Works matching IS 14712105 AND DT 2015 AND VI 16

Results: 709

Multi-label multi-instance transfer learning for simultaneous reconstruction and crosstalk modeling of multiple human signaling pathways.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/s12859-015-0841-4

By:

Suyu Mei;
Hao Zhu

Publication type:

Article

BigQ: a NoSQL based framework to handle genomic variants in i2b2.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/s12859-015-0861-0

By:

Gabetta, Matteo;
Limongelli, Ivan;
Rizzo, Ettore;
Riva, Alberto;
Segagni, Daniele;
Bellazzi, Riccardo

Publication type:

Article

Treelink: data integration, clustering and visualization of phylogenetic trees.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/s12859-015-0860-1

By:

Allende, Christian;
Sohn, Erik;
Little, Cedric

Publication type:

Article

Pathosphere.org: pathogen detection and characterization through a web-based, open source informatics platform.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/s12859-015-0840-5

By:

Kilianski, Andy;
Carcel, Patrick;
Shijie Yao;
Roth, Pierce;
Schulte, Josh;
Donarum, Greg B.;
Fochler, Ed T.;
Hill, Jessica M.;
Liem, Alvin T.;
Wiley, Michael R.;
Ladner, Jason T.;
Pfeffer, Bradley P.;
Elliot, Oliver;
Petrosov, Alexandra;
Jima, Dereje D.;
Vallard, Tyghe G.;
Melendrez, Melanie C.;
Skowronski, Evan;
Quan, Phenix-Lan;
Ian Lipkin, W.

Publication type:

Article

GIW and InCoB are advancing bioinformatics in the Asia-Pacific.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S18-I1

By:

Schönbach, Christian;
Horton, Paul;
Siu-Ming Yiu;
Tin Wee Tan;
Ranganathan, Shoba

Publication type:

Article

NERI: network-medicine based integrative approach for disease gene prioritization by relative importance.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S19-S9

By:

Simões, Sérgio N.;
Martins Jr., David C.;
Pereira, Carlos A. B.;
Hashimoto, Ronaldo F.;
Brentani, Helena

Publication type:

Article

FluxCTTX: A LIMS-Based Tool for Management and Analysis of Cytotoxicity Assays Data.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S19-S8

By:

Faria-Campos, Alessandra C.;
Balottin, Luciene B.;
Zuin, Gianlucca;
Garcia, Vinicius;
Batista, Paulo H. S.;
Granjeiro, José M.;
Campos, Sérgio V. A.

Publication type:

Article

Classification epitopes in groups based on their protein family.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S19-S7

By:

Gonzalez Kozlova, Edgar Ernesto;
Viart, Benjamin Thomas;
Machado de Avila, Ricardo Andrez;
Felicori, Liza Figueredo;
Chavez-Olortegui, Carlos

Publication type:

Article

Evolution of genes neighborhood within reconciled phylogenies: an ensemble approach.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S19-S6

By:

Chauve, Cedric;
Ponty, Yann;
Pereira Zanetti, João Paulo

Publication type:

Article

The impact of sequence length and number of sequences on promoter prediction performance.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S19-S5

By:

Carvalho, Sávio G.;
Guerra-Sá, Renata;
de C. Merschmann, Luiz H.

Publication type:

Article

An innovative electronic health record system for rare and complex diseases.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S19-S4

By:

Faria-Campos, Alessandra C.;
Hanke, Lucas A.;
Batista, Paulo H. S.;
Garcia, Vinicius;
Campos, Sérgio V. A.

Publication type:

Article

Sorting by weighted inversions considering length and symmetry.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S19-S3

By:

Baudet, Christian;
Dias, Ulisses;
Dias, Zanoni

Publication type:

Article

Algebraic Dynamic Programming over general data structures.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S19-S2

By:

zu Siederdissen, Christian Höner;
Prohaska, Sonja J.;
Stadler, Peter F.

Publication type:

Article

Structural studies on molecular mechanisms of Nelfinavir resistance caused by non-active site mutation V77I in HIV-1 protease.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S19-S10

By:

Gupta, Ankita;
Jamal, Salma;
Goyal, Sukriti;
Jain, Ritu;
Wahi, Divya;
Grover, Abhinav

Publication type:

Article

On the distribution of cycles and paths in multichromosomal breakpoint graphs and the expected value of rearrangement distance.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S19-S1

By:

Feijão, Pedro;
Martinez, Fábio Viduani;
Thévenin, Annelyse

Publication type:

Article

Erratum to: Efficient experimental design for uncertainty reduction in gene regulatory networks.

Published in:: 2015
Publication type:: Correction Notice

MRMPlus: an open source quality control and assessment tool for SRM/MRM assay development.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/s12859-015-0838-z

By:

Aiyetan, Paul;
Thomas, Stefani N.;
Zhen Zhang;
Hui Zhang

Publication type:

Article

MIA: Mutual Information Analyzer, a graphic user interface program that calculates entropy, vertical and horizontal mutual information of molecular sequence sets.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/s12859-015-0837-0

By:

Lichtenstein, Flavio;
Antoneli Jr, Fernando;
Briones, Marcelo R. S.

Publication type:

Article

Bioinformatics approach to predict target genes for dysregulated microRNAs in hepatocellular carcinoma: study on a chemically-induced HCC mouse model.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/s12859-015-0836-1

By:

Del Vecchio, Filippo;
Gallo, Francesco;
Di Marco, Antinisca;
Mastroiaco, Valentina;
Caianiello, Pasquale;
Zazzeroni, Francesca;
Alesse, Edoardo;
Tessitore, Alessandra

Publication type:

Article

Penalized weighted low-rank approximation for robust recovery of recurrent copy number variations.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/s12859-015-0835-2

By:

Xiaoli Gao

Publication type:

Article

Parameterizing sequence alignment with an explicit evolutionary model.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/s12859-015-0832-5

By:

Rivas, Elena;
Eddy, Sean R.

Publication type:

Article

Condensing Raman spectrum for single-cell phenotype analysis.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S18-S15

By:

Shiwei Sun;
Xuetao Wang;
Xin Gao;
Lihui Ren;
Xiaoquan Su;
Dongbo Bu;
Kang Ning

Publication type:

Article

Characterizing informative sequence descriptors and predicting binding affinities of heterodimeric protein complexes.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S18-S14

By:

Srinivasulu, Yerukala Sathipati;
Jyun-Rong Wang;
Kai-Ti Hsu;
Ming-Ju Tsai;
Charoenkwan, Phasit;
Wen-Lin Huang;
Hui-Ling Huang;
Shinn-Ying Ho

Publication type:

Article

Obtaining long 16S rDNA sequences using multiple primers and its application on dioxin-containing samples.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S18-S13

By:

Yi-Lin Chen;
Chuan-Chun Lee;
Ya-Lan Lin;
Kai-Min Yin;
Chung-Liang Ho;
Tsunglin Liu

Publication type:

Article

Positive-unlabeled learning for the prediction of conformational B-cell epitopes.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S18-S12

By:

Jing Ren;
Qian Liu;
Ellis, John;
Jinyan Li

Publication type:

Article

Light-RCV: a lightweight read coverage viewer for next generation sequencing data.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S18-S11

By:

Che-Wei Chang;
Wen-Bin Lee;
An Chen-Deng;
Tsunglin Liu;
Tseng, Joseph T.;
Tien-Hao Chang, Darby

Publication type:

Article

A two-layered machine learning method to identify protein O-GlcNAcylation sites with OGlcNAc transferase substrate motifs.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S18-S10

By:

Hui-Ju Kao;
Chien-Hsun Huang;
Bretaña, Neil Arvin;
Cheng-Tsung Lu;
Kai-Yao Huang;
Shun-Long Weng;
Tzong-Yi Lee

Publication type:

Article

An adaptive genetic algorithm for selection of blood-based biomarkers for prediction of Alzheimer's disease progression.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S18-S1

By:

Vandewater, Luke;
Brusic, Vladimir;
Wilson, William;
Macaulay, Lance;
Ping Zhang

Publication type:

Article

Prediction of neddylation sites from protein sequences and sequence-derived properties.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S18-S9

By:

Yavuz, Ahmet Sinan;
Sözer, Namık Berk;
Sezerman, Osman Uğur

Publication type:

Article

Discrete structural features among interface residue-level classes.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S18-S8

By:

Sowmya, Gopichandran;
Ranganathan, Shoba

Publication type:

Article

Principal component analysis for designed experiments.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S18-S7

By:

Tomokazu Konishi

Publication type:

Article

Privacy-preserving search for chemical compound databases.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S18-S6

By:

Kana Shimizu;
Koji Nuida;
Hiromi Arai;
Shigeo Mitsunari;
Nuttapong Attrapadung;
Michiaki Hamada;
Koji Tsuda;
Takatsugu Hirokawa;
Jun Sakuma;
Goichiro Hanaoka;
Kiyoshi Asai

Publication type:

Article

Analysis of genomic rearrangements by using the Burrows-Wheeler transform of short-read data.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S18-S5

By:

Kouichi Kimura;
Asako Koike

Publication type:

Article

Automated identification of copepods using digital image processing and artificial neural network.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S18-S4

By:

Lee Kien Leow;
Li-Lee Chew;
Ving Ching Chong;
Dhillon, Sarinder Kaur

Publication type:

Article

Accurate reconstruction of viral quasispecies spectra through improved estimation of strain richness.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S18-S3

By:

Jayasundara, Duleepa;
Saeed, I.;
Chang, B. C.;
Sen-Lin Tang;
Halgamuge, Saman K.

Publication type:

Article

PCTFPeval: a web tool for benchmarking newly developed algorithms for predicting cooperative transcription factor pairs in yeast.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S18-S2

By:

Fu-Jou Lai;
Hong-Tsun Chang;
Wei-Sheng Wu

Publication type:

Article

Identification of aberrant gene expression associated with aberrant promoter methylation in primordial germ cells between E13 and E16 rat F3 generation vinclozolin lineage.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S18-S16

By:

Taguchi, Y.-h.

Publication type:

Article

Structural vs. functional mechanisms of duplicate gene loss following whole genome doubling.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S17-S9

By:

Sankoff, David;
Chunfang Zheng;
Baoyong Wang;
Buen Abad Najar, Carlos Fernando

Publication type:

Article

Automated parameter estimation for biological models using Bayesian statistical model checking.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S17-S8

By:

Hussain, Faraz;
Langmead, Christopher J.;
Qi Mi;
Dutta-Moscato, Joyeeta;
Vodovotz, Yoram;
Jha, Sumit K.

Publication type:

Article

In search of perfect reads.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S17-S7

By:

Pal, Soumitra;
Aluru, Srinivas

Publication type:

Article

Signal reachability facilitates characterization of probabilistic signaling networks.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S17-S6

By:

Gabr, Haitham;
Kahveci, Tamer

Publication type:

Article

A computational method for drug repositioning using publicly available gene expression data.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S17-S5

By:

Shabana, K. M.;
Abdul Nazeer, K. A.;
Pradhan, Meeta;
Palakal, Mathew

Publication type:

Article

ORBiT: Oak Ridge biosurveillance toolkit for public health dynamics.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S17-S4

By:

Ramanathan, Arvind;
Pullum, Laura L.;
Hobson, Tanner C.;
Steed, Chad A.;
Quinn, Shannon P.;
Chennubhotla, Chakra S.;
Valkova, Silvia

Publication type:

Article

How genome complexity can explain the difficulty of aligning reads to genomes.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S17-S3

By:

Vinhthuy Phan;
Shanshan Gao;
Quang Tran;
Vo, Nam S.

Publication type:

Article

EC: an efficient error correction algorithm for short reads.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S17-S2

By:

Saha, Subrata;
Rajasekaran, Sanguthevar

Publication type:

Article

Identifying representative drug resistant mutants of HIV.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S17-S1

By:

Xiaxia Yu;
Weber, Irene T.;
Harrison, Robert W.

Publication type:

Article

Rare variants analysis using penalization methods for whole genome sequence data.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/s12859-015-0825-4

By:

Yazdani, Akram;
Yazdani, Azam;
Boerwinkle, Eric

Publication type:

Article

DHOEM: a statistical simulation software for simulating new markers in real SNP marker data.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 404, doi. 10.1186/s12859-015-0830-7

By:

Jacquin, Laval;
Cao, Tuong-Vi;
Grenier, Cécile;
Ahmadi, Nourollah

Publication type:

Article

Accurate prediction of nuclear receptors with conjoint triad feature.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/s12859-015-0828-1

By:

Hongchu Wang;
Xuehai Hu

Publication type:

Article

M<sup>3</sup>-S: a genotype calling method incorporating information from samples with known genotypes.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/s12859-015-0824-5

By:

Gengxin Li;
Hongyu Zhao

Publication type:

Article