, Nikhil;
Gevaert, Olivier

Publication type:

Article

SMITE: an R/Bioconductor package that identifies network modules by integrating genomic and epigenomic information.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1477-3

By:

Ari Wijetunga, N.;
Johnston, Andrew D.;
Maekawa, Ryo;
Delahaye, Fabien;
Ulahannan, Netha;
Kim, Kami;
Greally, John M.

Publication type:

Article

Nonlinear dimensionality reduction methods for synthetic biology biobricks' visualization.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1484-4

By:

Jiaoyun Yang;
Haipeng Wang;
Huitong Ding;
Ning An;
Alterovitz, Gil

Publication type:

Article

Improving protein complex prediction by reconstructing a high-confidence protein-protein interaction network of Escherichia coli from different physical interaction data sources.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1422-x

By:

Taghipour, Shirin;
Zarrineh, Peyman;
Ganjtabesh, Mohammad;
Nowzari-Dalini, Abbas

Publication type:

Article

iGC--an integrated analysis package of gene expression and copy number alteration.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1438-2

By:

Yi-Pin Lai;
Liang-Bo Wang;
Wei-An Wang;
Liang-Chuan Lai;
Mong-Hsun Tsai;
Tzu-Pin Lu;
Chuang, Eric Y.

Publication type:

Article

MVIAeval: a web tool for comprehensively evaluating the performance of a new missing value imputation algorithm.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1429-3

By:

Wei-Sheng Wu;
Meng-Jhun Jhou

Publication type:

Article

Link prediction in drug-target interactions network using similarity indices.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1460-z

By:

Yiding Lu;
Yufan Guo;
Korhonen, Anna

Publication type:

Article

ARA-PEPs: a repository of putative sORF-encoded peptides in Arabidopsis thaliana.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1458-y

By:

Hazarika, Rashmi R.;
De Coninck, Barbara;
Yamamoto, Lidia R.;
Martin, Laura R.;
Cammue, Bruno P. A.;
van Noort, Vera

Publication type:

Article

Empirical assessment of analysis workflows for differential expression analysis of human samples using RNA-Seq.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1457-z

By:

Williams, Claire R.;
Baccarella, Alyssa;
Parrish, Jay Z.;
Kim, Charles C.

Publication type:

Article

MultiDataSet: an R package for encapsulating multiple data sets with application to omic data integration.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1455-1

By:

Hernandez-Ferrer, Carles;
Ruiz-Arenas, Carlos;
Beltran-Gomila, Alba;
González, Juan R.

Publication type:

Article

PCM-SABRE: a platform for benchmarking and comparing outcome prediction methods in precision cancer medicine.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1435-5

By:

Eyal-Altman, Noah;
Last, Mark;
Rubin, Eitan

Publication type:

Article

Predicting probable Alzheimer's disease using linguistic deficits and biomarkers.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1456-0

By:

Orimaye, Sylvester O.;
Wong, Jojo S-M.;
Golden, Karen J.;
Wong, Chee P.;
Soyiri, Ireneous N.

Publication type:

Article

TTCA: an R package for the identification of differentially expressed genes in time course microarray data.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1440-8

By:

Albrecht, Marco;
Stichel, Damian;
Müller, Benedikt;
Merkle, Ruth;
Sticht, Carsten;
Gretz, Norbert;
Klingmüller, Ursula;
Breuhahn, Kai;
Matthäus, Franziska

Publication type:

Article

Detailed simulation of cancer exome sequencing data reveals differences and common limitations of variant callers.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1417-7

By:

Hofmann, Ariane L.;
Behr, Jonas;
Singer, Jochen;
Kuipers, Jack;
Beisel, Christian;
Schraml, Peter;
Moch, Holger;
Beerenwinkel, Niko

Publication type:

Article

A mixed-integer linear programming approach to the reduction of genome-scale metabolic networks.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1412-z

By:

Röhl, Annika;
Bockmayr, Alexander

Publication type:

Article

SCOPA and META-SCOPA: software for the analysis and aggregation of genome-wide association studies of multiple correlated phenotypes.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1437-3

By:

Mägi, Reedik;
Suleimanov, Yury V.;
Clarke, Geraldine M.;
Kaakinen, Marika;
Fischer, Krista;
Prokopenko, Inga;
Morris, Andrew P.

Publication type:

Article

An internet-based bioinformatics toolkit for plant biosecurity diagnosis and surveillance of viruses and viroids.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1428-4

By:

Barrero, Roberto A.;
Napier, Kathryn R.;
Cunnington, James;
Liefting, Lia;
Keenan, Sandi;
Frampton, Rebekah A.;
Szabo, Tamas;
Bulman, Simon;
Hunter, Adam;
Ward, Lisa;
Whattam, Mark;
Bellgard, Matthew I.

Publication type:

Article

Structure alignment-based classification of RNA-binding pockets reveals regional RNA recognition motifs on protein surfaces.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1410-1

By:

Zhi-Ping Liu;
Shutang Liu;
Ruitang Chen;
Xiaopeng Huang;
Ling-Yun Wu

Publication type:

Article

GTB - an online genome tolerance browser.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1436-4

By:

Shihab, Hashem A.;
Rogers, Mark F.;
Ferlaino, Michael;
Campbell, Colin;
Gaunt, Tom R.

Publication type:

Article

GenomeCAT: a versatile tool for the analysis and integrative visualization of DNA copy number variants.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1430-x

By:

Tebel, Katrin;
Boldt, Vivien;
Steininger, Anne;
Port, Matthias;
Ebert, Grit;
Ullmann, Reinhard

Publication type:

Article

MPD: multiplex primer design for next-generation targeted sequencing.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1453-3

By:

Wingo, Thomas S.;
Kotlar, Alex;
Cutler, David J.

Publication type:

Article

KinMap: a web-based tool for interactive navigation through human kinome data.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1433-7

By:

Eid, Sameh;
Turk, Samo;
Volkamer, Andrea;
Rippmann, Friedrich;
Fulle, Simone

Publication type:

Article

T-RECs: rapid and large-scale detection of recombination events among different evolutionary lineages of viral genomes.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1420-z

By:

Tsimpidis, Michail;
Bachoumis, Georgios;
Mimouli, Kalliopi;
Kyriakopoulou, Zaharoula;
Robertson, David L.;
Markoulatos, Panayotis;
Amoutzias, Grigoris D.

Publication type:

Article

Predicting potential drug-drug interactions by integrating chemical, biological, phenotypic and network data.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1415-9

By:

Wen Zhang;
Yanlin Chen;
Feng Liu;
Fei Luo;
Gang Tian;
Xiaohong Li

Publication type:

Article

The use of novel selectivity metrics in kinase research.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1413-y

By:

Bosc, Nicolas;
Meyer, Christophe;
Bonnet, Pascal

Publication type:

Article

Structural prediction of the interaction of the tumor suppressor p27<sup>KIP1</sup> with cyclin A/CDK2 identifies a novel catalytically relevant determinant.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1411-0

By:

Jinyu Li;
Vervoorts, Jörg;
Carloni, Paolo;
Rossetti, Giulia;
Lüscher, Bernhard

Publication type:

Article

PERGOLA: fast and deterministic linkage mapping of polyploids.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1416-8

By:

Grandke, Fabian;
Ranganathan, Soumya;
van Bers, Nikkie;
de Haan, Jorn R.;
Metzler, Dirk

Publication type:

Article

Negative binomial mixed models for analyzing microbiome count data.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1441-7

By:

Xinyan Zhang;
Mallick, Himel;
Zaixiang Tang;
Lei Zhang;
Xiangqin Cui;
Benson, Andrew K.;
Nengjun Yi

Publication type:

Article

Genomic prediction with epistasis models: on the marker-coding-dependent performance of the extended GBLUP and properties of the categorical epistasis model (CE).

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1439-1

By:

Martini, Johannes W. R.;
Ning Gao;
Cardoso, Diercles F.;
Wimmer, Valentin;
Erbe, Malena;
Cantet, Rodolfo J. C.;
Simianer, Henner

Publication type:

Article

Accelerating metagenomic read classification on CUDA-enabled GPUs.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1434-6

By:

Kobus, Robin;
Hundt, Christian;
Müller, André;
Schmidt, Bertil

Publication type:

Article

JACUSA: site-specific identification of RNA editing events from replicate sequencing data.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1432-8

By:

Piechotta, Michael;
Wyler, Emanuel;
Ohler, Uwe;
Landthaler, Markus;
Dieterich, Christoph

Publication type:

Article

Fast-GBS: a new pipeline for the efficient and highly accurate calling of SNPs from genotyping-by-sequencing data.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1431-9

By:

Torkamaneh, Davoud;
Laroche, Jérôme;
Bastien, Maxime;
Abed, Amina;
Belzile, François

Publication type:

Article

Minimum redundancy maximum relevance feature selection approach for temporal gene expression data.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1423-9

By:

Radovic, Milos;
Ghalwash, Mohamed;
Filipovic, Nenad;
Obradovic, Zoran

Publication type:

Article

TCGA2BED: extracting, extending, integrating, and querying The Cancer Genome Atlas.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1419-5

By:

Cumbo, Fabio;
Fiscon, Giulia;
Ceri, Stefano;
Masseroli, Marco;
Weitschek, Emanuel

Publication type:

Article

Bon-EV: an improved multiple testing procedure for controlling false discovery rates.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-016-1414-x

By:

Dongmei Li;
Zidian Xie;
Zand, Martin;
Fogg, Thomas;
Dye, Timothy

Publication type:

Article

Deep convolutional neural networks for pan-specific peptide-MHC class I binding prediction.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1997-x

By:

Youngmahn Han;
Dongsup Kim

Publication type:

Article

Identification and characterization of conserved lncRNAs in human and rat brain.

Published in:

BMC Bioinformatics, 2017, v. 18, p. N.PAG, doi. 10.1186/s12859-017-1890-7

By:

Li, Dan;
Yang, Mary Qu

Publication type:

Article

A comparison of genotyping-by-sequencing analysis methods on low-coverage crop datasets shows advantages of a new workflow, GB-eaSy.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-2000-6

By:

Wickland, Daniel P.;
Battu, Gopal;
Hudson, Karen A.;
Diers, Brian W.;
Hudson, Matthew E.

Publication type:

Article

Improved high-dimensional prediction with Random Forests by the use of co-data.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1993-1

By:

te Beest, Dennis E.;
Mes, Steven W.;
Wilting, Saskia M.;
Brakenhoff, Ruud H.;
van de Wiel, Mark A.

Publication type:

Article

16SPIP: a comprehensive analysis pipeline for rapid pathogen detection in clinical samples based on 16S metagenomic sequencing.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 255, doi. 10.1186/s12859-017-1975-3

By:

Jiaojiao Miao;
Na Han;
Yujun Qiang;
Tingting Zhang;
Xiuwen Li;
Wen Zhang

Publication type:

Article

CORNAS: coverage-dependent RNA-Seq analysis of gene expression data without biological replicates.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 243, doi. 10.1186/s12859-017-1974-4

By:

Low, Joel Z. B.;
Tsung Fei Khang;
Tammi, Martti T.

Publication type:

Article

GTZ: a fast compression and cloud transmission tool optimized for FASTQ files.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 233, doi. 10.1186/s12859-017-1973-5

By:

Yuting Xing;
Gen Li;
Zhenguo Wang;
Bolun Feng;
Zhuo Song;
Chengkun Wu

Publication type:

Article

CNN-BLPred: a Convolutional neural network based predictor for â-Lactamases (BL) and their classes.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 221, doi. 10.1186/s12859-017-1972-6

By:

White, Clarence;
Ismail, Hamid D.;
Hiroto Saigo;
KC, Dukka B.

Publication type:

Article

A sparse autoencoder-based deep neural network for protein solvent accessibility and contact number prediction.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 211, doi. 10.1186/s12859-017-1971-7

By:

Lei Deng;
Chao Fan;
Zhiwen Zeng

Publication type:

Article

2D-EM clustering approach for highdimensional data through folding feature vectors.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 195, doi. 10.1186/s12859-017-1970-8

By:

Sharma, Alok;
Kamola, Piotr J.;
Tatsuhiko Tsunoda

Publication type:

Article

Refine gene functional similarity network based on interaction networks.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 183, doi. 10.1186/s12859-017-1969-1

By:

Zhen Tian;
Maozu Guo;
Chunyu Wang;
Xiaoyan Liu;
Shiming Wang

Publication type:

Article

Novel human microbe-disease association prediction using network consistency projection.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 173, doi. 10.1186/s12859-017-1968-2

By:

Wenzheng Bao;
Zhichao Jiang;
De-Shuang Huang

Publication type:

Article

CoMet: a workflow using contig coverage and composition for binning a metagenomic sample with high precision.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 161, doi. 10.1186/s12859-017-1967-3

By:

Herath, Damayanthi;
Sen-Lin Tang;
Tandon, Kshitij;
Ackland, David;
Halgamuge, Saman Kumara

Publication type:

Article