Works matching IS 14712105 AND DT 2011 AND VI 12 AND IP Suppl 1

Results: 56

UMARS: Un-MAppable Reads Solution.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S9

By:

Sung-Chou Li;
Wen-Ching Chan;
Chun-Hung Lai;
Kuo-Wang Tsai;
Chun-Nan Hsu;
Yuh-Shan Jou;
Hua-Chien Chen;
Chun-Hong Chen;
Wen-chang Lin

Publication type:

Article

Ontology-based instance data validation for high-quality curated biological pathways.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S8

By:

Jeong, Euna;
Nagasaki, Masao;
Ueno, Kazuko;
Miyano, Satoru

Publication type:

Article

Multi-resolution independent component analysis for high-performance tumor classification and biomarker discovery.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S7

By:

Henry Han;
Xiao-Li Li

Publication type:

Article

A minimal descriptor of an ancestral recombinations graph.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S6

By:

Parida, Laxmi;
Palamara, Pier Francesco;
Javed, Asif

Publication type:

Article

CLOSEST STRING WITH OUTLIERS.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S55

By:

Boucher, Christina;
Ma, Bin

Publication type:

Article

Incorporating Ab Initio energy into threading approaches for protein structure prediction.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S54

By:

Mingfu Shao;
Sheng Wang;
Chao Wang;
Xiongying Yuan;
Shuai Cheng Li;
Weimou Zheng;
Dongbo Bu

Publication type:

Article

Linkage disequilibrium based genotype calling from low-coverage shotgun sequencing reads.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S53

By:

Duitama, Jorge;
Kennedy, Justin;
Dinakar, Sanjiv;
Hernández, Yözen;
Yufeng Wu;
Măndoiu, Ion I.

Publication type:

Article

Repeat-aware modeling and correction of short read errors.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S52

By:

Xiao Yang;
Aluru, Srinivas;
Dorman, Karin S.

Publication type:

Article

Semantically enabled and statistically supported biological hypothesis testing with tissue microarray databases.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S51

By:

Young Soo Song;
Chan Hee Park;
Hee-Joon Chung;
Hyunjung Shin;
Jihun Kim;
Ju Han Kim

Publication type:

Article

A regression analysis of gene expression in ES cells reveals two gene classes that are significantly different in epigenetic patterns.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S50

By:

Park, Sung-Joon;
Nakai, Kenta

Publication type:

Article

FPGA accelerator for protein secondary structure prediction based on the GOR algorithm.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S5

By:

Fei Xia;
Yong Dou;
Guoqing Lei;
Yusong Tan

Publication type:

Article

Discriminative structural approaches for enzyme active-site prediction.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S49

By:

Kato, Tsuyoshi;
Nagano, Nozomi

Publication type:

Article

Fast and accurate clustering of noncoding RNAs using ensembles of sequence alignments and secondary structures.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S48

By:

Saito, Yutaka;
Sato, Kengo;
Sakakibara, Yasubumi

Publication type:

Article

Predicting and analyzing DNA-binding domains using a systematic approach to identifying a set of informative physicochemical and biochemical properties.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S47

By:

Hui-Lin Huang;
I-Che Lin;
Yi-Fan Liou;
Chia-Ta Tsai;
Kai-Ti Hsu;
Wen-Lin Huang;
Shinn-Jang Ho;
Shinn-Ying Ho

Publication type:

Article

High-throughput peptide quantification using mTRAQ reagent triplex.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S46

By:

Joo Young Yoon;
Jeonghun Yeom;
Heebum Lee;
Kyutae Kim;
Seungjin Na;
Kunsoo Park;
Eunok Paek;
Cheolju Lee

Publication type:

Article

Evaluation of methods for detecting conversion events in gene clusters.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S45

By:

Giltae Song;
Chih-Hao Hsu;
Riemer, Cathy;
Miller, Webb

Publication type:

Article

Resolving the structure of interactomes with hierarchical agglomerative clustering.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S44

By:

Park, Yongjin;
Bader, Joel S.

Publication type:

Article

HDX-Analyzer: a novel package for statistical analysis of protein structure dynamics.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S43

By:

Sanmin Liu;
Lantao Liu;
Uzuner, Ugur;
Xin Zhou;
Manxi Gu;
Weibing Shi;
Yixiang Zhang;
Dai, Susie Y.;
Yuan, Joshua S.

Publication type:

Article

A method for supporting retrieval of articles on protein structure analysis considering users' intention.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S42

By:

Kyogoku, Riku;
Fujimoto, Ryo;
Ozaki, Tomonobu;
Ohkawa, Takenao

Publication type:

Article

Coregulation of transcription factors and microRNAs in human transcriptional regulatory network.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S41

By:

Cho-Yi Chen;
Shui-Tein Chen;
Chiou-Shann Fuh;
Hsueh-Fen Juan;
Hsuan-Cheng Huang

Publication type:

Article

GOChase-II: correcting semantic inconsistencies from Gene Ontology-based annotations for gene products.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S40

By:

Yu Rang Park;
Jihun Kim;
Hye Won Lee;
Young Jo Yoon;
Ju Han Kim

Publication type:

Article

On the PATHGROUPS approach to rapid small phylogeny.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S4

By:

Chunfang Zheng;
Sankoff, David

Publication type:

Article

Interaction site prediction by structural similarity to neighboring clusters in protein-protein interaction networks.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S39

By:

Monji, Hiroyuki;
Koizumi, Satoshi;
Ozaki, Tomonobu;
Ohkawa, Takenao

Publication type:

Article

PicXAA-R: Efficient structural alignment of multiple RNA sequences using a greedy approach.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S38

By:

Sahraeian, Sayed Mohammad Ebrahim;
Byung-Jun Yoon

Publication type:

Article

Query-based biclustering of gene expression data using Probabilistic Relational Models.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S37

By:

Hui Zhao;
Cloots, Lore;
Van den Bulcke, Tim;
Yan Wu;
De Smet, Riet;
Storms, Valerie;
Meysman, Pieter;
Engelen, Kristof;
Marchal, Kathleen

Publication type:

Article

Integrated metabolome and transcriptome analysis of the NCI60 dataset.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S36

By:

Gang Su;
Burant, Charles F.;
Beecher, Christopher W.;
Athey, Brian D.;
Fan Meng

Publication type:

Article

Ligand binding site superposition and comparison based on Atomic Property Fields: identification of distant homologues, convergent evolution and PDB-wide clustering of binding sites.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S35

By:

Totrov, Maxim

Publication type:

Article

Learning probabilistic models of hydrogen bond stability from molecular dynamics simulation trajectories.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S34

By:

Chikalov, Igor;
Yao, Peggy;
Moshkov, Mikhail;
Latombe, Jean-Claude

Publication type:

Article

Potent bace-1 inhibitor design using pharmacophore modeling, in silico screening and molecular docking studies.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S28

By:

John, Shalini;
Thangapandian, Sundarapandian;
Sakkiah, Sugunadevi;
Keun Woo Lee

Publication type:

Article

A study on the flexibility of enzyme active sites.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S32

By:

Yi-Zhong Weng;
Darby Tien-Hao Chang;
Yu-Feng Huang;
Chih-Wei Lin

Publication type:

Article

iGEMDOCK: a graphical environment of enhancing GEMDOCK using pharmacological interactions and post-screening analysis.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S33

By:

Kai-Cheng Hsu;
Yen-Fu Chen;
Shen-Rong Lin;
Jinn-Moon Yang

Publication type:

Article

Changed epitopes drive the antigenic drift for influenza A (H3N2) viruses.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S31

By:

Jhang-Wei Huang;
Jinn-Moon Yang

Publication type:

Article

GARNET - gene set analysis with exploration of annotation relations.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S25

By:

Kyoohyoung Rho;
Bumjin Kim;
Youngjun Jang;
Sanghyun Lee;
Taejeong Bae;
Jihae Seo;
Chaehwa Seo;
Jihyun Lee;
Hyunjung Kang;
Ungsik Yu;
Sunghoon Kim;
Sanghyuk Lee;
Wan Kyu Kim

Publication type:

Article

Predicting gene expression in T cell differentiation from histone modifications and transcription factor binding affinities by linear mixture models.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S29

By:

Costa, Ivan G.;
Roider, Helge G.;
do Rego, Thais G.;
de AT de Carvalho, Francisco

Publication type:

Article

Reconstructing phylogeny from metabolic substrate-product relationships.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S27

By:

Che-Wei Chang;
Ping-Chiang Lyu;
Arita, Masanori

Publication type:

Article

The choice of null distributions for detecting gene-gene interactions in genome-wide association studies.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S26

By:

Can Yang;
Xiang Wan;
Zengyou He;
Qiang Yang;
Hong Xue;
Weichuan Yu

Publication type:

Article

Hsp90/Cdc37 Chaperone/co-chaperone complex, a novel junction anticancer target elucidated by the mode of action of herbal drug Withaferin A.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S30

By:

Grover, Abhinav;
Shandilya, Ashutosh;
Agrawal, Vibhuti;
Pratik, Piyush;
Bhasme, Divya;
Bisaria, Virendra S.;
Sundar, Durai

Publication type:

Article

The G protein-coupled receptors in the pufferfish Takifugu rubripes.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S3

By:

Sarkar, Anita;
Kumar, Sonu;
Sundar, Durai

Publication type:

Article

Strobe sequence design for haplotype assembly.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S24

By:

Lo, Christine;
Bashir, Ali;
Bansal, Vikas;
Bafna, Vineet

Publication type:

Article

Modeling allosteric signal propagation using protein structure networks.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S23

By:

Park, Keunwan;
Kim, Dongsup

Publication type:

Article

Motif-All: discovering all phosphorylation motifs.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S22

By:

Zengyou He;
Can Yang;
Guangyu Guo;
Ning Li;
Weichuan Yu

Publication type:

Article

Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S21

By:

Mitra, Suparna;
Rupek, Paul;
Richter, Daniel C.;
Urich, Tim;
Gilbert, Jack A.;
Meyer, Folker;
Wilke, Andreas;
Huson, Daniel H.

Publication type:

Article

Characterization and sequence prediction of structural variations in α-helix.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S20

By:

Tendulkar, Ashish V.;
Wangikar, Pramod P.

Publication type:

Article

Score regularization for peptide identification.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S2

By:

Zengyou He;
Hongyu Zhao;
Weichuan Yu

Publication type:

Article

Comparative analysis of protein interaction networks reveals that conserved pathways are susceptible to HIV-1 interception.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S19

By:

Xiaoning Qian;
Byung-Jun Yoon

Publication type:

Article

A clique-based method for the edit distance between unordered trees and its application to analysis of glycan structures.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S13

By:

Fukagawa, Daiji;
Tamura, Takeyuki;
Takasu, Atsuhiro;
Tomita, Etsuji;
Akutsu, Tatsuya

Publication type:

Article

A genetic algorithm-based boolean delay model of intracellular signal transduction in inflammation.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S17

By:

Chu Chun Kang;
Yung Jen Chuang;
Kai Che Tung;
Chun Cheih Chao;
Chuan Yi Tang;
Shih Chi Peng;
Wong, David Shan Hill

Publication type:

Article

SOMEA: self-organizing map based extraction algorithm for DNA motif identification with heterogeneous model.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S16

By:

Nung Kion Lee;
Dianhui Wang

Publication type:

Article

Maximum likelihood models and algorithms for gene tree evolution with duplications and losses.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S15

By:

Górecki, Pawel;
Burleigh, Gordon J.;
Eulenstein, Oliver

Publication type:

Article

An ILP solution for the gene duplication problem.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 1, p. 1, doi. 10.1186/1471-2105-12-S1-S14

By:

Wen-Chieh Chang;
Burleigh, Gordon J.;
Fernández-Baca, David F.;
Eulenstein, Oliver

Publication type:

Article