Works matching IS 14712105 AND DT 2011 AND VI 12

Results: 730

An automated homology-based approach for identifying transposable elements.

Published in:

BMC Bioinformatics, 2011, v. 12, n. 1, p. N.PAG, doi. 10.1186/1471-2105-12-130

By:

Kennedy, Ryan C;
Unger, Maria F;
Christley, Scott;
Collins, Frank H;
Madey, Gregory R

Publication type:

Article

Data hosting infrastructure for primary biodiversity data.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 15, p. 1, doi. 10.1186/1471-2105-12-S15-S5

By:

Goddard, Anthony;
Wilson, Nathan;
Cryer, Phil;
Yamashita, Grant

Publication type:

Article

The Biodiversity Informatics Potential Index.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 15, p. 1, doi. 10.1186/1471-2105-12-S15-S4

By:

Ariño, Arturo H.;
Chavan, Vishwas;
King, Nick

Publication type:

Article

Indicators for the Data Usage Index (DUI): an incentive for publishing primary biodiversity data through global information infrastructure.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 15, p. 1, doi. 10.1186/1471-2105-12-S15-S3

By:

Ingwersen, Peter;
Chavan, Vishwas

Publication type:

Article

The data paper: a mechanism to incentivize data publishing in biodiversity science.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 15, p. 1, doi. 10.1186/1471-2105-12-S15-S2

By:

Chavan, Vishwas;
Penev, Lyubomir

Publication type:

Article

Towards mainstreaming of biodiversity data publishing: recommendations of the GBIF Data Publishing Framework Task Group.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 15, p. 1, doi. 10.1186/1471-2105-12-S15-S1

By:

Moritz, Tom;
Krishnan, S.;
Roberts, Dave;
Ingwersen, Peter;
Agosti, Donat;
Penev, Lyubomir;
Cockerill, Matthew;
Chavan, Vishwas

Publication type:

Article

A framework for publishing primary biodiversity data.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 15, p. 1, doi. 10.1186/1471-2105-12-S15-I1

By:

Roberts, Dave;
Moritz, Tom

Publication type:

Article

A new protein-ligand binding sites prediction method based on the integration of protein sequence conservation information.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 14, p. 1, doi. 10.1186/1471-2105-12-S14-S9

By:

Tianli Dai;
Qi Liu;
Jun Gao;
Zhiwei Cao;
Ruixin Zhu

Publication type:

Article

Identification of ubiquitin/ubiquitin-like protein modification from tandem mass spectra with various PTMs.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 14, p. 1, doi. 10.1186/1471-2105-12-S14-S8

By:

Chiyong Kang;
Gwan-Su Yi

Publication type:

Article

ClipCrop: a tool for detecting structural variations with single-base resolution using soft-clipping information.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 14, p. 1, doi. 10.1186/1471-2105-12-S14-S7

By:

Suzuki, Shin;
Yasuda, Tomohiro;
Shiraishi, Yuichi;
Miyano, Satoru;
Nagasaki, Masao

Publication type:

Article

iGepros: an integrated gene and protein annotation server for biological nature exploration.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 14, p. 1, doi. 10.1186/1471-2105-12-S14-S6

By:

Guangyong Zheng;
Haibo Wang;
Chaochun Wei;
Yixue Li

Publication type:

Article

Integrative analysis workflow for the structural and functional classification of C-type lectins.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 14, p. 1, doi. 10.1186/1471-2105-12-S14-S5

By:

Geoffrey Koh;
Ariana Low;
Daren Poh;
Yujian Yao;
Say Kong Ng;
Victor Vai Tak Wong;
Vagenende, Vincent;
Kong-Peng Lam;
Dong-Yup Lee

Publication type:

Article

Development, evaluation and application of 3D QSAR Pharmacophore model in the discovery of potential human renin inhibitors.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 14, p. 1, doi. 10.1186/1471-2105-12-S14-S4

By:

John, Shalini;
Thangapandian, Sundarapandian;
Arooj, Mahreen;
Jong Chan Hong;
Kwang Dong Kim;
Keun Woo Lee

Publication type:

Article

Enumerating tree-like chemical graphs with given upper and lower bounds on path frequencies.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 14, p. 1, doi. 10.1186/1471-2105-12-S14-S3

By:

Shimizu, Masaaki;
Nagamochi, Hiroshi;
Akutsu, Tatsuya

Publication type:

Article

Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 14, p. 1, doi. 10.1186/1471-2105-12-S14-S2

By:

Qiong-Yi Zhao;
Yi Wang;
Yi-Meng Kong;
Da Luo;
Xuan Li;
Pei Hao

Publication type:

Article

A protein-dependent side-chain rotamer library.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 14, p. 1, doi. 10.1186/1471-2105-12-S14-S10

By:

Bhuyan, Md Shariful Islam;
Xin Gao

Publication type:

Article

MUCHA: multiple chemical alignment algorithm to identify building block substructures of orphan secondary metabolites.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 14, p. 1, doi. 10.1186/1471-2105-12-S14-S1

By:

Kotera, Masaaki;
Tokimatsu, Toshiaki;
Kanehisa, Minoru;
Goto, Susumu

Publication type:

Article

HabiSign: a novel approach for comparison of metagenomes and rapid identification of habitatspecific sequences.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 13, p. 1, doi. 10.1186/1471-2105-12-S13-S9

By:

Ghosh, Tarini Shankar;
Mohammed, Monzoorul Haque;
Rajasingh, Hannah;
Chadaram, Sudha;
Mande, Sharmila S.

Publication type:

Article

Comprehensive evaluation of matrix factorization methods for the analysis of DNA microarray gene expression data.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 13, p. 1, doi. 10.1186/1471-2105-12-S13-S8

By:

Mi Hyeon Kim;
Hwa Jeong Seo;
Je-Gun Joung;
Ju Han Kim

Publication type:

Article

Prediction of RNA-binding amino acids from protein and RNA sequences.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 13, p. 1, doi. 10.1186/1471-2105-12-S13-S7

By:

Choi, Sungwook;
Han, Kyungsook

Publication type:

Article

PB1-F2 Finder: scanning influenza sequences for PB1-F2 encoding RNA segments.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 13, p. 1, doi. 10.1186/1471-2105-12-S13-S6

By:

DeLuca, David S.;
Keskin, Derin B.;
Guang Lan Zhang;
Reinherz, Ellis L.;
Brusic, Vladimir

Publication type:

Article

Prediction of dinucleotide-specific RNA-binding sites in proteins.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 13, p. 1, doi. 10.1186/1471-2105-12-S13-S5

By:

Fernandez, Michael;
Kumagai, Yutaro;
Standley, Daron M.;
Sarai, Akinori;
Mizuguchi, Kenji;
Ahmad, Shandar

Publication type:

Article

PTIGS-IdIt, a system for species identification by DNA sequences of the psbA-trnH intergenic spacer region.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 13, p. 1, doi. 10.1186/1471-2105-12-S13-S4

By:

Chang Liu;
Dong Liang;
Ting Gao;
Xiaohui Pang;
Jingyuan Song;
Hui Yao;
Jianping Han;
Zhihua Liu;
Xiaojun Guan;
Kun Jiang;
Huan Li;
Shilin Chen

Publication type:

Article

Building gene expression profile classifiers with a simple and efficient rejection option in R.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 13, p. 1, doi. 10.1186/1471-2105-12-S13-S3

By:

Benso, Alfredo;
Di Carlo, Stefano;
Politano, Gianfranco;
Savino, Alessandro;
Hafeezurrehman, Hafeez

Publication type:

Article

In silico approach to screen compounds active against parasitic nematodes of major socioeconomic importance.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 13, p. 1, doi. 10.1186/1471-2105-12-S13-S25

By:

Khanna, Varun;
Ranganathan, Shoba

Publication type:

Article

Structure-based and ligand-based virtual screening of novel methyltransferase inhibitors of the dengue virus.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 13, p. 1, doi. 10.1186/1471-2105-12-S13-S24

By:

Lim, Ven;
Rahman, Mohd Basyaruddin A.;
Tejo, Bimo A.

Publication type:

Article

In silico modification of suberoylanilide hydroxamic acid (SAHA) as potential inhibitor for class II histone deacetylase (HDAC).

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 13, p. 1, doi. 10.1186/1471-2105-12-S13-S23

By:

Tambunan, Usman S. F.;
Bramantya, N.;
Parikesit, Arli A.

Publication type:

Article

Non-nucleosidic inhibition of Herpes simplex virus DNA polymerase: mechanistic insights into the anti-herpetic mode of action of herbal drug withaferin A.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 13, p. 1, doi. 10.1186/1471-2105-12-S13-S22

By:

Grover, Abhinav;
Agrawal, Vibhuti;
Shandilya, Ashutosh;
Bisaria, Virendra S.;
Sundar, Durai

Publication type:

Article

Exploiting heterogeneous features to improve in silico prediction of peptide status - amyloidogenic or non-amyloidogenic.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 13, p. 1, doi. 10.1186/1471-2105-12-S13-S21

By:

Nair, Smitha Sunil Kumaran;
Subba Reddy, N. V.;
Hareesha, K. S.

Publication type:

Article

Construction and analysis of the protein-protein interaction networks for schizophrenia, bipolar disorder, and major depression.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 13, p. 1, doi. 10.1186/1471-2105-12-S13-S20

By:

Sheng-An Lee;
Theresa Tsun-Hui Tsao;
Ko-Chun Yang;
Han Lin;
Yu-Lun Kuo;
Chien-Hsiang Hsu;
Wen-Kuei Lee;
Kuo-Chuan Huang;
Cheng-Yan Kao

Publication type:

Article

Novel base triples in RNA structures revealed by graph theoretical searching methods.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 13, p. 1, doi. 10.1186/1471-2105-12-S13-S2

By:

Firdaus-Raih, Mohd;
Harrison, Anne-Marie;
Willett, Peter;
rtymiuk, Peter J.

Publication type:

Article

Correlation of cell membrane dynamics and cell motility.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 13, p. 1, doi. 10.1186/1471-2105-12-S13-S19

By:

Veronika, Merlin;
Welsch, Roy;
Ng, Alvin;
Matsudaira, Paul;
Rajapakse, Jagath C.

Publication type:

Article

Cell cycle phase classification in 3D in vivo microscopy of Drosophila embryogenesis.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 13, p. 1, doi. 10.1186/1471-2105-12-S13-S18

By:

Tie Hua Du;
Wee Choo Puah;
Wasser, Martin

Publication type:

Article

Stability of building gene regulatory networks with sparse autoregressive models.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 13, p. 1, doi. 10.1186/1471-2105-12-S13-S17

By:

Rajapakse, Jagath C.;
Mundra, Piyushkumar A.

Publication type:

Article

A quantitative analysis of monochromaticity in genetic interaction networks.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 13, p. 1, doi. 10.1186/1471-2105-12-S13-S16

By:

Chien-Hsiang Hsu;
Tse-Yi Wang;
Hsueh-Ting Chu;
Cheng-Yan Kao;
Kuang-Chi Chen

Publication type:

Article

Finding consistent disease subnetworks across microarray datasets.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 13, p. 1, doi. 10.1186/1471-2105-12-S13-S15

By:

Soh, Donny;
Difeng Dong;
Yike Guo;
Limsoon Wong

Publication type:

Article

Network-based functional enrichment.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 13, p. 1, doi. 10.1186/1471-2105-12-S13-S14

By:

Poirel, Christopher L.;
Owens, III, Clifford C.;
Murali, T. M.

Publication type:

Article

Near-membrane ensemble elongation in the proline-rich LRP6 intracellular domain may explain the mysterious initiation of the Wnt signaling pathway.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 13, p. 1, doi. 10.1186/1471-2105-12-S13-S13

By:

Chengcheng Liu;
Yao, Mingxi;
Hogue, Christopher W. V.

Publication type:

Article

Assessment of predictive models for chlorophyll-a concentration of a tropical lake.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 13, p. 1, doi. 10.1186/1471-2105-12-S13-S12

By:

Malek, Sorayya;
Ahmad, Sharifah Mumtazah Syed;
Singh, Sarinder Kaur Kashmir;
Milow, Pozi;
Salleh, Aishah

Publication type:

Article

Revealing the functionality of hypothetical protein KPN00728 from Klebsiella pneumoniae MGH78578: molecular dynamics simulation approaches.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 13, p. 1, doi. 10.1186/1471-2105-12-S13-S11

By:

Sy Bing Choi;
Normi, Yahaya M.;
Wahab, Habibah A.

Publication type:

Article

Investigation and identification of protein γ-glutamyl carboxylation sites.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 13, p. 1, doi. 10.1186/1471-2105-12-S13-S10

By:

Tzong-Yi Lee;
Cheng-Tsung Lu;
Shu-An Chen;
Bretaña, Neil Arvin;
Tzu-Hsiu Cheng;
Min-Gang Su;
Kai-Yao Huang

Publication type:

Article

Towards big data science in the decade ahead from ten years of InCoB and the 1st ISCB-Asia Joint Conference.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 13, p. 1, doi. 10.1186/1471-2105-12-S13-S1

By:

Ranganathan, Shoba;
Schönbach, Christian;
Kelso, Janet;
Rost, Burkhard;
Nathan, Sheila;
Tan, Tin Wee

Publication type:

Article

New threats to health data privacy.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 12, p. 1, doi. 10.1186/1471-2105-12-S12-S7

By:

Fengjun Li;
Xukai Zou;
Peng Liu;
Chen, Jake Y.

Publication type:

Article

A new method for identifying bivariate differential expression in high dimensional microarray data using quadratic discriminant analysis.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 12, p. 1, doi. 10.1186/1471-2105-12-S12-S6

By:

Arevalillo, Jorge M;
Navarro, Hilario

Publication type:

Article

Planning combinatorial disulfide cross-links for protein fold determination.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 12, p. 1, doi. 10.1186/1471-2105-12-S12-S5

By:

Fei Xiong;
Friedman, Alan M.;
Bailey-Kellogg, Chris

Publication type:

Article

Combining active learning and semi-supervised learning techniques to extract protein interaction sentences.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 12, p. 1, doi. 10.1186/1471-2105-12-S12-S4

By:

Min Song;
Hwanjo Yu;
Han, Wook-Shin

Publication type:

Article

FEPI-MB: identifying SNPs-disease association using a Markov Blanket-based approach.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 12, p. 1, doi. 10.1186/1471-2105-12-S12-S3

By:

Bing Han;
Chen, Xue-wen;
Zohreh Talebizadeh

Publication type:

Article

Systematic identification of functional modules and cis-regulatory elements in Arabidopsis thaliana.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 12, p. 1, doi. 10.1186/1471-2105-12-S12-S2

By:

Ruan, Jianhua;
Perez, Joseph;
Hernandez, Brian;
Lei, Chengwei;
Sunter, Garry;
Sponsel, Valerie M.

Publication type:

Article

Discovery of error-tolerant biclusters from noisy gene expression data.

Published in:

BMC Bioinformatics, 2011, v. 12, n. Suppl 12, p. 1, doi. 10.1186/1471-2105-12-S12-S1

By:

Gupta, Rohit;
Rao, Navneet;
Kumar, Vipin

Publication type:

Article

Highlights from the Seventh International Society for Computational Biology (ISCB) Student Council Symposium 2011: Vienna, Austria. 15 July 2011.

Published in:: BMC Bioinformatics, 2011, v. 12, n. Suppl 11, p. 1
Publication type:: Article